[
Acuna-Askar K., M.A. de la Torre-Torres, M.J. Guerrero-Munoz, M.T. Garza-Gonzalez, B. Chavez-Gomez, I.P. Rodriguez-Sanchez and H.A. Barrera-Saldana. 2006. Biodegradation kinetics of BTE-OX and MTBE by a diesel-grown biomass. Water Sci. Technol. 53(11): 197–204.
]Search in Google Scholar
[
Bagnéris C., R. Cammack and J.R. Mason. 2005. Subtle difference between benzene and toluene dioxygenases of Pseudomonas putida. Appl. Environ. Microb. 71: 1570–1580.10.1128/AEM.71.3.1570-1580.2005106517215746362]Search in Google Scholar
[
Bell T.H., E. Yergeau, D.F. Juck, L.G. Whyte and C.W. Greer. 2013. Alteration of microbial community structure affects diesel biodegradation in an Arctic soil. FEMS Microbiol. Lett. 85: 51–61.10.1111/1574-6941.1210223488635
]Search in Google Scholar
[
Ciric L., J.C. Philp and A.S. Whiteley. 2010. Hydrocarbon utilization within a diesel-degrading bacterial consortium. FEMS Microbiol. Lett. 303: 116–122.10.1111/j.1574-6968.2009.01871.x20030730
]Search in Google Scholar
[
Cyplik P., M. Schmidt, A. Szulc, R. Marecik, P. Lisiecki, H.J. Heipieper, M. Owsianiak, M. Vaishtein and L. Chrzanowski. 2011. Relative quantitative PCR to assess bacterial community dynamics during biodegradation of diesel and biodiesel fuels under various aeration conditions. Bioresource Technol. 102: 4347–43562.10.1016/j.biortech.2010.12.06821239170
]Search in Google Scholar
[
Dalvi S., C. Nicholson, F. Najar, B.A. Roe, P. Canaan, S.D. Hartson and B.Z. Fathepure. 2014. Arhodomonas sp. Strain Seminole and its genetic potential to degrade aromatic compounds under highsalinity conditions. Appl. Environ. Microb. 80(21): 6664–6676.
]Search in Google Scholar
[
Díaz E., A. Fernández, M.A. Prieto and J.L. García. 2001. Biodegradation of aromatic compounds by Escherichia coli. Microbiol. Mol. Biol. R. 65: 523–569.10.1128/MMBR.65.4.523-569.20019904011729263
]Search in Google Scholar
[
Dean B.J. 1985. Recent findings on the genetic toxicity of benzene, toluene, xylenes, and phenol. Mutat Res. 145: 153–181.
]Search in Google Scholar
[
Demanèche S., C. Meyer, J. Micoud, M. Louwagie, J.C. Willison and Y. Jouanneau. 2004. Identification and functional analysis of two aromatic ring-hydroxylating dioxygenases from a Sphingomonas strain degrading various polycyclic aromatic hydrocarbons. Appl. Environ. Microb. 70: 6714–6725.10.1128/AEM.70.11.6714-6725.200452523815528538
]Search in Google Scholar
[
Fong K.P., C.B. Goh and H.M. Tan. 1996. Characterization and expression of the plasmid-borne bedD gene from Pseudomonas putida ML2, which codes for a NAD1-dependent cis-benzene dihydrodiol dehydogenase. J. Bacteriol. 178: 5592–5601.
]Search in Google Scholar
[
Gescher J., O. Ismail, E. Ölgeschläger, W. Eisenreich, J. Wörth and G. Fuchs. 2006. Aerobic benzoyl-coenzyme A (CoA) catabolic pathway in Azoarcus evansii: conversion of ring cleavage product by 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase. J. Bacteriol. 18(8): 2919–2927.10.1128/JB.188.8.2919-2927.2006144699716585753
]Search in Google Scholar
[
Gibson D.T. and V. Subramanian. 1984. Microbial degradation of aromatic hydrocarbons, pp. 181–252. In: Gibson D.T. (ed.) Microbial degradation of organic compounds. Marcel Dekker, New York, NY.
]Search in Google Scholar
[
Kane R.S., A.Y. Chakicherla, P.S. Chain, R. Schmidt, M.W. Shin, T.C. Legler, K.M. Scow, F.W. Larimer, S.M. Lucas, P.M. Richardson and others. 2007. Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. J. Bacteriol. 189: 1931–1945.10.1128/JB.01259-06185572817158667
]Search in Google Scholar
[
Kim D., J.C. Chae, G.J. Zylstra, Y.S. Kim, S.K. Kim, N.H. Nam, Y.M. Kim and E. Kim. 2004. Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17. Appl. Environ. Microb. 70: 7086–7092.
]Search in Google Scholar
[
Lawniczak L., E. Kaczorek and A. Olszanowski. 2011. The influence of cell immobilization by biofilm forming on the biodegradation capabilities of bacterial consortia. World J. Microb. Biot. 27: 1183–1188.10.1007/s11274-010-0566-5
]Search in Google Scholar
[
Lima-Morales D., R. Jáuregui, A. Camarinha-Silva, R. Geffers, D.H. Pieper and R. Vilchez-Vargas. 2016. Linking microbial community and catabolic gene structures during the adaptation of three contaminated soils under continuous long term pollutant stress. Appl Environ Microb. 82(7): 2227–37.10.1128/AEM.03482-15480751226850298
]Search in Google Scholar
[
Lisiecki P., L. Chrzanowski, A. Szulc, L. Lawniczak, W. Bialas, M. Dziadas, M. Owsianiak, J. Staniewski, P. Cyplik, R. Marecik and others. 2014. Biodegradation of diesel/biodiesel blends in saturated sand microcosms. Fuel 116:321–327.10.1016/j.fuel.2013.08.009
]Search in Google Scholar
[
Lee S.K., and S.B. Lee. 2001. Isolation and characterization of a thermotolerant bacterium Ralstonia sp. strain PHS1 that degrades benzene, toluene, ethylbenzene, and o-xylene. Appl. Environ. Microb. 56: 270–275.
]Search in Google Scholar
[
Maeda T., Y. Takahaxhi, H. Suenaga, A. Suyama, M. Goto and K. Furukawa. 2001. Functional analyses of bph-tod hybrid dioxygenases, which exhibits high degradation activity toward trichoroethylene. J. Biol. Chem. 276: 29833–29838.
]Search in Google Scholar
[
Morlett-Chávez J.A., J.A. Ascacio-Martínez, A.M. Rivas-Estilla, J.F. Velázquez-Vadillo, W.E. Haskins, H.A. Barrera-Saldaña and K. Acuña-Askar. 2010. Kinetics of BTEX biodegradation by a microbial consortium acclimatized to unleaded gasoline and bacterial strains isolated from it. Int. Biodeter. Biodegr. 64(7): 581–587.
]Search in Google Scholar
[
Owsianiak M., L. Chrzanowski, A. Szulc, J. Staniewski, A. Olszanowski, A.K. Olejnik-Schmidt and H.J. Heipieper. 2009. Biodegradation of diesel/biodiesel blends by a consortium of hydrocarbon degraders: effect of the type of blend and the addition of biosurfactants. Biosource Technol. 100: 1497–1500.10.1016/j.biortech.2008.08.028
]Search in Google Scholar
[
Peters F., D. Heintz, J. Johannes, A. van Dorsselaer and M. Boll. 2007. Genes, enzymes, and regulation of para-cresol metabolism in Geobacter metallireducens. J. Bacteriol. 189: 4729–4738.
]Search in Google Scholar
[
Patrauchan M.A., C. Florizone, S. Eapen, L. Gómez-Gil, B. Sethuraman, M. Fukuda, J. Davies, W.W. Mohn and L.D. Eltis. 2008. roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA. J. Bacteriol. 190: 37–47.10.1128/JB.01122-07
]Search in Google Scholar
[
Pieper D.H. and W. Reineke. 2000. Engineering bacteria for bioremediation. Curr. Opin. Biotech. 11: 262–270.10.1016/S0958-1669(00)00094-X
]Search in Google Scholar
[
Potter T.L. 1992. Fingerprinting petroleum products: unleaded gasolines, pp. 83–92. In: Kostecki P.T. and E.J. Calabrese (ed.). Petroleum contaminated soils, vol 2. Lewis Publishers, Chelsea, Mich.
]Search in Google Scholar
[
Ramos-González M.I., A. Ben-Bassat, M.J. Camposm and J.L. Ramos. 2003. Genetic engineering of a highly solvent-tolerant Pseudomonas putida strain for biotransformation of toluene to p-hydroxybenzoate. Appl. Environ. Microb. 69: 5120–5127.10.1128/AEM.69.9.5120-5127.2003
]Search in Google Scholar
[
Sabirova J.S., M. Ferrer, D. Regenhardt, K.N. Timmis and P.N. Golyshin. 2006. Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization. J. Bacteriol. 188: 3763–3773.10.1128/JB.00072-06
]Search in Google Scholar
[
Shöber U., C. Thiel and D. Jendrossek. 2000. Poly (3-hydroxyvalerato) depolimerase of Pseudomonas lemoignei. Appl. Environ. Microb. 66(4): 1385–1392.
]Search in Google Scholar
[
Smith R.K. 1990. The biodegradation of aromatic hydrocarbons by bacteria. Biodegradation 1: 191–206.10.1007/BF00058836
]Search in Google Scholar
[
Szczepaniak Z., J. Czarny, J. Staninska-Pieta, P. Lisiecki, A. Zgoła-Grześkowiak, P. Cyplik, L. Chrzanowski, L. Wolko, R. Marecik, W. Juzwa and others. 2016. Influence of soil contamination with PAH on microbial community dynamics and expression level of genes responsible for biodegradation of PAH and production of rhamnolipids. Environ. Sci. Pollut. Res. 23(22): 23043–23056.10.1007/s11356-016-7500-9
]Search in Google Scholar
[
Tarasev M., C.S. Kaddis, S. Yin, J.A. Loo, J. Burgner and D.P. Ballou. 2007. Similar enzymes, different strctures: phtalato dyoxigenases is an α3α3 hexamer, not an α3β3 trimer like “normal” rieske oxygenases. Arch. Biochem. Biophys. 466: 31–39.
]Search in Google Scholar
[
Tsao C.W., H.G. Song and R. Bartha. 1998. Metabolism of benzene, toluene and xylene hydrocarbons in soil. Appl. Environ. Microb. 64: 4924–4929.
]Search in Google Scholar
[
Witzig R., H. Junca, H.J. Hecht and D.H. Pieper. 2006. Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: Links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases. Appl. Environ. Microb. 72: 3504–3514.10.1128/AEM.72.5.3504-3514.2006
]Search in Google Scholar
[
Zylstra, G.J. and D.T. Gibson. 1989. Toluene degradation by Pseudomonas putida F1. J. Biol. Chem. 264: 1940–1946.
10.1016/S0021-9258(18)63793-7
]Search in Google Scholar
