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Detection and molecular analysis of bovine enteric norovirus and nebovirus in Turkey

Turhan Turan

Turhan Turan

Department of Virology, Faculty of Veterinary Medicine, Cumhuriyet UniversitySivas, Turkey
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Turan, Turhan
, 
Hakan Işıdan

Hakan Işıdan

Department of Virology, Faculty of Veterinary Medicine, Cumhuriyet UniversitySivas, Turkey
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Işıdan, Hakan
, 
Mustafa Ozan Atasoy

Mustafa Ozan Atasoy

Department of Virology, Faculty of Veterinary Medicine, Cumhuriyet UniversitySivas, Turkey
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Atasoy, Mustafa Ozan
 et 
Bünyamin Irehan

Bünyamin Irehan

Veterinary Control InstituteElazığ, Turkey
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Irehan, Bünyamin
  
07 juil. 2018
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Publié en ligne: 07 juil. 2018
Pages: 129 - 135
Reçu: 08 mars 2018
Accepté: 20 juin 2018
DOI: https://doi.org/10.2478/jvetres-2018-0021
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© 2018 Turhan Turan et al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Fig. 1

Sampling area
Sampling area

Fig. 2

cladogram representing the phylogenic tree of bovine neboviruses based on 274 bp sequences. Each coloured branch indicates a different genotypes. Tree construction was built with use of Unipro UGENE v.1.21 software (14)
cladogram representing the phylogenic tree of bovine neboviruses based on 274 bp sequences. Each coloured branch indicates a different genotypes. Tree construction was built with use of Unipro UGENE v.1.21 software (14)

Fig. 3

Norovirus phylogenic tree constructed on 422 bp sequences. Alignment and classification of all genome data were performed by the UPGMA method with Unipro UGENE v. 1.21 software (14). Strains were coloured according to their genogroups. Novel norovirus sequences are shown as ruby red colour
Norovirus phylogenic tree constructed on 422 bp sequences. Alignment and classification of all genome data were performed by the UPGMA method with Unipro UGENE v. 1.21 software (14). Strains were coloured according to their genogroups. Novel norovirus sequences are shown as ruby red colour

Oligonucleotide data used in the study

VirusNameSequenceAmplicon size (bp)LocationReference
Nebo2FTYTAYGACGGGCGCTWTTATGG
NebovirusNebo1RAGACAGTGCCGAAAAGGGTGTA2824984–5265aThis study
BoNoV851-FATGTGGTVCAGGCNAACAGCTA
BoNoV1350-RACTACCTTCCCACARHGACARA5004538–5037bThis study
NorovirusIIIBovNo-FCGCTCCATGTTYGCBTGG
IIIBovNo-RATCAGCACATGRGGRAACTG5164972–5487c(13)

GenBank accession numbers of noro- and nebovirus strains used in genetic analysis

GenusStrainAccession numberGenotype
Mu/NoV/GV/MNV1/2002/USAAY228235.2GV
NLV/SaintCloud/624/1998/USAF414427.1GIV. 1
NLV/Brattleboro/321/1995/USAF414415.1GII.3
Toronto/ CANU02030GII.3
SOV/ UKL07418GI.2
NV/USAM87661GI.1
Bo/Thirsk10/00/UKAY126468.2GIII. 1
Bo/Jena/DEAJ011099GIII. 1
Bo/ DuzceN2/2010/TURKF218823.1GIII.2
Bo/SivasN6/2011/TURKF218824.1GIII.2
bovine/ DijonA077/06/FRGU259577.1GIII.2
bovine/ DijonA436/08/FRGU259579.1GIII.2
Bo/Newbury2/1976/UKAF097917.5GIII.2
Bo/NoV/JN-MA156/04/KoreaDQ912792.1GIII.2
Bo/ Dumfries/94/UKAY126474.2GIII.2
Bo/AdiyamanN6/2011/TURKF218825.1GIII.2
Bo/BalikesirN9/2009/TURKF218822.1GIII.2
bovine/GIII.2/471_0790/2005/NORFM242193.1GIII.2
bovine/GIII.2/718_0785/2006/NORFM242191.1GIII.2
bovine/GIII.2/312_0529/2006/NORFM242186.1GIII.2
bovine/GIII.2/240_0243/2005/NORFM242189.1GIII.2
Bo/Nov-33/USA/2010JN585051.1GIII.2
BoNoV/ Bolat7/2016/TRMG022084GIII.2
BoNoV/Bolat85/2016/TRMG022085GIII.2
Bo/Nov-45/USA/2010JN585060.1GIII.2
Bo/Nov-6/USA/2010JN585033.1GIII.2
NorovirusBo/Nov-16/USA/2010JN585041.1GIII.2
Bo/Nov-10/USA/2010JN585036.1GIII.2
Bo/Nov-2/USA/2010JN585029.1GIII.2
Bo/Nov-1/USA/2010JN585028.1GIII.2
Bo/Nov-13/USA/2010JN585038.1GIII.2
Bo/NoV/JN-MA140/04/KoreaDQ912791.1GIII.2
Bo/NoV/JN-MA302/04/KoreaDQ912797.1GIII.2
Bo/NoV/JN-MA271/04/KoreaDQ912795.1GIII.2
Bo/NoV/JN-SA296/04/KoreaDQ912796.1GIII.2
bovine/ DijonA407/08/FRGU259575.1GIII.2
Bo/MonastirB139/2009/TUNJN418489.1GIII.2
bovine/Belgium/B52/2002/BeAY686489.2GIII.2
bovine/XJSHZ148/2011/CNJQ905268.1GIII.2
BEC200/ITHM745911.1GIII.2
Bo/Penrith55/00/UKAY126476.1GIII.2
BEC830/ITHM745913.1GIII.2
Bovine/ Wasme/B200/2003/BeAY686494.1GIII.2
Bovine/Wasme/B199/2003/BeAY686493.1GIII.2
CV186-OHAF542084.1GIII.2
CV95-OHAF542083.1GIII.2
Bo/ 21Z90/GIII.2/2012/IranKM650007.1GIII.2
BEC483/ITHM745909.1GIII.2
Bovine/ Mohiville/B 123/2002/BeAY686490.2GIII.2
Bo/4Z90/GIII.2/2012/IranKM650013.1GIII.2
Bo/6P90/GIII.2/2011/IranKM650011.1GIII.2
Bo/ 58B89/GIII.2/2010/IranKM650009.1GIII.2
Bo/27T90/GIII.2/2011/IranKM650012.1GIII.2
Bo/BEC/PenrithC39/2000/UKDQ228162
Bo/M3641/2000/HUNJX018212
bovine/ DijonA290-2/07/FRGU259551
bovine/DijonA386/08/FRGU259561
bovine/ DijonA364/08/FRGU259556
Bo/Nebraska/80/USAY082891
bovine/DijonA058/05/FRGU259542
Bo/BEC/Penrith140/2000/UKDQ228159
Bo/ BEC/Starcross93/2000/UKDQ228165
NebovirusBo/CV548-OH/2002/USAY549172
Bo/ CV531-OH/2002/USAY549171
Bo/ CV526-OH/2002/USAY549170
Bo/ CV504-OH/2002/USAY549168
Bo/ CV562-OH/2002/USAY549173
Bo/BEC/Starcross117/2000/UKDQ228164
Bo/BEC/Penrith142/2000/UKDQ228160
Bo/BEC/Penrith143/2000/UKDQ228161
Bo/ BEC/Penrith 150/2000/UKDQ228157
Bo/Newbury1/76/UKNC_007916
Bo/ DijonA216/06/FRFJ687386
BoNeV/ Sivas100/2016/TRMG022086
BoNeV/ Sivas120/2016/TRMG022087
BoNeV/ Sivas54/2016/TRMG022088
BoNeV/ Sivas60/2016/TRMG022089
BoNeV/ Sivas63/2016/TRMG022090
BoNeV/ Sivas64/2016/TRMG022091
BoNeV/ Sivas75/2016/TRMG022092
Langue:
Anglais
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4 fois par an
Sujets de la revue:
Sciences de la vie, Biologie moléculaire, Microbiologie et virologie, Sciences de la vie, autres, Médecine, Médecine vétérinaire
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