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An efficient repeat masking library for the genomic data of coconut and related trees

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Al-Dous EK, George B, Al-Mahmoud ME et al (2011) De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nature Biotechnology 29(6):521-7. https://doi.org/10.1038/nbt.1860 Search in Google Scholar

Bansal J, Gupta K, Rajkumar MS, Garg R, Jain M (2020) Draft genome and transcriptome analyses of halophyte rice Oryza coarctata provide resources for salinity and submergence stress response factors. Physiologiae Plantarum 173(4):1309-1322. https://doi.org/10.1111/ppl.13284 Search in Google Scholar

Bao Z, Eddy SR (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Research 12(8):1269-76. https://doi.org/10.1101/gr.88502 Search in Google Scholar

FAO (2023) FAOSTAT, Food and Agriculture Organization of the United Nations, Rome, Italy, available at https://www.fao.org/faostat/en/#data/QCL Search in Google Scholar

Kazazian HH (2004) Mobile elements: drivers of genome evolution. Science 303(5664):1626-32. https://doi.org/10.1126/science.1089670 Search in Google Scholar

Lantican DV, Strickler SR, Canama AO et al (2019) De novo genome sequence assembly of dwarf coconut (Cocos nucifera L.‘Catigan Green Dwarf’) provides insights into genomic variation between coconut types and related palm species. G3: Genes Genomes Genetics 9(8):2377-93. https://doi.org/10.1534/g3.119.400215 Search in Google Scholar

Mondal TK, Rawal HC, Chowrasia S et al (2018) Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes. Scientific Reports 8:13698. https://doi.org/10.1038/s41598-018-31518-y Search in Google Scholar

Muliyar RK, Chowdappa P, Behera SK et al (2020) Assembly and annotation of the nuclear and organellar genomes of a dwarf coconut (Chowghat Green Dwarf) possessing enhanced disease resistance. Omics 24(12):726-42. https://doi.org/10.1089/omi.2020.0147 Search in Google Scholar

Price AL, Jones NC, Pevzner PA (2005) De novo identification of repeat families in large genomes. Bioinformatics 21(Suppl-1):i351-i358. https://doi.org/10.1093/bioinformatics/bti1018 Search in Google Scholar

Sairam CV, Jayasekhar S (2018) World coconut economy: Sectoral issues, markets and trade. In: Nampoothiri KUK, Krishnakumar V, Thampan P, Nair MA (Eds) The Coconut Palm (Cocos nucifera L.) - Research and Development Perspectives, eBook ISBN 978-981-13-2754-4, Springer, Singapore, pp. 801-820. https://doi.org/10.1007/978-981-13-2754-4_17 Search in Google Scholar

Shi C, Li W, Zhang QJ et al (2020) The draft genome sequence of an upland wild rice species, Oryza granulata. Scientific Data 7:131. https://doi.org/10.1038/s41597-020-0470-2 Search in Google Scholar

Singh R, Ong-Abdullah M, Low ET et al (2013) Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature 500(7462):335-9. https://doi.org/10.1038/nature12309 Search in Google Scholar

Stanke M, Waack S (2003) Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19(Suppl-2):ii215-ii225. https://doi.org/10.1093/bioinformatics/btg1080 Search in Google Scholar

Xiao Y, Xu P, Fan H et al (2017) The genome draft of coconut (Cocos nucifera). Gigascience 6(11):gix095. https://doi.org/10.1093/gigascience/gix095 Search in Google Scholar

eISSN:
2509-8934
Langue:
Anglais
Périodicité:
Volume Open
Sujets de la revue:
Life Sciences, Molecular Biology, Genetics, Biotechnology, Plant Science