Accès libre

Identification of three large full-sib families of Quercus rubra for genetic mapping in an isolated planting outside the species’ range in Germany

À propos de cet article

Citez

Aldrich PR, Michler CH, Sun W, Romero-Severson J (2002) Microsatellite markers for northern red oak (Fagaceae: Quercus rubra). Molecular Ecology Notes 2(4):472-474. https://doi.org/10.1046/j.1471-8286.2002.00282.x Search in Google Scholar

Beavis W (1994) The power and deceit of QTL experiments: lessons from comparative QTL studies. Proceedings of the forty-ninth annual corn and sorghum industry research conference 250:266. Search in Google Scholar

Bodénès C, Chancerel E, Ehrenmann F, Kremer A, Plomion C (2016). High-density linkage mapping and distribution of segregation distortion regions in the oak genome. DNA Research 23(2):115-124. https://doi.org/10.1093/dnares/dsw001 Search in Google Scholar

Buckler ES IV, Phelps-Durr TL, Buckler CSK, Dawe RK, Doebley JF, Holtsford TP (1999) Meiotic drive of chromosomal knobs reshaped the maize genome. Genetics 153(1):415-426. https://doi.org/10.1093/genetics/153.1.415 Search in Google Scholar

Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J (2016) Fragman: an R package for fragment analysis. BMC Genetics 17:1-8. https://doi.org/10.1186/s12863-016-0365-6 Search in Google Scholar

Deguilloux MF, Dumolin-Lapègue S, Gielly L, Grivet D, Petit RJ (2003) A set of primers for the amplification of chloroplast microsatellites in Quercus. Mol Ecol Notes 3:24–27. https://doi.org/10.1046/j.1471-8286.2003.00339.x Search in Google Scholar

Díaz M, Møller AP, Pulido FJ (2003) Fruit abortion, developmental selection and developmental stability in Quercus ilex. Oecologia 135:378–385. https://doi.org/10.1007/s00442-003-1202-y Search in Google Scholar

Dominguez-Flores T, Budde KB, Carlson JE, Gailing O (accepted) Distance dependent mating but considerable pollen immigration in an isolated Quercus rubra planting in Germany. European Journal of Forest Research. https://doi.org/10.1007/s10342-024-01704-x Search in Google Scholar

Durand J, Bodénès C, Chancerel E, Frigerio JM, Vendramin G, Sebastiani F, Buonamici A, Gailing O, Koelewijn HP, Villani F, Mattioni C, Cherubini M, Goicoechea PG, Herrán A, Ikaran A, Cabané C, Ueno S, Alberto F, Dumoulin PY, Guichoux E, de Daruvar A, Kremer A, Plomion C (2010) A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study. BMC Genomics 11:1-13. https://doi.org/10.1186/1471-2164-11-570 Search in Google Scholar

El-Kassaby YA, Lstibůrek M (2009) Breeding without breeding. Genetics Research 91(2):111-120. https://doi.org/10.1017/S001667230900007X Search in Google Scholar

Gailing O, Staton ME, Lane T, Schlarbaum SE, Nipper R, Owusu SA, Carlson JE (2017) Construction of a framework genetic linkage map in Gleditsia triacanthos L. Plant Molecular Biology Reporter 153(1):415-426. https://doi.org/10.1007/s11105-016-1012-0 Search in Google Scholar

Gauthier S, Bernier P, Kuuluvainen T, Shvidenko AZ, Schepaschenko DG (2015) Boreal forest health and global change. Science 349(6250):819-822. https://doi.org/10.1126/science.aaa9092 Search in Google Scholar

Götz J, Gailing O (2022) A novel set of polymorphic chloroplast microsatellite markers for northern red oak (Q. rubra L.). Plant Genet Resour Charact Util 20: 174–177. https://doi.org/10.1017/S1479262122000156 Search in Google Scholar

Gręda A, Woziwoda B, Dyderski MK, Jagodziński AM, Frelich LE (2022) Acorn production of introduced Quercus rubra is more strongly impacted by the weather than by the forest site (a case study from Poland). Agricultural and Forest Meteorology 327:109228. https://doi.org/10.1016/j.agrformet.2022.109228 Search in Google Scholar

Jones OR, Wang J (2010) COLONY: a program for parentage and sibship inference from multilocus genotype data. Molecular Ecology Resources 10(3):551-555. https://doi.org/10.1111/j.1755-0998.2009.02787.x Search in Google Scholar

Konar A, Choudhury O, Bullis R, Fiedler L, Kruser JM, Stephens MT, Gailing O, Schlarbaum S, Coggeshall MV, Staton ME, Carlson JE, Emrich S, Romero-Severson J (2017) High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra. BMC Genomics 18:1-12. https://doi.org/10.1186/s12864-017-3765-8 Search in Google Scholar

Krautwurst M, Past F, Kersten B, Bubner B, Mueller NA (2023) Identification of full-sibling families from natural single-tree ash progenies based on SSR markers and genome-wide SNPs. bioRxiv 2023–07. https://doi.org/10.1101/2023.07.18.549475 Search in Google Scholar

Kuang H, Richardson T, Carson S, Wilcox P, Bongarten B (1999) Genetic analysis of inbreeding depression in plus tree 850.55 of Pinus radiata D. Don. I. Genetic map with distorted markers. Theoretical and Applied Genetics 98:697-703. https://doi.org/10.1007/s001220051123 Search in Google Scholar

Margarido GRA, Souza AP, Garcia AA (2007) OneMap: software for genetic mapping in outcrossing species. Hereditas 144(3):78-79. https://doi.org/10.1111/j.2007.0018-0661.02000.x Search in Google Scholar

Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7(5):639-655. https://doi.org/10.1046/j.1365-294x.1998.00374.x Search in Google Scholar

Møller AP (1997) Developmental selection against developmentally unstable offspring and sexual selection. Journal of Theoretical Biology 185(4):415-422. https://doi.org/10.1006/jtbi.1996.0332 Search in Google Scholar

Owusu SA, Schlarbaum SE, Carlson JE, Gailing O (2016) Pollen gene flow and molecular identification of full-sib families in small and isolated population fragments of Gleditsia triacanthos L. Botany 94(7):523-532. https://doi.org/10.1139/cjb-2015-0244 Search in Google Scholar

R Core Team (2021) R: A language and environment for statistical computing. R Foundation for Statistical Computing. https://www.R-project.org/ Search in Google Scholar

Sork VL, Bramble JE (1993) Prediction of acorn crops in three species of North American oaks: Quercus alba, Q. rubra and Q. velutina. Annales des Sciences Forestières 50:128s–136s. https://doi.org/10.1051/forest:19930712 Search in Google Scholar

Sullivan AR, Lind JF, McCleary TS, Romero-Severson J, Gailing O (2013) Development and characterization of genomic and gene-based microsatellite markers in North American red oak species. Plant Molecular Biology Reporter 31:231–239. https://doi.org/10.1007/s11105-012-0495-6 Search in Google Scholar

eISSN:
2509-8934
Langue:
Anglais
Périodicité:
Volume Open
Sujets de la revue:
Life Sciences, Molecular Biology, Genetics, Biotechnology, Plant Science