Identification and Characterization of a Novel Recombinant Porcine Astrovirus from Pigs in Anhui, China

Altschul S, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997 Sep 1;25(17):3389–3402. https://doi.org/10.1093/nar/25.17.3389AltschulSMaddenTLSchäfferAAZhangJZhangZMillerWLipmanDJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res.1997Sep 1;25(17):3389–3402. https://doi.org/10.1093/nar/25.17.338910.1093/nar/25.17.33891469179254694Search in Google Scholar

Arruda B, Arruda P, Hensch M, Chen Q, Zheng Y, Yang C, Gatto IRH, Ferreyra FM, Gauger P, Schwartz K, et al. Porcine Astrovirus Type 3 in central nervous system of swine with Polioencephalomyelitis. Emerg Infect Dis. 2017 Dec;23(12):2097–2100. https://doi.org/10.3201/eid2312.170703ArrudaBArrudaPHenschMChenQZhengYYangCGattoIRHFerreyraFMGaugerPSchwartzKPorcine Astrovirus Type 3 in central nervous system of swine with Polioencephalomyelitis. Emerg Infect Dis.2017Dec;23(12):2097–2100. https://doi.org/10.3201/eid2312.17070310.3201/eid2312.170703570824729148383Search in Google Scholar

Bidin M, Bidin Z, Majnaric D, Tisljar M, Lojkic I. Circulation and phylogenetic relationship of chicken and turkey-origin astroviruses detected in domestic ducks (Anas platyrhynchos domesticus). Avian Pathol. 2012a;41(6):555–562. https://doi.org/10.1080/03079457.2012.733340BidinMBidinZMajnaricDTisljarMLojkicI. Circulation and phylogenetic relationship of chicken and turkey-origin astroviruses detected in domestic ducks (Anas platyrhynchos domesticus). Avian Pathol.2012a;41(6):555–562. https://doi.org/10.1080/03079457.2012.73334010.1080/03079457.2012.73334023237368Search in Google Scholar

Bidin M, Lojkic I, Tisljar M, Bidin Z, Majnaric D. Astroviruses associated with stunting and pre-hatching mortality in duck and goose embryos. Avian Pathol. 2012b;41(1):91–97. https://doi.org/10.1080/03079457.2011.642796BidinMLojkicITisljarMBidinZMajnaricD. Astroviruses associated with stunting and pre-hatching mortality in duck and goose embryos. Avian Pathol.2012b;41(1):91–97. https://doi.org/10.1080/03079457.2011.64279610.1080/03079457.2011.64279622845326Search in Google Scholar

Blomström AL, Widén F, Hammer AS, Belák S, Berg M. Detection of a novel astrovirus in brain tissue of mink suffering from shaking mink syndrome by use of viral metagenomics. J Clin Microbiol. 2010 Dec;48(12):4392–4396. https://doi.org/10.1128/JCM.01040-10BlomströmALWidénFHammerASBelákSBergM. Detection of a novel astrovirus in brain tissue of mink suffering from shaking mink syndrome by use of viral metagenomics.J Clin Microbiol.2010Dec;48(12):4392–4396. https://doi.org/10.1128/JCM.01040-1010.1128/JCM.01040-10300847620926705Search in Google Scholar

Bosch AGS, Krishna NK, Méndez E, Monroe SS, Pantin-Jackwood M, Schultz-Cherry S. Family Astroviridae. In: King AMQ, Lefkowitz E, Adams MJ, Carstens EB, edotors. Virus taxonomy: classification and nomenclature of viruses (ninth report of the International Committee on the Taxonomy of Viruses). New York (USA): Elsevier Academic Press; 2011, p. 953–959.BoschAGSKrishnaNKMéndezEMonroeSSPantin-JackwoodMSchultz-CherryS. Family Astroviridae. In: KingAMQLefkowitzEAdamsMJCarstensEB, edotors. Virus taxonomy: classification and nomenclature of viruses (ninth report of the International Committee on the Taxonomy of Viruses). New York (USA): Elsevier Academic Press; 2011, p. 953–959.Search in Google Scholar

Bouzalas IG, Wüthrich D, Walland J, Drögemüller C, Zurbriggen A, Vandevelde M, Oevermann A, Bruggmann R, Seuberlich T. Neurotropic astrovirus in cattle with nonsuppurative encephalitis in Europe. J Clin Microbiol. 2014 Sep;52(9):3318–3324. https://doi.org/10.1128/JCM.01195-14BouzalasIGWüthrichDWallandJDrögemüllerCZurbriggenAVandeveldeMOevermannABruggmannRSeuberlichT. Neurotropic astrovirus in cattle with nonsuppurative encephalitis in Europe.J Clin Microbiol.2014Sep;52(9):3318–3324. https://doi.org/10.1128/JCM.01195-1410.1128/JCM.01195-14431315724989603Search in Google Scholar

Bridger JC. Detection by electron microscopy of caliciviruses, astroviruses and rotavirus-like particles in the faeces of piglets with diarrhoea. Vet Rec. 1980 Dec 6;107(23):532–533.BridgerJC. Detection by electron microscopy of caliciviruses, astroviruses and rotavirus-like particles in the faeces of piglets with diarrhoea. Vet Rec.1980Dec 6;107(23):532–533.Search in Google Scholar

Brnic D, Jemersic L, Keros T, Prpic J, High prevalence and genetic heterogeneity of porcine astroviruses in domestic pigs. Vet J. 2014; 202(2):390–392. https://doi.org/0.1016/j.tvjl.2014.08.015BrnicDJemersicLKerosTPrpicJ, High prevalence and genetic heterogeneity of porcine astroviruses in domestic pigs. Vet J.2014; 202(2):390–392. https://doi.org/0.1016/j.tvjl.2014.08.01510.1016/j.tvjl.2014.08.01525199509Search in Google Scholar

De Benedictis P, Schultz-Cherry S, Burnham A, Cattoli G. Astrovirus infections in humans and animals – Molecular biology, genetic diversity, and interspecies transmissions. Infect Genet Evol. 2011b Oct;11(7):1529–1544. https://doi.org/10.1016/j.meegid.2011.07.024De BenedictisPSchultz-CherrySBurnhamACattoliG. Astrovirus infections in humans and animals – Molecular biology, genetic diversity, and interspecies transmissions.Infect Genet Evol.2011bOct;11(7):1529–1544. https://doi.org/10.1016/j.meegid.2011.07.02410.1016/j.meegid.2011.07.024718576521843659Search in Google Scholar

Deng X, Naccache SN, Ng T, Federman S, Li L, Chiu CY, Delwart EL. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res. 2015 Apr 20;43(7):e46. https://doi.org/10.1093/nar/gkv002DengXNaccacheSNNgTFedermanSLiLChiuCYDelwartEL. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res.2015Apr 20;43(7):e46. https://doi.org/10.1093/nar/gkv00210.1093/nar/gkv002440250925586223Search in Google Scholar

Indik S, Valíček L, Šmíd B, Dvořáková H, Rodák L. Isolation and partial characterization of a novel porcine astrovirus. Vet Microbiol. 2006 Oct;117(2–4):276–283. https://doi.org/10.1016/j.vetmic.2006.06.020IndikSValíčekLŠmídBDvořákováHRodákL. Isolation and partial characterization of a novel porcine astrovirus. Vet Microbiol.2006Oct;117(2–4):276–283. https://doi.org/10.1016/j.vetmic.2006.06.02010.1016/j.vetmic.2006.06.02016879934Search in Google Scholar

Kattoor JJ, Malik YS, Saurabh S, Sircar S, Vinodhkumar OR, Bora DP, Dhama K, Ghosh S, Banyai K, Touil N, et al. First report and genetic characterization of porcine astroviruses of lineage 4 and 2 in diarrhoeic pigs in India. Transbound Emerg Dis. 2019 Jan;66(1): 47–53. https://doi.org/10.1111/tbed.13058KattoorJJMalikYSSaurabhSSircarSVinodhkumarORBoraDPDhamaKGhoshSBanyaiKTouilNFirst report and genetic characterization of porcine astroviruses of lineage 4 and 2 in diarrhoeic pigs in India. Transbound Emerg Dis.2019Jan;66(1): 47–53. https://doi.org/10.1111/tbed.1305810.1111/tbed.1305830379411Search in Google Scholar

Lee MH, Jeoung HY, Park HR, Lim JA, Song JY, An DJ. Phylogenetic analysis of porcine astrovirus in domestic pigs and wild boars in South Korea. Virus Genes. 2013 Feb;46(1):175–181. https://doi.org/10.1007/s11262-012-0816-8LeeMHJeoungHYParkHRLimJASongJYAnDJ. Phylogenetic analysis of porcine astrovirus in domestic pigs and wild boars in South Korea. Virus Genes.2013Feb;46(1):175–181. https://doi.org/10.1007/s11262-012-0816-810.1007/s11262-012-0816-8708931322965450Search in Google Scholar

Ling Y, Zhang X, Qi G, Yang S, Jingjiao L, Shen Q, Wang X, Cui L, Hua X, Deng X, et al. Viral metagenomics reveals significant viruses in the genital tract of apparently healthy dairy cows. Arch Virol. 2019 Apr;164(4):1059–1067. https://doi.org/10.1007/s00705-019-04158-4LingYZhangXQiGYangSJingjiaoLShenQWangXCuiLHuaXDengXViral metagenomics reveals significant viruses in the genital tract of apparently healthy dairy cows. Arch Virol.2019Apr;164(4):1059–1067. https://doi.org/10.1007/s00705-019-04158-410.1007/s00705-019-04158-430783771Search in Google Scholar

Liu Q, Wang H, Ling Y, Yang SX, Wang XC, Zhou R, Xiao YQ, Chen X, Yang J, Fu WG, et al. Viral metagenomics revealed diverse CRESS-DNA virus genomes in faeces of forest musk deer. Virol J. 2020 Dec;17(1):61. https://doi.org/10.1186/s12985-020-01332-yLiuQWangHLingYYangSXWangXCZhouRXiaoYQChenXYangJFuWGViral metagenomics revealed diverse CRESS-DNA virus genomes in faeces of forest musk deer. Virol J.2020Dec;17(1):61. https://doi.org/10.1186/s12985-020-01332-y10.1186/s12985-020-01332-y718360132334626Search in Google Scholar

Lv SL, Zhang HH, Li JY, Hu WQ, Song YT, Opriessnig T, Xiao CT. High genetic diversity and recombination events of porcine astrovirus strains identified from ill and asymptomatic pigs in 2017, Hunan Province, China. Virus Genes. 2019 Oct;55(5):673–681. https://doi.org/10.1007/s11262-019-01692-wLvSLZhangHHLiJYHuWQSongYTOpriessnigTXiaoCT. High genetic diversity and recombination events of porcine astrovirus strains identified from ill and asymptomatic pigs in 2017, Hunan Province, China. Virus Genes.2019Oct;55(5):673–681. https://doi.org/10.1007/s11262-019-01692-w10.1007/s11262-019-01692-w31372920Search in Google Scholar

Padmanabhan A, Hause BM. Detection and characterization of a novel genotype of porcine astrovirus 4 from nasal swabs from pigs with acute respiratory disease. Arch Virol. 2016 Sep;161(9):2575–2579. https://doi.org/10.1007/s00705-016-2937-1PadmanabhanAHauseBM. Detection and characterization of a novel genotype of porcine astrovirus 4 from nasal swabs from pigs with acute respiratory disease. Arch Virol.2016Sep;161(9):2575–2579. https://doi.org/10.1007/s00705-016-2937-110.1007/s00705-016-2937-127329081Search in Google Scholar

Reuter G, Pankovics P, Boros Á. Identification of a novel astrovirus in a domestic pig in Hungary. Arch Virol. 2011 Jan;156(1):125–128. https://doi.org/10.1007/s00705-010-0827-5ReuterGPankovicsPBorosÁ. Identification of a novel astrovirus in a domestic pig in Hungary. Arch Virol.2011Jan;156(1):125–128. https://doi.org/10.1007/s00705-010-0827-510.1007/s00705-010-0827-5708675320931250Search in Google Scholar

Rivera R, Nollens HH, Venn-Watson S, Gulland FMD, Wellehan JFX Jr. Characterization of phylogenetically diverse astroviruses of marine mammals. J Gen Virol. 2010 Jan 01;91(1):166–173. https://doi.org/10.1099/vir.0.015222-0RiveraRNollensHHVenn-WatsonSGullandFMDWellehanJFXJr.Characterization of phylogenetically diverse astroviruses of marine mammals.J Gen Virol.2010Jan 01;91(1):166–173. https://doi.org/10.1099/vir.0.015222-010.1099/vir.0.015222-019759240Search in Google Scholar

Sajewicz-Krukowska J, Domanska-Blicharz K. Nearly full-length genome sequence of a novel astrovirus isolated from chickens with ‘white chicks’ condition. Arch Virol. 2016 Sep;161(9):2581–2587. https://doi.org/10.1007/s00705-016-2940-6Sajewicz-KrukowskaJDomanska-BlicharzK. Nearly full-length genome sequence of a novel astrovirus isolated from chickens with ‘white chicks’ condition. Arch Virol.2016Sep;161(9):2581–2587. https://doi.org/10.1007/s00705-016-2940-610.1007/s00705-016-2940-6498740027339687Search in Google Scholar

Tassoni L, Zamperin G, Schiavon E, Vendramin V, Cavicchio L, Mion M, Tonon FT, Monne I, Beato MS. First whole genome characterization of porcine astrovirus detected in swine faeces in Italy. Vet Ital. 2019 Sep 30;55(3):221–229. https://doi.org/10.12834/VetIt.1873.9956.1TassoniLZamperinGSchiavonEVendraminVCavicchioLMionMTononFTMonneIBeatoMS. First whole genome characterization of porcine astrovirus detected in swine faeces in Italy. Vet Ital.2019Sep 30;55(3):221–229. https://doi.org/10.12834/VetIt.1873.9956.1Search in Google Scholar

Vu DL, Bosch A, Pintó R, Guix S. Epidemiology of classic and novel human astrovirus: gastroenteritis and beyond. Viruses. 2017 Feb 18;9(2):33. https://doi.org/10.3390/v9020033VuDLBoschAPintóRGuixS. Epidemiology of classic and novel human astrovirus: gastroenteritis and beyond. Viruses.2017Feb 18;9(2):33. https://doi.org/10.3390/v902003310.3390/v9020033533295228218712Search in Google Scholar

Xiao CT, Luo Z, Lv SL, Opriessnig T, Li RC, Yu XL. Identification and characterization of multiple porcine astrovirus genotypes in Hunan province, China. Arch Virol. 2017 Apr;162(4):943–952. https://doi.org/10.1007/s00705-016-3185-0XiaoCTLuoZLvSLOpriessnigTLiRCYuXL. Identification and characterization of multiple porcine astrovirus genotypes in Hunan province, China. Arch Virol.2017Apr;162(4):943–952. https://doi.org/10.1007/s00705-016-3185-010.1007/s00705-016-3185-027990567Search in Google Scholar

Yi S, Niu J, Wang H, Dong G, Guo Y, Dong H, Wang K, Hu G. Molecular characterization of feline astrovirus in domestic cats from Northeast China. PLoS One. 2018 Oct 9;13(10):e0205441. https://doi.org/10.1371/journal.pone.0205441YiSNiuJWangHDongGGuoYDongHWangKHuG. Molecular characterization of feline astrovirus in domestic cats from Northeast China. PLoS One.2018Oct 9;13(10):e0205441. https://doi.org/10.1371/journal.pone.020544110.1371/journal.pone.0205441617717730300387Search in Google Scholar

Zhang W, Li L, Deng X, Blümel J, Nübling CM, Hunfeld A, Baylis SA, Delwart E. Viral nucleic acids in human plasma pools. Transfusion. 2016 Sep;56(9):2248–2255. https://doi.org/10.1111/trf.13692ZhangWLiLDengXBlümelJNüblingCMHunfeldABaylisSADelwartE. Viral nucleic acids in human plasma pools. Transfusion.2016Sep;56(9):2248–2255. https://doi.org/10.1111/trf.1369210.1111/trf.1369227306718Search in Google Scholar

Zhao C, Chen C, Li Y, Dong S, Tan K, Tian Y, Zhang L, Huang J, Zhang L. Genomic characterization of a novel recombinant porcine astrovirus isolated in northeastern China. Arch Virol. 2019 May; 164(5):1469–1473. https://doi.org/10.1007/s00705-019-04162-8ZhaoCChenCLiYDongSTanKTianYZhangLHuangJZhangL. Genomic characterization of a novel recombinant porcine astrovirus isolated in northeastern China. Arch Virol.2019May; 164(5):1469–1473. https://doi.org/10.1007/s00705-019-04162-810.1007/s00705-019-04162-830868264Search in Google Scholar