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Differentiation between Botryosphaeria dothidea and Neofusicoccum spp. based on a single nucleotide polymorphism in the ITS region

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Abdollahzadeh, J. and Zolfaghari S. 2014. Efficiency of rep-PCR fingerprinting as a useful technique for molecular typing of plant pathogenic fungal species: Botryosphaeriaceae species as a case study. FEMS Microbiology Letters, 361: 144–157.10.1111/1574-6968.12624 Search in Google Scholar

Batista, E., Lopes, A. and Alves, A. 2021. What do we know about botryosphaeriaceae? An overview of a worldwide cured dataset. Forests, 12.10.3390/f12030313 Search in Google Scholar

Carvalho, J., Yadav, S., Garrido-Maestu, A., Azinheiro, S., Trujillo, I., Barros-Velázquez, J. and Prado, M. 2021. Evaluation of simple sequence repeats (SSR) and single nucleotide polymorphism (SNP)-based methods in olive varieties from the Northwest of Spain and potential for miniaturization. Food Chemistry: Molecular Sciences, 3: 1–10.10.1016/j.fochms.2021.100038 Search in Google Scholar

Chen, S., Li, G., Liu, F. and Michailides, T.J. 2015. Novel species of Botryosphaeriaceae associated with shoot blight of pistachio. Mycologia 107: 780–792.10.3852/14-24225977211 Search in Google Scholar

Chen, S.F., Morgan, D.P. and Michailides, T.J. 2014. Botryosphaeriaceae and Diaporthaceae associated with panicle and shoot blight of pistachio in California, USA. Fungal Diversity, 67: 157–179.10.1007/s13225-014-0285-6 Search in Google Scholar

Flowers, J., Hartman, J. and Vaillancourt, L. 2003. Detection of Latent Sphaeropsis sapinea Infections in Austrian Pine Tissues Using Nested-Polymerase Chain Reaction. Phytopathology, 93: 1471–1477.10.1094/PHYTO.2003.93.12.1471 Search in Google Scholar

Gaudet, M., Fara, A.-G., Beritognolo, I. and Sabatti, M. 2009. Allele-Specific PCR in SNP Genotyping. In: Single Nucleotide Polymorphisms: Methods and Protocols (A.A. Komar, ed.), 415–424.10.1007/978-1-60327-411-1_26 Search in Google Scholar

Kumar, S., Stecher, G., Li, M., Knyaz, C. and Tamura, K. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, 35: 1547–1549.10.1093/molbev/msy096 Search in Google Scholar

Lazzizera, C., Frisullo, S., Alves, A. and Phillips, A.J.L. 2008. Morphology, phylogeny and pathogenicity of Botryosphaeria and Neofusicoccum species associated with drupe rot of olives in southern Italy. Plant Pathology, 57: 948–956.10.1111/j.1365-3059.2008.01842.x Search in Google Scholar

Lopes, A., Phillips, A.J. and Alves, A. 2017. Mating type genes in the genus Neofusicoccum: Mating strategies and usefulness in species delimitation. Fungal Biology, 121: 394–404.10.1016/j.funbio.2016.08.01128317541 Search in Google Scholar

Madeira, F., Park, Y. Mi, Lee, J., Buso N., Gur T., Madhusoodanan, N., Basutkar, P., Tivey, A.R.N., Potter., S.P., Finn., R.D. and Lopez, R. 2019. The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Research, 47: W636–W641.10.1093/nar/gkz268 Search in Google Scholar

Marsberg, A., Kemler, M., Jami, F., Nagel, J.H., Post-ma-Smidt, A., Naidoo, S., Wingfield, M.J., Crous, P.W., Spatafora, J.W., Hesse, C.N., Robbertse, B. and Slippers B. 2017. Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health. Molecular Plant Pathology, 18: 477–488.10.1111/mpp.12495 Search in Google Scholar

National Center for Biotechnology Information (NCBI)[Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Bio-technology Information, 1988. Available at: https://www.ncbi.nlm.nih.gov. Accessed May 11, 2021. Search in Google Scholar

Owczarzy, R., Tataurov, A.V, Wu, Y., Manthey, J.A., McQuisten, K.A., Almabrazi, H.G., Pedersen, K.F., Lin, Y., Garretson, J., McEntaggart, N.O., Sailor, C.A., Dawson, R.B. and Peek, A.S. 2008. IDT SciTools: a suite for analysis and design of nucleic acid oligomers. Nucleic Acids Research, 36: W163-9.10.1093/nar/gkn198 Search in Google Scholar

Pavlic, D., Slippers, B., Coutinho, T.A. and Wingfield, M.J. 2009. Multiple gene genealogies and phenotypic data reveal cryptic species of the Botryosphaeriaceae: A case study on the Neofusicoccum parvum/N. ribis complex. Molecular Phylogenetics and Evolution, 51: 259–268.10.1016/j.ympev.2008.12.01719152837 Search in Google Scholar

Ridgway, H.J., Amponsah, N.T., Brown, D.S., Baskarathevan, J., Jones, E.E. and Jaspers, M.V. 2011. Detection of botryosphaeriaceous species in environmental samples using a multi-species primer pair. Plant Pathology, 60: 1118–1127.10.1111/j.1365-3059.2011.02474.x Search in Google Scholar

Slippers, B., Smit, W.A., Crous, P.W., Coutinho, T.A., Wingfield, B.D. and Wingfield, M.J. 2007. Taxonomy, phylogeny and identification of Botryosphaeriaceae associated with pome and stone fruit trees in South Africa and other regions of the world. Plant Pathology, 56: 128–139.10.1111/j.1365-3059.2006.01486.x Search in Google Scholar

Untergasser, A., Cutcutache, I., Koressaar, T., Ye, J., Faircloth, B.C., Remm, M. and Rozen, S.G. 2012. Primer3--new capabilities and interfaces. Nucleic Acids Research, 40: 1–12.10.1093/nar/gks596 Search in Google Scholar

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Sujets de la revue:
Life Sciences, Plant Science, Zoology, other