Accès libre

Phylogenetic characteristics of selected European huchen (Hucho hucho L.) broodstocks – implication for broodstock management

À propos de cet article

Citez

Araki, H., Waples, R.S., Ardren, W.R. & Cooper, B. (2007). Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms. Mol. Ecol. 16(5): 953–966. DOI: 10.1111/j.1365-294X.2006.03206.x. ArakiH. WaplesR.S. ArdrenW.R. CooperB. 2007 Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms Mol. Ecol 16 5 953 966 10.1111/j.1365-294X.2006.03206.x 17305853 Open DOISearch in Google Scholar

Bernas, R., Burzynski, A., Debowski, P., Pocwierz-Kotus, A. & Wenne, R. (2014). Genetic diversity within sea trout population from an intensively stocked southern Baltic river, based on microsatellite DNA analysis. Fisheries Manag. Ecol. 21: 398–409. DOI: 10.1111/fme.12090. BernasR. BurzynskiA. DebowskiP. Pocwierz-KotusA. WenneR. 2014 Genetic diversity within sea trout population from an intensively stocked southern Baltic river, based on microsatellite DNA analysis Fisheries Manag. Ecol. 21 398 409 10.1111/fme.12090 Open DOISearch in Google Scholar

Bowcock, A.M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J.R. et al. (1994). High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368(6470): 455–457. DOI: 10.1038/368455a0. BowcockA.M. Ruiz-LinaresA. TomfohrdeJ. MinchE. KiddJ.R. 1994 High resolution of human evolutionary trees with polymorphic microsatellites Nature 368 6470 455 457 10.1038/368455a0 7510853 Open DOISearch in Google Scholar

Ditlecadet, D., Dufresne, F., Le Francois, N.R. & Blier, P.U. (2006). Applying microsatellites in two commercial strains of Arctic charr (Salvelinus alpinus): Potential for selective breeding program. Aquaculture 257(1): 37–43. DOI: 10.1016/j.aquaculture.2006.03.016. DitlecadetD. DufresneF. Le FrancoisN.R. BlierP.U. 2006 Applying microsatellites in two commercial strains of Arctic charr (Salvelinus alpinus): Potential for selective breeding program Aquaculture 257 1 37 43 10.1016/j.aquaculture.2006.03.016 Open DOISearch in Google Scholar

Do, C., Waples, R.S., Peel, D., Macbeth, G.M., Tillet, B.J. et al. (2013). NeEstimator V2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Mol. Ecol. Res. 14(1): 209–214. DOI: 10.1111/1755-0998.12157. DoC. WaplesR.S. PeelD. MacbethG.M. TilletB.J. 2013 NeEstimator V2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data Mol. Ecol. Res. 14 1 209 214 10.1111/1755-0998.12157 23992227 Open DOISearch in Google Scholar

Drywa, A., Pocwierz-Kotus, A., Was, A., Dobosz, S., Kent, M.P. et al. (2013). Genetyping of two populations of Southern Baltic Sea trout Salmo trutta m. trutta using an Atlantic salmon derived SNP-array. Mar. Genomics. 9: 25–32. DOI: 10.1016/j.margen.2012.08.001. DrywaA. Pocwierz-KotusA. WasA. DoboszS. KentM.P. 2013 Genetyping of two populations of Southern Baltic Sea trout Salmo trutta m. trutta using an Atlantic salmon derived SNP-array Mar. Genomics. 9 25 32 10.1016/j.margen.2012.08.001 23137524 Open DOISearch in Google Scholar

Einum, S. & Fleming, I.A. (2001). Implication of stocking: ecological interaction between wild related salmonids. Nor. J. Fresh. Res. 75: 56–70. EinumS. FlemingI.A. 2001 Implication of stocking: ecological interaction between wild related salmonids Nor. J. Fresh. Res. 75 56 70 Search in Google Scholar

Evanno, G., Regnaut, S. & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611–2620. DOI: 10.1111/j.1365-294X.2005.02553.x. EvannoG. RegnautS. GoudetJ. 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study Mol. Ecol. 14 2611 2620 10.1111/j.1365-294X.2005.02553.x 15969739 Open DOISearch in Google Scholar

Falush, D., Stephens, M. & Pritchard, J.K. (2003). Inference of population structure using multilocus genotypic data: linked loci and correlated allele frequencies. Genetics 164: 1567–1587. FalushD. StephensM. PritchardJ.K. 2003 Inference of population structure using multilocus genotypic data: linked loci and correlated allele frequencies Genetics 164 1567 1587 10.1093/genetics/164.4.1567146264812930761 Search in Google Scholar

FishBase 2015. Retrieved May 15, 2020 from http://www.fishbase.org. FishBase 2015 Retrieved May 15, 2020 from http://www.fishbase.org. Search in Google Scholar

Fopp-Bayat, D., Jankun, M., Kuźmiński, H. (2010). Genetic characterization of Polish cultured brook trout, Salvelinus fontinalis (Mitchill), based on microsatellite DNA analysis. Arch. Pol. Fisheries. 18: 93–99. DOI: 10.2478/v10086-010-0011-2. Fopp-BayatD. JankunM. KuźmińskiH. 2010 Genetic characterization of Polish cultured brook trout, Salvelinus fontinalis (Mitchill), based on microsatellite DNA analysis Arch. Pol. Fisheries. 18 93 99 10.2478/v10086-010-0011-2 Open DOISearch in Google Scholar

Frankham, R., Ballou, J.D., David, A. & Briscoe D.A. (2010). Introduction to Conservation Genetics, 2nd ed. Cambridge University Press, Cambridge. FrankhamR. BallouJ.D. DavidA. BriscoeD.A. 2010 Introduction to Conservation Genetics 2nd ed. Cambridge University Press Cambridge 10.1017/CBO9780511809002 Search in Google Scholar

Geist, J., Kolasha, M., Gum, B. & Kuehn, R. (2009). The importance of genetic cluster recognition for the conservation of migratory fish species: the example of the endangered European huchen Hucho hucho (L.). J. Fish. Biol. 75: 1063–1078. DOI: 10.1111/j.1095-8649.2009.02377.x. GeistJ. KolashaM. GumB. KuehnR. 2009 The importance of genetic cluster recognition for the conservation of migratory fish species: the example of the endangered European huchen Hucho hucho (L.) J. Fish. Biol 75 1063 1078 10.1111/j.1095-8649.2009.02377.x 20738598 Open DOISearch in Google Scholar

Geist, J. (2011). Integrative freshwater ecology and biodiversity conservation. Ecol. Indic. 11: 1507–1516. DOI: 10.1016/j.ecolind.2011.04.002. GeistJ. 2011 Integrative freshwater ecology and biodiversity conservation Ecol. Indic 11 1507 1516 10.1016/j.ecolind.2011.04.002 Open DOISearch in Google Scholar

Glover, K.A., Taggart, J.B., Skaala, O. & Teale, A.J. (2004). A study of inadvertent domestication selection during start-feeding of brown trout families. J. Fish. Biol. 64: 1168–1178. DOI: 10.1111/j.0022-1112.2004.00376.x. GloverK.A. TaggartJ.B. SkaalaO. TealeA.J. 2004 A study of inadvertent domestication selection during start-feeding of brown trout families J. Fish. Biol. 64 1168 1178 10.1111/j.0022-1112.2004.00376.x Open DOISearch in Google Scholar

Hansen, M.M. (2002). Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples. Mol. Ecol. 11: 1003–1015. DOI: 10.1046/j.1365-294X.2002.01495.x. HansenM.M. 2002 Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples Mol. Ecol. 11 1003 1015 10.1046/j.1365-294X.2002.01495.x 12030979 Open DOISearch in Google Scholar

Hoarou, G., Boon, E., Jongma, D.N., Ferber, S., Palsson, J., van der Veer, H.W. et al. (2005). Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.). P. Roy. Soc. B-Biol. Sci. 272: 497–503. DOI: 10.1098/rspb.2004.2963. HoarouG. BoonE. JongmaD.N. FerberS. PalssonJ. van der VeerH.W. 2005 Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.) P. Roy. Soc. B-Biol. Sci. 272 497 503 10.1098/rspb.2004.2963 157870515799945 Open DOISearch in Google Scholar

Huff, D.D., Miller, L.M., Chizinski, C.J. & Vondracek, B. (2011). Mixed-source reintroductions lead to outbreeding depression in second generation descendants of a native North American fish. Mol. Ecol. 20(20): 4246–4258. DOI: 10.1111/j.1365-294X.2011.05271.x. HuffD.D. MillerL.M. ChizinskiC.J. VondracekB. 2011 Mixed-source reintroductions lead to outbreeding depression in second generation descendants of a native North American fish Mol. Ecol. 20 20 4246 4258 10.1111/j.1365-294X.2011.05271.x 21917046 Open DOISearch in Google Scholar

IUCN. (2015). Red list of Threatened Species. Retrieved June 15, 2015 from http://www.iucnredlist.org. IUCN 2015 Red list of Threatened Species Retrieved June 15, 2015 from http://www.iucnredlist.org. Search in Google Scholar

Kaczmarczyk, D., Luczyński, M. & Brzuzan, P. (2012). Genetic variation in three paddlefish (Polyodon spathula Walbaum) stocks based on microsatellite DNA analysis. Czech J. Anim. Sci. 57(8): 345–352. KaczmarczykD. LuczyńskiM. BrzuzanP. 2012 Genetic variation in three paddlefish (Polyodon spathula Walbaum) stocks based on microsatellite DNA analysis Czech J. Anim. Sci. 57 8 345 352 10.17221/6269-CJAS Search in Google Scholar

Kalinowski, S.T., Manlove, K.R. & Taper, M.L. (2007). ONCOR: A Computer Program for Genetic Stock Identification. Bozeman, MT: Department of Ecology. Montana State University. Retrived June, 15, 2015 from http://www.montana.edu/kalinowski/Software/ONCOR.htm. KalinowskiS.T. ManloveK.R. TaperM.L. 2007 ONCOR: A Computer Program for Genetic Stock Identification. Bozeman, MT: Department of Ecology Montana State University Retrived June, 15, 2015 from http://www.montana.edu/kalinowski/Software/ONCOR.htm. Search in Google Scholar

Kottelat, M. & Freyhof, J. (2007). Handbook of European freshwater fishes. Switzerland: Steven Simpson Books. KottelatM. FreyhofJ. 2007 Handbook of European freshwater fishes Switzerland Steven Simpson Books Search in Google Scholar

Kucinski, M., Fopp-Bayat, D., Liszewski, T., Svinger, V. Lebeda, I. et al. (2015a). Genetic analysis of four European huchen (Hucho hucho Linnaeus, 1758) broodstocks from Poland, Germany, Slovakia and Ukraine: implication for conservation. J. App. Genet. 56(4): 469–480. DOI: 10.1007/s13353-015-0274-9. KucinskiM. Fopp-BayatD. LiszewskiT. SvingerV. LebedaI. 2015a Genetic analysis of four European huchen (Hucho hucho Linnaeus, 1758) broodstocks from Poland, Germany, Slovakia and Ukraine: implication for conservation J. App. Genet. 56 4 469 480 10.1007/s13353-015-0274-9 461785725743021 Open DOISearch in Google Scholar

Kucinski, M., Fopp-Bayat, D., Zivna, D., Liszewski, T., Svinger, V. et al. (2015b). Application of mtDNA markers for European huchen (Hucho hucho Linnaeus, 1758) management in Poland. Czech J.. Anim. Sci. 60: 564–569. DOI: 10.17221/8599-CJAS. KucinskiM. Fopp-BayatD. ZivnaD. LiszewskiT. SvingerV. 2015b Application of mtDNA markers for European huchen (Hucho hucho Linnaeus, 1758) management in Poland Czech J.. Anim. Sci 60 564 569 10.17221/8599-CJAS Open DOISearch in Google Scholar

Langella, O. (2002). Populations 1.2.28. Logiciel de génétique des populations. Laboratoire Populations, génétique et évolution, CNRS UPR 9034, Gif-sur-Yvette. Retrived May 15, 2020 from http://bioinformatics.org/~tryphon/populations/#ancre_bibliographie. LangellaO. 2002 Populations 1.2.28. Logiciel de génétique des populations. Laboratoire Populations, génétique et évolution, CNRS UPR 9034, Gif-sur-Yvette Retrived May 15, 2020 from http://bioinformatics.org/~tryphon/populations/#ancre_bibliographie. Search in Google Scholar

Maric, S., Razpet, A., Nikolic, V. & Simonovic, P. (2011). Genetic differentiation of European grayling (Thymallus thymallus) populations in Serbia, based on mitochondrial and nuclear DNA analyses. Genet. Sel. Evol. 42: 2. DOI: 10.1186/1297-9686-43-2. MaricS. RazpetA. NikolicV. SimonovicP. 2011 Genetic differentiation of European grayling (Thymallus thymallus) populations in Serbia, based on mitochondrial and nuclear DNA analyses Genet. Sel. Evol. 42 2 10.1186/1297-9686-43-2 303660121235756 Open DOISearch in Google Scholar

Nei, M., Tajima, F. & Tateno, Y. (1983). Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19: 153–170. DOI: 10.1007/BF02300753. NeiM. TajimaF. TatenoY. 1983 Accuracy of estimated phylogenetic trees from molecular data J. Mol. Evol 19 153 170 10.1007/BF02300753 6571220 Open DOISearch in Google Scholar

Peakall, R. & Smouse, P.E. (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28: 2537–2539. DOI: 10.1093/bioinformatics/bts460. PeakallR. SmouseP.E. 2012 GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update Bioinformatics 28 2537 2539 10.1093/bioinformatics/bts460 346324522820204 Open DOISearch in Google Scholar

Piry, S., Alapetite, A., Cornuet, J.-M., Paetkau, D., Baudouin, L. & Estoup, A. (2004). GeneClass2: A Software for Genetic Assignment and First-Generation Migrant Detection. J. Hered. 95: 536–539. DOI: 10.1093/jhered/esh074. PiryS. AlapetiteA. CornuetJ.-M. PaetkauD. BaudouinL. EstoupA. 2004 GeneClass2: A Software for Genetic Assignment and First-Generation Migrant Detection J. Hered 95 536 539 10.1093/jhered/esh074 15475402 Open DOISearch in Google Scholar

Pocwierz-Kotus, A., Bernas, R., Kent, M.P., Lien, S., Leliuna, E. et al. (2015). Restitution and genetic differentiation of salmon populations in the southern Baltic genetyped with the Atlantic salmon 7K SNP array. Genet. Sel. Evol. 47: 39. DOI: 10.1186/s12711-015-0121-9. Pocwierz-KotusA. BernasR. KentM.P. LienS. LeliunaE. 2015 Restitution and genetic differentiation of salmon populations in the southern Baltic genetyped with the Atlantic salmon 7K SNP array Genet. Sel. Evol 47 39 10.1186/s12711-015-0121-9 442191125943196 Open DOISearch in Google Scholar

Pritchard, J.K., Stephens, M. & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945–959. PritchardJ.K. StephensM. DonnellyP. 2000 Inference of population structure using multilocus genotype data Genetics 155 945 959 10.1093/genetics/155.2.945146109610835412 Search in Google Scholar

Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457–462. SlatkinM. 1995 A measure of population subdivision based on microsatellite allele frequencies Genetics 139 457 462 10.1093/genetics/139.1.45712063437705646 Search in Google Scholar

Sonstebo, J.H. Borgstrom, R. & Heun, M. (2007). Genetic structure of brown trout (Salmo trutta L.) from the Hardangervidda mountain plateau (Norway) analyzed by microsatellite DNA: a basis for conservation guideline. Conserv. Genet. 8: 33–44. DOI: 10.1007/s10592-006-9145-6. SonsteboJ.H. BorgstromR. HeunM. 2007 Genetic structure of brown trout (Salmo trutta L.) from the Hardangervidda mountain plateau (Norway) analyzed by microsatellite DNA: a basis for conservation guideline Conserv. Genet. 8 33 44 10.1007/s10592-006-9145-6 Open DOISearch in Google Scholar

Tringali, M.D. & Bert, T.M. (1998). Risk to genetic effective population size should be an important consideration in fish stock-enhancement programs. Bull. Mar. Sci. 62(2): 641–659. TringaliM.D. BertT.M. 1998 Risk to genetic effective population size should be an important consideration in fish stock-enhancement programs Bull. Mar. Sci. 62 2 641 659 Search in Google Scholar

Vaha, J.P., Erkinaro, J., Niemela, E. & Primmer, C.R. (2007). Life-history and habitat features influence the within-river genetic structure of Atlantic salmon. Mol. Ecol. 16: 2638–2658. DOI: 10.1111/j.1365-294X.2007.03329.x. VahaJ.P. ErkinaroJ. NiemelaE. PrimmerC.R. 2007 Life-history and habitat features influence the within-river genetic structure of Atlantic salmon Mol. Ecol. 16 2638 2658 10.1111/j.1365-294X.2007.03329.x 17594436 Open DOISearch in Google Scholar

Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004). Micro-Checker: software for identifying and correcting genotypes errors in microsatellite data. Mol. Ecol. Notes. 4(3): 535–538. DOI: 10.1111/j.1471-8286.2004.00684.x. Van OosterhoutC. HutchinsonW.F. WillsD.P.M. ShipleyP. 2004 Micro-Checker: software for identifying and correcting genotypes errors in microsatellite data Mol. Ecol. Notes 4 3 535 538 10.1111/j.1471-8286.2004.00684.x Open DOISearch in Google Scholar

Vrijenhoek, R.C. (1998). Conservation genetics of freshwater fish. J. Fish. Biol. 53: 394–412. DOI: 10.1111/j.1095-8649.1998.tb01039.x. VrijenhoekR.C. 1998 Conservation genetics of freshwater fish J. Fish. Biol. 53 394 412 10.1111/j.1095-8649.1998.tb01039.x Open DOISearch in Google Scholar

Walsh, P.S., Metzger, D.A. & Higuchi, R. (1991). Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506–513. WalshP.S. MetzgerD.A. HiguchiR. 1991 Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material Biotechniques 10 506 513 10.2144/000114018 Search in Google Scholar

Wang, S., Hard, J.J. & Utter, F. (2002). Salmonid inbreeding: a review. Rev. Fish. Biol. Fisher. 11: 301–319. DOI: 10.1023/A:1021330500365. WangS. HardJ.J. UtterF. 2002 Salmonid inbreeding: a review Rev. Fish. Biol. Fisher. 11 301 319 10.1023/A:1021330500365 Open DOISearch in Google Scholar

Waples, R.S. (1999). Dispelling some myths about hatcheries. Fisheries 24: 12–21. DOI: 10.1577/1548-8446(1999)024<0012:DSMAH>2.0.CO;2. WaplesR.S. 1999 Dispelling some myths about hatcheries Fisheries 24 12 21 10.1577/1548-8446(1999)024<0012:DSMAH>2.0.CO;2 Open DOISearch in Google Scholar

Wedekind, C., Rudolfsen, G., Jacob, A., Urbach, D. & Muller, R. (2007). The genetic consequences of hatchery-induced competition in a salmonid. Biol. Conserv. 137: 180–188. DOI: 10.1016/j.biocon.2007.01.025. WedekindC. RudolfsenG. JacobA. UrbachD. MullerR. 2007 The genetic consequences of hatchery-induced competition in a salmonid Biol. Conserv. 137 180 188 10.1016/j.biocon.2007.01.025 Open DOISearch in Google Scholar

Weir, B.S. & Cockerman, C.C. (1984). Estimating F statistics for the analysis of population structure. Evolution 38: 1358–1370. DOI: 10.2307/2408641. WeirB.S. CockermanC.C. 1984 Estimating F statistics for the analysis of population structure Evolution 38 1358 1370 10.2307/2408641 Open DOISearch in Google Scholar

Wenburg, J.K., Bentzen, P. & Foote, C.J. (1998). Microsatellite analysis of genetic population structure in an endangered salmonid: the coastal cutthroat trout (Oncorhynchus clarki). Mol. Ecol. 7: 733–749. DOI: 10.1046/j.1365-294x.1998.00386.x. WenburgJ.K. BentzenP. FooteC.J. 1998 Microsatellite analysis of genetic population structure in an endangered salmonid: the coastal cutthroat trout (Oncorhynchus clarki) Mol. Ecol. 7 733 749 10.1046/j.1365-294x.1998.00386.x Open DOISearch in Google Scholar

Yang, X., Qian, L., Wu, H., Fan, Z. & Wang, C. (2012). Population differentiation, bottleneck and selection of Eurasian perch (Perca fluviatilis L.) at the Asian edge of its natural range. Biochem. Syst. Ecol. 40: 6–12. DOI: 10.1016/j.bse.2011.09.002. YangX. QianL. WuH. FanZ. WangC. 2012 Population differentiation, bottleneck and selection of Eurasian perch (Perca fluviatilis L.) at the Asian edge of its natural range Biochem. Syst. Ecol. 40 6 12 10.1016/j.bse.2011.09.002 Open DOISearch in Google Scholar

eISSN:
1897-3191
Langue:
Anglais
Périodicité:
4 fois par an
Sujets de la revue:
Chemistry, other, Geosciences, Life Sciences