Detection of Acinetobacter spp. in Blood Cultures by an Improved Fluorescent in Situ Hybridization Assay

Alaei N., M. Aziemzadeh and A. Bahador. 2016. Antimicrobial resistance profiles and genetic elements involved in carbapenem resistance in Acinetobacter baumannii isolates from a referral hospital in Southern Iran. J. Glob. Antimicrob. Resist. 5: 75–79.AlaeiN.M.AziemzadehA.Bahador2016Antimicrobial resistance profiles and genetic elements involved in carbapenem resistance in Acinetobacter baumannii isolates from a referral hospital in Southern IranJ. Glob. Antimicrob. Resist5757910.1016/j.jgar.2015.12.00527436472Search in Google Scholar

Amann R.I., B.J. Binder, R.J. Olson, S.W. Chisholm, R. Devereux and D.A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56: 1919–1925.AmannR.I.B.J.BinderR.J.OlsonS.W.ChisholmR.DevereuxD.A.Stahl1990Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populationsAppl. Environ. Microbiol561919192510.1128/aem.56.6.1919-1925.19901845312200342Search in Google Scholar

Bazzi A.M., A.A. Rabaan, Z. El Edaily, S. John, M.M. Fawarah and J.A. Al-Tawfiq. 2017. Comparison among four proposed direct blood culture microbial identification methods using MALDI-TOF MS. J. Infect. Public. Health. 10: 308–315.BazziA.M.A.A.RabaanZ.El EdailyS.JohnM.M.FawarahJ.A.Al-Tawfiq2017Comparison among four proposed direct blood culture microbial identification methods using MALDI-TOF MSJ. Infect. Public. Health1030831510.1016/j.jiph.2016.05.01127312817Search in Google Scholar

Carroll K.C. and J.A. Hobden. 2016. Pseudomonas and Acinetobacter, pp. 245–251. In: Carroll K.C., J.S. Butel, S.A. Morse and T.A. Mietzner (eds). Jawetz, Melnick, & Adelberg’s Medical Microbiology. McGraw-Hill Education, New York.CarrollK.C.J.A.Hobden2016Pseudomonas and Acinetobacter ,pp. 245251.In:CarrollK.C.J.S.ButelS.A.MorseT.A.Mietzner(eds).Jawetz, Melnick, & Adelberg’s Medical MicrobiologyMcGraw-Hill EducationNew YorkSearch in Google Scholar

Chen T.-L., Y.-T. Lee, S.-C. Kuo, S.-P. Yang, C.-P. Fung and S.-D. Lee. 2014. Rapid identification of Acinetobacter baumannii, Acinetobacter nosocomialis and Acinetobacter pittii with a multiplex PCR assay. J. Med. Microbiol. 63: 1154–1159.ChenT.-L.Y.-T.LeeS.-C.KuoS.-P.YangC.-P.FungS.-D.Lee2014Rapid identification of Acinetobacter baumannii, Acinetobacter nosocomialis and Acinetobacter pittii with a multiplex PCR assayJ. Med. Microbiol631154115910.1099/jmm.0.071712-024965800Search in Google Scholar

Chen X., Y. Chen, Q. Yang, H. Kong, F. Yu, D. Han, S. Zheng, D. Cui and L. Li. 2013. Plesiomonas shigelloides infection in Southeast China. PloS one. 8: e77877.ChenX.Y.ChenQ.YangH.KongF.YuD.HanS.ZhengD.CuiL.Li2013Plesiomonas shigelloides infection in Southeast ChinaPloS one8e7787710.1371/journal.pone.0077877381718224223738Search in Google Scholar

Cheng W.C., I.S. Jan, J.M. Chen, S.H. Teng, L.J. Teng, W.H. Sheng, W.C. Ko and P.R. Hsueh. 2015. Evaluation of the Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of blood isolates of Vibrio species. J. Clin. Microbiol. 53: 1741–1744.ChengW.C.I.S.JanJ.M.ChenS.H.TengL.J.TengW.H.ShengW.C.KoP.R.Hsueh2015Evaluation of the Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of blood isolates of Vibrio speciesJ. Clin. Microbiol531741174410.1128/JCM.00105-15440074325740773Search in Google Scholar

Choi H.K., Y.K. Kim, H.Y. Kim, J.E. Park and Y. Uh. 2015. Clinical and microbiological features of Providencia bacteremia: experience at a tertiary care hospital. Korean. J. Intern. Med. 30: 219–225.ChoiH.K.Y.K.KimH.Y.KimJ.E.ParkY.Uh2015Clinical and microbiological features of Providencia bacteremia: experience at a tertiary care hospitalKorean. J. Intern. Med3021922510.3904/kjim.2015.30.2.219435132925750564Search in Google Scholar

Doughari H.J., P.A. Ndakidemi, I.S. Human and S. Benade. 2011. The ecology, biology and pathogenesis of Acinetobacter spp.: an overview. Microbes Environ. 26: 101–112.DoughariH.J.P.A.NdakidemiI.S.HumanS.Benade2011The ecology, biology and pathogenesis of Acinetobacter spp.: an overviewMicrobes Environ2610111210.1264/jsme2.ME1017921502736Search in Google Scholar

Endo S., H. Yano, H. Kanamori, S. Inomata, T. Aoyagi, M. Hatta, Y. Gu, K. Tokuda, M. Kitagawa and M. Kaku. 2014. High frequency of Acinetobacter soli among Acinetobacter isolates causing bacteremia at a tertiary hospital in Japan. J. Clin. Microbiol. 52: 911–915.EndoS.H.YanoH.KanamoriS.InomataT.AoyagiM.HattaY.GuK.TokudaM.KitagawaM.Kaku2014High frequency of Acinetobacter soli among Acinetobacter isolates causing bacteremia at a tertiary hospital in JapanJ. Clin. Microbiol5291191510.1128/JCM.03009-13395775024403303Search in Google Scholar

Frickmann H., A. Essig, R.M. Hagen, M. Riecker, K. Jerke, D. Ellison and S. Poppert. 2011. Rapid identification of Acinetobacter spp. by fluorescence in situ hybridization (FISH) from colony and blood culture material. Eur. J. Microbiol. Immunol. 1: 289–296.FrickmannH.A.EssigR.M.HagenM.RieckerK.JerkeD.EllisonS.Poppert2011Rapid identification of Acinetobacter spp. by fluorescence in situ hybridization (FISH) from colony and blood culture materialEur. J. Microbiol. Immunol128929610.1556/EuJMI.1.2011.4.4391813124516735Search in Google Scholar

Gu Z., Y. Han, T. Meng, S. Zhao, X. Zhao, C. Gao and W. Huang. 2016. Risk factors and clinical outcomes for patients with Acinetobacter baumannii bacteremia. Medicine. 95: e2943.GuZ.Y.HanT.MengS.ZhaoX.ZhaoC.GaoW.Huang2016Risk factors and clinical outcomes for patients with Acinetobacter baumannii bacteremiaMedicine95e294310.1097/MD.0000000000002943Search in Google Scholar

Hall G.S. 2015. Nonfermenting and miscellaneous Gram-negative bacilli, pp. 474–494. In: Mahon C.R., D.C. Lehman and G. Manuselis (eds). Textbook of Diagnostic Microbiology. Saunders Elsevier Maryland Heights, Missouri.HallG.S.2015Nonfermenting and miscellaneous Gram-negative bacilli,pp. 474494.In:MahonC.R.D.C.LehmanG.Manuselis(eds).Textbook of Diagnostic MicrobiologySaunders Elsevier Maryland HeightsMissouriSearch in Google Scholar

Hochedez P., E. Hope-Rapp, C. Olive, M. Nicolas, G. Beaucaire and A. Cabié. 2010. Bacteremia caused by Aeromonas species (corrected) complex in the Caribbean Islands of Martinique and Guadeloupe. Am. J. Trop. Med. Hyg. 83: 1123–1127.HochedezP.E.Hope-RappC.OliveM.NicolasG.BeaucaireA.Cabié2010Bacteremia caused by Aeromonas species (corrected) complex in the Caribbean Islands of Martinique and GuadeloupeAm. J. Trop. Med. Hyg831123112710.4269/ajtmh.2010.10-0063Search in Google Scholar

Hogardt M., K. Trebesius, A.M. Geiger, M. Hornef, J. Rosenecker and J. Heesemann. 2000. Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients. J. Clin. Microbiol. 38: 818–825.HogardtM.K.TrebesiusA.M.GeigerM.HornefJ.RoseneckerJ.Heesemann2000Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patientsJ. Clin. Microbiol3881882510.1128/JCM.38.2.818-825.2000Search in Google Scholar

Janda J.M. and S.L. Abbott. 2014. The genus Shewanella: from the briny depths below to human pathogen. Crit. Rev. Microbiol. 40: 293–312.JandaJ.M.S.L.Abbott2014The genus Shewanella: from the briny depths below to human pathogenCrit. Rev. Microbiol4029331210.3109/1040841X.2012.726209Search in Google Scholar

Lee S., C. Malone and P.F. Kemp. 1993. Use of multiple 16S rRNA-targeted fluorescent-probes to increase signal strength and measure cellular RNA from natural planktonic bacteria. Mar. Ecol. Prog. Ser. 101: 193–201.LeeS.C.MaloneP.F.Kemp1993Use of multiple 16S rRNA-targeted fluorescent-probes to increase signal strength and measure cellular RNA from natural planktonic bacteriaMar. Ecol. Prog. Ser10119320110.3354/meps101193Search in Google Scholar

Moosavian M., S. Tajbakhsh and A.R. Samarbaf-Zadeh. 2007. Rapid detection of clarithromycin-resistant Helicobacter pylori in patients with dyspepsia by fluorescent in situ hybridization (FISH) compared with the E-test. Ann. Saudi. Med. 27: 84–88.MoosavianM.S.TajbakhshA.R.Samarbaf-Zadeh2007Rapid detection of clarithromycin-resistant Helicobacter pylori in patients with dyspepsia by fluorescent in situ hybridization (FISH) compared with the E-testAnn. Saudi. Med27848810.5144/0256-4947.2007.84Search in Google Scholar

Moter A. and U.B. Göbel. 2000. Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J. Microbiol. Methods. 41: 85–112.MoterA.U.B.Göbel2000Fluorescence in situ hybridization (FISH) for direct visualization of microorganismsJ. Microbiol. Methods418511210.1016/S0167-7012(00)00152-4Search in Google Scholar

Munson E.L., D.J. Diekema, S.E. Beekmann, K.C. Chapin and G.V. Doern. 2003. Detection and treatment of bloodstream infection: laboratory reporting and antimicrobial management. J. Clin. Microbiol. 41: 495–497.MunsonE.L.D.J.DiekemaS.E.BeekmannK.C.ChapinG.V.Doern2003Detection and treatment of bloodstream infection: laboratory reporting and antimicrobial managementJ. Clin. Microbiol4149549710.1128/JCM.41.1.495-497.200314961112517905Search in Google Scholar

Peleg A.Y., Y. Tilahun, M.J. Fiandaca, E.M. D’Agata, L. Venkataraman, R.C. Moellering, Jr. and G.M. Eliopoulos. 2009. Utility of peptide nucleic acid fluorescence in situ hybridization for rapid detection of Acinetobacter spp. and Pseudomonas aeruginosa. J. Clin. Microbiol. 47: 830–832.PelegA.Y.Y.TilahunM.J.FiandacaE.M.D’AgataL.VenkataramanR.C.MoelleringJr.G.M.Eliopoulos2009Utility of peptide nucleic acid fluorescence in situ hybridization for rapid detection of Acinetobacter spp. and Pseudomonas aeruginosaJ. Clin. Microbiol4783083210.1128/JCM.01724-08265094219116347Search in Google Scholar

Peters R.P., P.H. Savelkoul, A.M. Simoons-Smit, S.A. Danner, C.M. Vandenbroucke-Grauls and M.A. van Agtmael. 2006. Faster identification of pathogens in positive blood cultures by fluorescence in situ hybridization in routine practice. J. Clin. Microbiol. 44: 119–123.PetersR.P.P.H.SavelkoulA.M.Simoons-SmitS.A.DannerC.M.Vandenbroucke-GraulsM.A.van Agtmael2006Faster identification of pathogens in positive blood cultures by fluorescence in situ hybridization in routine practiceJ. Clin. Microbiol4411912310.1128/JCM.44.1.119-123.2006135196416390958Search in Google Scholar

Phillips M. 2015. Acinetobacter species, pp. 2552–2558. In: Bennett J.E., R. Dolin and M.J. Blaser (eds). Mandell, Douglas, and Bennett’s Principles and Practice of Infectious Diseases. Elsevier Saunders, Philadelphia.PhillipsM.2015Acinetobacter species,pp. 25522558.In:BennettJ.E.R.DolinM.J.Blaser(eds).Mandell, Douglas, and Bennett’s Principles and Practice of Infectious DiseasesElsevier SaundersPhiladelphia10.1016/B978-1-4557-4801-3.00224-1Search in Google Scholar

Poppert S., M. Riecker and A. Essig. 2010. Rapid identification of Propionibacterium acnes from blood cultures by fluorescence in situ hybridization. Diagn. Microbiol. Infect. Dis. 66: 214–216.PoppertS.M.RieckerA.Essig2010Rapid identification of Propionibacterium acnes from blood cultures by fluorescence in situ hybridizationDiagn. Microbiol. Infect. Dis6621421610.1016/j.diagmicrobio.2009.09.007Search in Google Scholar

Tajbakhsh S., S. Gharibi, K. Zandi and R. Yaghobi. 2013a. Use of a modified fluorescent in situ hybridization procedure to improve the identification of Streptococcus pneumoniae in blood cultures. Acta. Microbiol. Immunol. Hung. 60: 303–311.TajbakhshS.S.GharibiK.ZandiR.Yaghobi2013aUse of a modified fluorescent in situ hybridization procedure to improve the identification of Streptococcus pneumoniae in blood culturesActa. Microbiol. Immunol. Hung6030331110.1556/AMicr.60.2013.3.6Search in Google Scholar

Tajbakhsh S., S. Gharibi, K. Zandi, R. Yaghobi and G. Asayesh. 2011. Rapid detection of Streptococcus pyogenes in throat swab specimens by fluorescent in situ hybridization. Eur. Rev. Med. Pharmacol. Sci. 15: 313–317.TajbakhshS.S.GharibiK.ZandiR.YaghobiG.Asayesh2011Rapid detection of Streptococcus pyogenes in throat swab specimens by fluorescent in situ hybridizationEur. Rev. Med. Pharmacol. Sci15313317Search in Google Scholar

Tajbakhsh S., M. Hogardt, J. Heesemann, C. Grzonka and K. Adler. 2008. Detection of Pseudomonas aeruginosa in sputum samples by modified fluorescent in situ hybridization. Afr. J. Biotechnol. 7: 553–556.TajbakhshS.M.HogardtJ.HeesemannC.GrzonkaK.Adler2008Detection of Pseudomonas aeruginosa in sputum samples by modified fluorescent in situ hybridizationAfr. J. Biotechnol7553556Search in Google Scholar

Tajbakhsh S., M. Norouzi Esfahani, M. Emaneini, N. Motamed, E. Rahmani and S. Gharibi. 2013b. Identification of Streptococcus agalactiae by fluorescent in situ hybridization compared to culturing and the determination of prevalence of Streptococcus agalactiae colonization among pregnant women in Bushehr, Iran. BMC. Infect. Dis. 13: 420.TajbakhshS.M.Norouzi EsfahaniM.EmaneiniN.MotamedE.RahmaniS.Gharibi2013bIdentification of Streptococcus agalactiae by fluorescent in situ hybridization compared to culturing and the determination of prevalence of Streptococcus agalactiae colonization among pregnant women in Bushehr, IranBMC. Infect. Dis1342010.1186/1471-2334-13-420Search in Google Scholar

Wagner M., R. Erhart, W. Manz, R. Amann, H. Lemmer, D. Wedi and K.H. Schleifer. 1994. Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl. Environ. Microbiol. 60: 792–800.WagnerM.R.ErhartW.ManzR.AmannH.LemmerD.WediK.H.Schleifer1994Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludgeAppl. Environ. Microbiol6079280010.1128/aem.60.3.792-800.1994Search in Google Scholar

Wellinghausen N., K. Nöckler, A. Sigge, M. Bartel, A. Essig and S. Poppert. 2006. Rapid detection of Brucella spp. in blood cultures by fluorescence in situ hybridization. J. Clin. Microbiol. 44: 1828–1830.WellinghausenN.K.NöcklerA.SiggeM.BartelA.EssigS.Poppert2006Rapid detection of Brucella spp. in blood cultures by fluorescence in situ hybridizationJ. Clin. Microbiol441828183010.1128/JCM.44.5.1828-1830.2006Search in Google Scholar

Wong E.H., G. Subramaniam, P. Navaratnam and S.D. Sekaran. 2007. Rapid detection of non-enterobacteriaceae directly from positive blood culture using fluorescent in situ hybridization. Indian. J. Med. Microbiol. 25: 391–394.WongE.H.G.SubramaniamP.NavaratnamS.D.Sekaran2007Rapid detection of non-enterobacteriaceae directly from positive blood culture using fluorescent in situ hybridizationIndian. J. Med. Microbiol2539139410.1016/S0255-0857(21)02058-2Search in Google Scholar

Zwirglmaier K. 2005. Fluorescence in situ hybridisation (FISH) – the next generation. FEMS. Microbiol. Lett. 246: 151–158.ZwirglmaierK.2005Fluorescence in situ hybridisation (FISH) – the next generationFEMS. Microbiol. Lett24615115810.1016/j.femsle.2005.04.01515899400Search in Google Scholar