[
Altschul S.F., T.L. Madden, A.A. Schäffer, J. Zhang, Z. Zhang, W. Miller and D.J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389–3402.10.1093/nar/25.17.33891469179254694
]Search in Google Scholar
[
Chun J., J.H. Lee, Y. Jung, M. Kim, S. Kim, B.K. Kim and Y.W. Lim. 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57: 2259–2261.10.1099/ijs.0.64915-017911292
]Search in Google Scholar
[
Dai X., Y. Zhu, Y. Luo, L. Song, D. Liu, L. Liu, F. Chen, M. Wang, J. Li, X. Zeng, Z. Dong, S. Hu, L. Li, J. Xu, L. Huang and X. Dong. 2012. Metagenomic insights into the fibrolytic microbiome in yak rumen. PLoS One 7.10.1371/journal.pone.0040430339665522808161
]Search in Google Scholar
[
Goodfellow M., M. Collins and D. Minnikin. 1980. Fatty acid and polar lipid composition in the classification of Kurthia. J. Appl. Microbiol. 48: 269–276.10.1111/j.1365-2672.1980.tb01226.x6780505
]Search in Google Scholar
[
Guan L., K.H. Cho and J.-H. Lee. 2011. Analysis of the cultivable bacterial community in jeotgal, a Korean salted and fermented seafood, and identification of its dominant bacteria. Food Microbiol. 28: 101–113.
]Search in Google Scholar
[
Huse S.M., L. Dethlefsen, J.A. Huber, D.M. Welch, D.A. Relman and M.L. Sogin. 2008. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4: 1–10.10.1371/annotation/3d8a6578-ce56-45aa-bc71-05078355b851
]Search in Google Scholar
[
Ito H. and K. Dou. 1994. Microorganisms of miso and soysauce. Jpn. J. Food Microbiol. 11: 151–157.10.5803/jsfm.11.151
]Search in Google Scholar
[
Kakizaki E., Y. Ogura, S. Kozawa, S. Nishida, T. Uchiyama, T. Hayashi and N. Yukawa. 2012. Detection of diverse aquatic microbes in blood and organs of drowning victims: First meta-genomic approach using high-throughput 454-pyrosequencing. Forensic Sci. Int. 220: 135–146.10.1016/j.forsciint.2012.02.01022424673
]Search in Google Scholar
[
Kapardar R. K., R. Ranjan, A. Grover, M. Puri and R. Sharma. 2010. Identification and characterization of genes conferring salt tolerance to Escherichia coli from pond water metagenome. Bioresour. Technol. 101: 3917–3924.10.1016/j.biortech.2010.01.01720133127
]Search in Google Scholar
[
Liaw R.-B., M.-P. Cheng, M.-C. Wu and C.-Y. Lee. 2010. Use of metagenomic approaches to isolate lipolytic genes from activated sludge. Bioresour. Technol. 101: 8323–8329.10.1016/j.biortech.2010.05.09120639117
]Search in Google Scholar
[
Mamlouk D., C. Hidalgo, M.J. Torija and M. Gullo. 2011. Evaluation and optimisation of bacterial genomic DNA extraction for no-culture techniques applied to vinegars. Food Microbiol. 28: 1374–1379.10.1016/j.fm.2011.06.00921839388
]Search in Google Scholar
[
Ni Z., W. Xu, W. Dou, H. Xu and Z. Xu. 2010. Comparison of total microbial DNA extraction methods from solid-culture of Zhenjiang vinegar. Wei Sheng Wu Xue Bao 50: 119.
]Search in Google Scholar
[
Ovreås L., L. Forney, F.L. Daae and V. Torsvik. 1997. Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplifiedgene fragments coding for 16S rRNA. Appl. Environ. Microbiol. 63: 3367–3373.
]Search in Google Scholar
[
Röling W.F.M., A. Apriyantono and H.W. van Verseveld. 1996. Comparison between traditional and industrial soy sauce (kecap) fermentation in Indonesia. J. Ferment. Bioeng. 81: 275–278.10.1016/0922-338X(96)82223-9
]Search in Google Scholar
[
Steele D.B., M.J. Fiske, B.P. Steele and V.C. Kelley. 1992. Production of a low-molecular-weight, alkaline-active, thermostable protease by a novel, spiral-shaped bacterium, Kurthia spiroforme, sp. nov. Enzyme Microb. Technol. 14: 358–360.10.1016/0141-0229(92)90003-7
]Search in Google Scholar
[
Takazane S., T. Endo, O. Shida, H. Tagami, H. Takagi and K. Kadowaki. 1998. Influence of Bacillus species in Shoyu Koji on Shoyu brewing (part 1) isolation and identification of antifungal antibiotics producing bacteria. Shoyu Kenkyujyo Kenkyu Houkoku 24: 77–82.
]Search in Google Scholar
[
Tanaka Y., J. Watanabe and Y. Mogi. 2012. Monitoring of the microbial communities involved in the soy sauce manufacturing process by PCR-denaturing gradient gel electrophoresis. Food Microbiol. 31: 100–106.10.1016/j.fm.2012.02.005
]Search in Google Scholar
[
Tanasupawat S., J. Thongsanit, S. Okada and K. Komagata. 2002. Lactic acid bacteria isolated from soy sauce mash in Thailand. J. Gen. Appl. Microbiol. 48: 201–209.10.2323/jgam.48.201
]Search in Google Scholar
[
Torsvik V. and L. Øvreås. 2002. Microbial diversity and function in soil: from genes to ecosystems. Curr. Opin. Microbiol. 5: 240–245.10.1016/S1369-5274(02)00324-7
]Search in Google Scholar
[
Wah T.T., S. Walaisri, A. Assavanig, N. Niamsiri and S. Lertsiri. 2013. Co-culturing of Pichia guilliermondii enhanced volatile flavor compound formation by Zygosaccharomyces rouxii in the model system of Thai soy sauce fermentation. Int. J. Food Microbiol. 160: 282–289.10.1016/j.ijfoodmicro.2012.10.02223290236
]Search in Google Scholar
[
Wei Q.Z., H.B. Wang, Z.X. Chen, Z.J. Lv, Y.F. Xie and F.P. Lu. 2013. Profiling of dynamic changes in the microbial community during the soy sauce fermentation process. Appl. Microbiol. Biot. 97: 9111–9119.10.1007/s00253-013-5146-924037306
]Search in Google Scholar
[
Whiteley A.S., S. Jenkins, I. Waite, N. Kresoje, H. Payne, B. Mullan, R. Allcock and A. O’Donnell. 2012. Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform. J. Microbiol. Methods 91: 80–88.10.1016/j.mimet.2012.07.00822849830
]Search in Google Scholar
