This work is licensed under the Creative Commons Attribution 4.0 International License.
Arezi, B., Xing, W., Sorge, J. A. and Hogrefe, H. H.. 2003. Amplification efficiency of thermostable DNA polymerases. Analytical Biochemistry 321: 226–235.AreziB.XingW.SorgeJ. A. and HogrefeH. H.. 2003. Amplification efficiency of thermostable DNA polymerases. 321: 226–235.10.1016/S0003-2697(03)00465-214511688Search in Google Scholar
Barnes, W. M.. 1994. PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proceedings of the National Academy of Sciences, 91: 2216–2220.BarnesW. M.. 1994. . Proceedings of the National Academy of Sciences, 91: 2216–2220.Search in Google Scholar
Bik, H. M., Fournier, D., Sung, W., Bergeron, R. D. and Thomas, W. K.. 2013. Intra-genomic variation in the ribosomal repeats of nematodes. PLoS One 8.BikH. M.FournierD.SungW.BergeronR. D. and ThomasW. K.. 2013. Intra-genomic variation in the ribosomal repeats of nematodes. 8.10.1371/journal.pone.0078230379566524147124Search in Google Scholar
Blaxter, M. L., De Ley, P., Garey, J. R., Liu, L. X., Scheldeman, P., Vierstraete, A., Vanfleteren, J. R., Mackey, L. Y, Dorris, M., Frisse, L. M., Vida, J. T. and Thomas, W. K.. 1998. A molecular evolutionary framework for the phylum Nematoda. Nature 392: 71–74.BlaxterM. L.De LeyP.GareyJ. R.LiuL. X.ScheldemanP.VierstraeteA.VanfleterenJ. R.MackeyL. YDorrisM.FrisseL. M.VidaJ. T. and ThomasW. K.. 1998. A molecular evolutionary framework for the phylum Nematoda. 392: 71–74.10.1038/321609510248Search in Google Scholar
Carta, L. K. and Li, S.. 2018. Improved 18S small subunit rDNA primers for problematic nematode amplification. Journal of Nematology 50: 533–542.CartaL. K. and LiS.. 2018. Improved 18S small subunit rDNA primers for problematic nematode amplification. 50: 533–542.10.21307/jofnem-2018-051690929231094155Search in Google Scholar
Carta, L. K., Skantar, A. M. and Handoo, Z. A.. 2010. Molecular rDNA phylogeny of Telotylenchidae Siddiqi, 1960 and evaluation of tail termini. Journal of Nematology 42: 359–369.CartaL. K.SkantarA. M. and HandooZ. A.. 2010. Molecular rDNA phylogeny of Telotylenchidae Siddiqi, 1960 and evaluation of tail termini. 42: 359–369.Search in Google Scholar
Cheng, S., Chen, Y., Monforte, J. A., Higuchi, R. and Van Houten, B.. 1995. Template integrity is essential for PCR amplification of 20- to 30-kb sequences from genomic DNA. Genome Research 4: 294–298.ChengS.ChenY.MonforteJ. A.HiguchiR. and Van HoutenB.. 1995. Template integrity is essential for PCR amplification of 20- to 30-kb sequences from genomic DNA. 4: 294–298.10.1101/gr.4.5.2947580917Search in Google Scholar
Cherry, T., Szalanski, A. L., Todd, T. C. and Powers, T. O.. 1997. The internal transcribed spacer region of Belonolaimus (Nemata: Belonolaimidae). Journal of Nematology 29: 23–29.CherryT.SzalanskiA. L.ToddT. C. and PowersT. O.. 1997. The internal transcribed spacer region of Belonolaimus (Nemata: Belonolaimidae). 29: 23–29.Search in Google Scholar
Ferris, V. R., Ferris, J. M. and Faghihi, J.. 1993. Variation in spacer ribosomal DNA in some cyst-forming species of plant parasitic nematodes. Fundamental and Applied Nematology 16: 177–184.FerrisV. R.FerrisJ. M. and FaghihiJ.. 1993. Variation in spacer ribosomal DNA in some cyst-forming species of plant parasitic nematodes. 16: 177–184.Search in Google Scholar
Floyd, R., Abebe, E., Papert, A. and Blaxter, M.. 2002. Molecular barcodes for soil nematode identification. Molecular Ecology 11: 839–850.FloydR.AbebeE.PapertA. and BlaxterM.. 2002. Molecular barcodes for soil nematode identification. 11: 839–850.10.1046/j.1365-294X.2002.01485.x11972769Search in Google Scholar
Hillis, D. M. and Dixon, M. T.. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly Review of Biology 66: 411–453.HillisD. M. and DixonM. T.. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. 66: 411–453.10.1086/4173381784710Search in Google Scholar
Holterman, M., van der Wurff, A., van den Elsen, S., van Megen, H., Bongers, T., Holovachov, O., Bakker, J. and Helder, J.. 2006. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution 23: 1792–1800.HoltermanM.van der WurffA.van den ElsenS.van MegenH.BongersT.HolovachovO.BakkerJ. and HelderJ.. 2006. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. 23: 1792–1800.10.1093/molbev/msl04416790472Search in Google Scholar
Holterman, M., Rybarczyk, K., van Den Elsen, S., van Megen, H., Mooyman, P., Peña Santiago, R., Bongers, T., Bakker, J. and Helder, J.. 2008. A ribosomal DNA-based framework for the detection and quantification of stress-sensitive nematode families in terrestrial habitats. Molecular Ecology Resources 8: 23–34.HoltermanM.RybarczykK.van Den ElsenS.van MegenH.MooymanP.Peña SantiagoR.BongersT.BakkerJ. and HelderJ.. 2008. A ribosomal DNA-based framework for the detection and quantification of stress-sensitive nematode families in terrestrial habitats. 8: 23–34.10.1111/j.1471-8286.2007.01963.x21585715Search in Google Scholar
Joyce, S. A., Reid, A., Driver, F. and Curran, J.. 1994. Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes, in Burnell, A. M., Ehlers, R.U. and Masson, J. P.. (Eds), COST 812 biotechnology: genetics of entomopathogenic nematode – bacterium complexes: proceedings of symposium and workshop, St. Patrick’s College, Maynooth, Co., European Commission, DG XII, Kildare, Luxembourg: 178–187.JoyceS. A.ReidA.DriverF. and CurranJ.. 1994. Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes, in BurnellA. M.EhlersR.U. and MassonJ. P.. (Eds), , St. Patrick’s College, Maynooth, Co., European Commission, DG XII, Kildare, Luxembourg: 178–187.Search in Google Scholar
Kwok, S., Chang, S. Y., Sninsky, J. J. and Wang, A.. 1994. A guide to the design and use of mismatched and degenerate primers. Genome Research 3: S39–S47.KwokS.ChangS. Y.SninskyJ. J. and WangA.. 1994. A guide to the design and use of mismatched and degenerate primers. 3: S39–S47.10.1101/gr.3.4.S398173508Search in Google Scholar
Liao, Q.. 1999. Concerted evolution: molecular mechanism and biological implications. American Journal of Human Genetics 64: 24–30.LiaoQ.. 1999. Concerted evolution: molecular mechanism and biological implications. 64: 24–30.10.1086/30222113776989915939Search in Google Scholar
Megen, H. V., Elsen, S. V. D., Holterman, M., Karssen, G., Mooyman, P., Bongers, T., Holovachov, O., Bakker, J. and Helder, J.. 2009. A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. Nematology 11: 927–950.MegenH. V.ElsenS. V. D.HoltermanM.KarssenG.MooymanP.BongersT.HolovachovO.BakkerJ. and HelderJ.. 2009. A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. 11: 927–950.10.1163/156854109X456862Search in Google Scholar
Nunn, G. B.. 1992. Nematode molecular evolution. PhD dissertation, University of Nottingham, Nottingham, UK.NunnG. B.. 1992. . PhD dissertation, University of Nottingham, Nottingham, UK.Search in Google Scholar
Rodrigues Da Silva, N. R., Cristina Da Silva, M., Fonseca Genevois, V., Esteves, A. M., De Ley, P., Decraemer, W., Rieger, T. T. and Dos Santos Correia, M. T.. 2010. Marine nematode taxonomy in the age of DNA: the present and future of molecular tools to assess their biodiversity. Nematology 12: 661–672.Rodrigues Da SilvaN. R.Cristina Da SilvaM.Fonseca GenevoisV.EstevesA. M.De LeyP.DecraemerW.RiegerT. T. and Dos Santos CorreiaM. T.. 2010. Marine nematode taxonomy in the age of DNA: the present and future of molecular tools to assess their biodiversity. 12: 661–672.10.1163/138855410X500073Search in Google Scholar
Thomas, W. K.. 2011. Molecular Techniques, in International Seabed Authority eds., Marine Benthic Nematode Molecular Protocol Handbook (Nematode Barcoding). Technical Study: No. 7, ISA Technical study series: 22–27.ThomasW. K.. 2011. Molecular Techniques, in International Seabed Authority eds., Marine Benthic Nematode Molecular Protocol Handbook (Nematode Barcoding). No. 7, ISA Technical study series: 22–27.Search in Google Scholar
Tindall, K. R. and Kunkel, T. A.. 1988. Fidelity of DNA synthesis by the Thermus aquaticus DNA Polymerase. Biochemistry 27: 6008–6013.TindallK. R. and KunkelT. A.. 1988. Fidelity of DNA synthesis by the Thermus aquaticus DNA Polymerase. 27: 6008–6013.10.1021/bi00416a0272847780Search in Google Scholar
Vrain, T. C., Wakarchuk, D. A., Levesque, A.C. and Hamilton, R. I.. 1992. Intraspecific rDNA restriction fragment length polymorphisms in the Xiphinema americanum group. Fundamental and Applied Nematology 15: 563–573.VrainT. C.WakarchukD. A.LevesqueA.C. and HamiltonR. I.. 1992. Intraspecific rDNA restriction fragment length polymorphisms in the Xiphinema americanum group. 15: 563–573.Search in Google Scholar
Vrain, T. C. I. 1993. Restriction fragment length polymorphism separates species of the Xiphinema americaum group. Journal of Nematology 25: 361–364.VrainT. C. I. 1993. Restriction fragment length polymorphism separates species of the Xiphinema americaum group. 25: 361–364.Search in Google Scholar
Watson, J. D.. 1971. The regulation of DNA synthesis in eukaryotes. Advances in Cell Biology 2: 1–46.WatsonJ. D.. 1971. The regulation of DNA synthesis in eukaryotes. 2: 1–46.10.1007/978-1-4615-9588-5_14949654Search in Google Scholar
Williams, B. D., Schrank, B., Huynh, C., Shownkeen, R. and Waterson, R. H.. 1992. A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged sites. Genetics 131: 609–624.WilliamsB. D.SchrankB.HuynhC.ShownkeenR. and WatersonR. H.. 1992. A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged sites. 131: 609–624.10.1093/genetics/131.3.60912050341321065Search in Google Scholar
Wright, E. S., Yilmaz, L. S., Ram, S., Gasser, J. M., Harrington, G. W. and Noguera, D. R.. 2014. Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates. Environmental Microbiology 16: 1354–1365.WrightE. S.YilmazL. S.RamS.GasserJ. M.HarringtonG. W. and NogueraD. R.. 2014. Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates. 16: 1354–1365.10.1111/1462-2920.1225924750536Search in Google Scholar
Wu, J. H., Hong, P. Y. and Liu, W. T.. 2009. Quantitative effects of position and type of single mismatch on single base primer extension. Journal of Microbiological Methods 77: 267–275.WuJ. H.HongP. Y. and LiuW. T.. 2009. Quantitative effects of position and type of single mismatch on single base primer extension. 77: 267–275.10.1016/j.mimet.2009.03.00119285527Search in Google Scholar