Genetic diversity of the Carpathian capercaillie in space and time

Bajc, M. 2011. Genetic differentiation of the Western Capercaillie highlights the importance of Southeastern Europe for understanding the species phylogeography. PLoS One, 6 (8), e23602. BajcM. 2011 Genetic differentiation of the Western Capercaillie highlights the importance of Southeastern Europe for understanding the species phylogeography PLoS One 6 8 e23602 Search in Google Scholar

Banks, S.C., Piggott, M.P. 2022. Non-invasive genetic sampling is one of our most powerful and ethical tools for threatened species population monitoring: a reply to Lavery et al. Biodiversity Conservation, 31, 723–728. BanksS.C. PiggottM.P. 2022 Non-invasive genetic sampling is one of our most powerful and ethical tools for threatened species population monitoring: a reply to Lavery et al Biodiversity Conservation 31 723 728 Search in Google Scholar

Bergl, R.A., Vigilant, L. 2007. Genetic analysis reveals population structure and recent migration within the highly fragmented range of the Cross River gorilla. Molecular Ecology, 16, 501–516. BerglR.A. VigilantL. 2007 Genetic analysis reveals population structure and recent migration within the highly fragmented range of the Cross River gorilla Molecular Ecology 16 501 516 Search in Google Scholar

Brookfield, J.F.Y. 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology, 5, 453–455. BrookfieldJ.F.Y. 1996 A simple new method for estimating null allele frequency from heterozygote deficiency Molecular Ecology 5 453 455 Search in Google Scholar

Caizergues, A., Dubois, S., Mondor, G., Rasplus, J.F. 2001. Isolation and characterization of microsatellite loci in black grouse (Tetrao tetrix). Molecular Ecology Notes, 1 (1/2), 36–38. CaizerguesA. DuboisS. MondorG. RasplusJ.F. 2001 Isolation and characterization of microsatellite loci in black grouse (Tetrao tetrix) Molecular Ecology Notes 1 1/2 36 38 Search in Google Scholar

Caizergues, A., Rätti, O., Helle, P., Rotelli, L., Ellison, L., Rasplus, J.Y. 2008. Population genetic structure of male black grouse (Tetrao tetrix L.) in fragmented vs. continuous landscapes. Molecular Ecology, 12, 2297–2305. CaizerguesA. RättiO. HelleP. RotelliL. EllisonL. RasplusJ.Y. 2008 Population genetic structure of male black grouse (Tetrao tetrix L.) in fragmented vs. continuous landscapes Molecular Ecology 12 2297 2305 Search in Google Scholar

Coppes, J., Kochs, M., Ehrlacher, J., Suchant, R., Braunisch, V. 2015. The challenge of creating a large-scale capercaillie distribution map. Grouse News, 50, 21–23. CoppesJ. KochsM. EhrlacherJ. SuchantR. BraunischV. 2015 The challenge of creating a large-scale capercaillie distribution map Grouse News 50 21 23 Search in Google Scholar

Coppes, J., Ehrlacher, J., Thiel, D., Suchant, R., Braunisch, V. 2017. Outdoor recreation causes effective habitat reduction in capercaillie Tetrao urogallus: a major threat for geographically restricted populations. Journal of Avian Biology, 48, 1583–1594. CoppesJ. EhrlacherJ. ThielD. SuchantR. BraunischV. 2017 Outdoor recreation causes effective habitat reduction in capercaillie Tetrao urogallus: a major threat for geographically restricted populations Journal of Avian Biology 48 1583 1594 Search in Google Scholar

Earl, D.A., vonHoldt, B.M. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Research, 4, 359–361. EarlD.A. vonHoldtB.M. 2012 STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method Conservation Genetics Research 4 359 361 Search in Google Scholar

Escoda, L. et al. 2024. Genomic analysis of geographical structure and diversity in the capercaillie (Tetrao urogallus). Conservation Genetics, 25, 277–290. EscodaL. 2024 Genomic analysis of geographical structure and diversity in the capercaillie (Tetrao urogallus) Conservation Genetics 25 277 290 Search in Google Scholar

Evanno, G., Regnaut, S., Goudet, J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611–2620. EvannoG. RegnautS. GoudetJ. 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study Molecular Ecology 14 2611 2620 Search in Google Scholar

Gaggiotti, O.E. 1996. Population genetic models of source-sink metapopulations. Theoretical Population Biology, 50, 178–208. GaggiottiO.E. 1996 Population genetic models of source-sink metapopulations Theoretical Population Biology 50 178 208 Search in Google Scholar

Goudet, J. 2001. FSTAT V2.9.3, a program to estimate and test gene diversities and fixation indices. Available at http://www.unil.ch/izea/softwares/fstat.htlm GoudetJ. 2001 FSTAT V2.9.3, a program to estimate and test gene diversities and fixation indices Available at http://www.unil.ch/izea/softwares/fstat.htlm Search in Google Scholar

Jakobsson, M., Rosenberg, N.A. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801–1806. JakobssonM. RosenbergN.A. 2007 CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure Bioinformatics 23 1801 1806 Search in Google Scholar

Jepsen, M.R. et al. 2015. Transitions in European land-management regimes between 1800 and 2010. Land Use Policy, 49, 53–64. JepsenM.R. 2015 Transitions in European land-management regimes between 1800 and 2010 Land Use Policy 49 53 64 Search in Google Scholar

Jombart, T. 2008. ADEGENET: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403–1405. JombartT. 2008 ADEGENET: a R package for the multivariate analysis of genetic markers Bioinformatics 24 1403 1405 Search in Google Scholar

Jombart, T., Ahmed, I. 2011. ADEGENET 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics, 27 (21), 3070–3071. JombartT. AhmedI. 2011 ADEGENET 1.3-1: new tools for the analysis of genome-wide SNP data Bioinformatics 27 21 3070 3071 Search in Google Scholar

Jombart, T., Devillard, S., Balloux, F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11, 94. JombartT. DevillardS. BallouxF. 2010 Discriminant analysis of principal components: a new method for the analysis of genetically structured populations BMC Genetics 11 94 Search in Google Scholar

Klinga, P., Mikolás, M., Zhelev, P., Höglund, J., Paule, L. 2015. Genetic differentiation of western capercaillie in the Carpathian Mountains: the importance of post glacial expansions and habitat connectivity. Biological Journal of the Linnean Society, 116, 873–889. KlingaP. MikolásM. ZhelevP. HöglundJ. PauleL. 2015 Genetic differentiation of western capercaillie in the Carpathian Mountains: the importance of post glacial expansions and habitat connectivity Biological Journal of the Linnean Society 116 873 889 Search in Google Scholar

Klinga, P. et al. 2020. Temporal landscape genetic data indicate an ongoing disruption of gene flow in a relict bird species. Conservation Genetics, 21, 329–340. KlingaP. 2020 Temporal landscape genetic data indicate an ongoing disruption of gene flow in a relict bird species Conservation Genetics 21 329 340 Search in Google Scholar

Kulakowski, D., Svoboda, M., Bebi, P. 2017. The central role of disturbances in mountain forests of Europe. Forest Ecology and Management, 388, 1–2. DOI: https://doi.org/10.1016/j.foreco.2016.07.03 KulakowskiD. SvobodaM. BebiP. 2017 The central role of disturbances in mountain forests of Europe Forest Ecology and Management 388 1 2 DOI: https://doi.org/10.1016/j.foreco.2016.07.03 Search in Google Scholar

Kunz, F., Kohnen, A., Nopp-Mayr, U., Coppes, J. 2021. Past, present, future: tracking and simulating genetic differentiation over time in a closed metapopulation system. Conservation Genetics, 22, 355–368. KunzF. KohnenA. Nopp-MayrU. CoppesJ. 2021 Past, present, future: tracking and simulating genetic differentiation over time in a closed metapopulation system Conservation Genetics 22 355 368 Search in Google Scholar

Kunz, F. et al. 2022. Assessment of drivers of spatial genetic variation of a ground-dwelling bird species and its implications for conservation. Ecology and Evolution, 12, e8460. KunzF. 2022 Assessment of drivers of spatial genetic variation of a ground-dwelling bird species and its implications for conservation Ecology and Evolution 12 e8460 Search in Google Scholar

Mäki-Petäys, H., Corander, J., Aalto, J., Liukkonen, T., Helle, P., Orell, M. 2007. No genetic evidence of sex-biased dispersal in a lekking bird, the capercaillie (Tetrao urogallus). Journal of Evolutionary Biology, 20, 865–873. Mäki-PetäysH. CoranderJ. AaltoJ. LiukkonenT. HelleP. OrellM. 2007 No genetic evidence of sex-biased dispersal in a lekking bird, the capercaillie (Tetrao urogallus) Journal of Evolutionary Biology 20 865 873 Search in Google Scholar

Mikoláš, M. et al. 2017. Forest management impacts on capercaillie (Tetrao urogallus) habitat distribution and connectivity in the Carpathians. Landscape Ecology, 32, 163–179. MikolášM. 2017 Forest management impacts on capercaillie (Tetrao urogallus) habitat distribution and connectivity in the Carpathians Landscape Ecology 32 163 179 Search in Google Scholar

Mikoláš, M. et al. 2019. Primary forest distribution and representation in a Central European landscape: results of a large-scale field-based census. Forest Ecology and Management, 449, 117466. MikolášM. 2019 Primary forest distribution and representation in a Central European landscape: results of a large-scale field-based census Forest Ecology and Management 449 117466 Search in Google Scholar

Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583–589. NeiM. 1978 Estimation of average heterozygosity and genetic distance from a small number of individuals Genetics 89 583 589 Search in Google Scholar

Peakall, R., Smouse, P.E. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics Applications Note, 28 (19), 2537–2539. PeakallR. SmouseP.E. 2012 GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update Bioinformatics Applications Note 28 19 2537 2539 Search in Google Scholar

Paetkau, D., Slade, R., Burden, M., Estoup, A. 2004. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55–65. PaetkauD. SladeR. BurdenM. EstoupA. 2004 Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power Molecular Ecology 13 55 65 Search in Google Scholar

Pavlovska, M., Höglund, J. 2015. Ukrainian black grouse Tetrao tetrix: genetic diversity and population structure. Wildlife Biology, 21, 283–293. PavlovskaM. HöglundJ. 2015 Ukrainian black grouse Tetrao tetrix: genetic diversity and population structure Wildlife Biology 21 283 293 Search in Google Scholar

Rannala, B., Mountain, J.L. 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences USA, 94, 9197–9221. RannalaB. MountainJ.L. 1997 Detecting immigration by using multilocus genotypes Proceedings of the National Academy of Sciences USA 94 9197 9221 Search in Google Scholar

Sabatini, F.M. et al. 2018. Where are Europe’s last primary forests? Diversity and Distributions, 24, 1426–1439. SabatiniF.M. 2018 Where are Europe’s last primary forests? Diversity and Distributions 24 1426 1439 Search in Google Scholar

Schlaepfer, D.R., Braschler, B., Rusterholz, H.-P., Baur, B. 2018. Genetic effects of anthropogenic habitat fragmentation on remnant animal and plant populations: a meta-analysis. Ecosphere, 9 (10), e02488. SchlaepferD.R. BraschlerB. RusterholzH.-P. BaurB. 2018 Genetic effects of anthropogenic habitat fragmentation on remnant animal and plant populations: a meta-analysis Ecosphere 9 10 e02488 Search in Google Scholar

Svobodová, J., Segelbacher, G., Höglund, J. 2011. Genetic variation in black grouse populations with different lekking systems in the Czech Republic. Journal of Ornithology, 152, 37–44. SvobodováJ. SegelbacherG. HöglundJ. 2011 Genetic variation in black grouse populations with different lekking systems in the Czech Republic Journal of Ornithology 152 37 44 Search in Google Scholar

Petit, R.J., El Mousadik, A., Pons, O. 1998. Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844–855. PetitR.J. El MousadikA. PonsO. 1998 Identifying populations for conservation on the basis of genetic markers Conservation Biology 12 844 855 Search in Google Scholar

Piertney, S.B., Höglund, J. 2001. Polymorphic microsatellite DNA markers in black grouse (Tetrao tetrix). Molecular Ecology Notes, 1 (4), 303–304. PiertneyS.B. HöglundJ. 2001 Polymorphic microsatellite DNA markers in black grouse (Tetrao tetrix) Molecular Ecology Notes 1 4 303 304 Search in Google Scholar

Piry, S., Alapetite, A., Cornuet, J.M., Paetkau, D., Baudouin, L., Estoup, A. 2004. GeneClass2: A Software for Genetic Assignment and First-Generation Migrant Detection. Journal of Heredity, 95, 536–539. PiryS. AlapetiteA. CornuetJ.M. PaetkauD. BaudouinL. EstoupA. 2004 GeneClass2: A Software for Genetic Assignment and First-Generation Migrant Detection Journal of Heredity 95 536 539 Search in Google Scholar

Pritchard, J.K., Stephens, M., Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics, 155, 945–959. PritchardJ.K. StephensM. DonnellyP. 2000 Inference of population structure using multilocus genotype data Genetics 155 945 959 Search in Google Scholar

Raymond, M., Rousset, F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Heredity, 86, 248–249. RaymondM. RoussetF. 1995 GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism Heredity 86 248 249 Search in Google Scholar

R Core Team. 2017. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/ R Core Team 2017 R: A language and environment for statistical computing R Foundation for Statistical Computing Vienna, Austria https://www.R-project.org/ Search in Google Scholar

Rosenberg, N.A. 2004. DISTRUCT, a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137–138. RosenbergN.A. 2004 DISTRUCT, a program for the graphical display of population structure Molecular Ecology Notes 4 137 138 Search in Google Scholar

Rousset, F. 2008. Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103–106. RoussetF. 2008 Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux Molecular Ecology Resources 8 103 106 Search in Google Scholar

Rutkowski, R., Dulisz, B., Szczepański, S., Nowakowski, J.J., Zwijacz-Kozica, T., Krzan, P. 2017a. Conservation genetics of the capercaillie in Poland – estimating the size of the Tatra National Park population by the genotyping of non-invasive samples. Fragmenta Faunistica, 60, 119–128. RutkowskiR. DuliszB. SzczepańskiS. NowakowskiJ.J. Zwijacz-KozicaT. KrzanP. 2017a Conservation genetics of the capercaillie in Poland – estimating the size of the Tatra National Park population by the genotyping of non-invasive samples Fragmenta Faunistica 60 119 128 Search in Google Scholar

Rutkowski, R., Jagołkowska, P., Zawadzka, D., Bogdanowicz, W. 2016. Impacts of forest fragmentation and post-glacial colonization on the distribution of genetic diversity in the Polish population of the hazel grouse Terastes bonasia. European Journal of Wildlife Research, 62, 293–306. RutkowskiR. JagołkowskaP. ZawadzkaD. BogdanowiczW. 2016 Impacts of forest fragmentation and post-glacial colonization on the distribution of genetic diversity in the Polish population of the hazel grouse Terastes bonasia European Journal of Wildlife Research 62 293 306 Search in Google Scholar

Rutkowski, R., Keller, M., Jagołkowska, P. 2012. Population genetics of the hazel hen Bonasa bonasia in Poland assessed with non-invasive samples. Central European Journal of Biology, 7, 759–775. RutkowskiR. KellerM. JagołkowskaP. 2012 Population genetics of the hazel hen Bonasa bonasia in Poland assessed with non-invasive samples Central European Journal of Biology 7 759 775 Search in Google Scholar

Rutkowski, R., Zawadzka, D., Suchecka, E., Merta, D. 2017b. Conservation genetics of the capercaillie in Poland – delineation of conservation units. PLoS ONE, 2:e0174901. RutkowskiR. ZawadzkaD. SucheckaE. MertaD. 2017b Conservation genetics of the capercaillie in Poland – delineation of conservation units PLoS ONE 2 e0174901 Search in Google Scholar

Santorek, A., Kuligowska, B., Szczepański, S., Dulisz, B., Rutkowski, R. 2018. Ocena liczebności głuszca (Tetrao urogallus) w Babiogórskim Parku Narodowym na podstawie analiz genetycznych prób nieinwazyjnych. Studia i Materiały CEPL, 54 (4), 125−133. SantorekA. KuligowskaB. SzczepańskiS. DuliszB. RutkowskiR. 2018 Ocena liczebności głuszca (Tetrao urogallus) w Babiogórskim Parku Narodowym na podstawie analiz genetycznych prób nieinwazyjnych Studia i Materiały CEPL 54 4 125 133 Search in Google Scholar

Santorek, A., Zwijacz-Kozica, T., Dulisz, B., Merta, D., Rutkowski, R. 2020. Biased sex-ratio in woodland grouse population of the Tatra National Park, suggested by molecular sexing of non-invasive samples. Fragmenta Faunistica, 63 (2), 129–136. SantorekA. Zwijacz-KozicaT. DuliszB. MertaD. RutkowskiR. 2020 Biased sex-ratio in woodland grouse population of the Tatra National Park, suggested by molecular sexing of non-invasive samples Fragmenta Faunistica 63 2 129 136 Search in Google Scholar

Segelbacher, G., Paxton, R..J., Steinbruck, G., Trontelj, P., Storch, I. 2000. Characterization of microsatellites in capercaillie Tetrao urogallus (Aves). Molecular Ecology, 9 (11), 1934–1935. SegelbacherG. PaxtonR..J. SteinbruckG. TronteljP. StorchI. 2000 Characterization of microsatellites in capercaillie Tetrao urogallus (Aves) Molecular Ecology 9 11 1934 1935 Search in Google Scholar

Segelbacher, G., Storch, I., Tomiuk, J. 2003. Genetic evidence of capercaillie Tetrao urogallus dispersal sources and sinks in the Alps. Wildlife Biology, 9, 267–273. SegelbacherG. StorchI. TomiukJ. 2003 Genetic evidence of capercaillie Tetrao urogallus dispersal sources and sinks in the Alps Wildlife Biology 9 267 273 Search in Google Scholar

Sittenthaler, M. 2018. Fine-scale genetic structure in an eastern Alpine black grouse Tetrao tetrix metapopulation. Journal of Avian Biology, 49, jav-01681. SittenthalerM. 2018 Fine-scale genetic structure in an eastern Alpine black grouse Tetrao tetrix metapopulation Journal of Avian Biology 49 jav-01681. Search in Google Scholar

Szczepański, S., Santorek, A., Dulisz, B., Żurek, Z., Armatys, P., Rutkowski, R. 2019. How many of them? Genetic diversity, survival and effective population size of the capercaillie (Tetrao urogallus Linnaeus, 1758) population from the Gorce Mountains. Fragmenta Faunistica, 62 (2), 135–144. SzczepańskiS. SantorekA. DuliszB. ŻurekZ. ArmatysP. RutkowskiR. 2019 How many of them? Genetic diversity, survival and effective population size of the capercaillie (Tetrao urogallus Linnaeus, 1758) population from the Gorce Mountains Fragmenta Faunistica 62 2 135 144 Search in Google Scholar

Weir, B.S, Cockerham, C.C. 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358–1370. WeirB.S CockerhamC.C. 1984 Estimating F-statistics for the analysis of population structure Evolution 38 1358 1370 Search in Google Scholar

Więcław-Michniewska, J. 2013. Cities and towns in the Polish Carpathians: opportunities and limitations of urban development. In: The Carpathians: integrating nature and society towards sustainability (eds. J. Kozak, K. Ostapowicz, A. Bytnerowicz, B. Wyżga). Environmental Science and Engineering, Springer, Berlin, Heidelberg. Więcław-MichniewskaJ. 2013 Cities and towns in the Polish Carpathians: opportunities and limitations of urban development In: The Carpathians: integrating nature and society towards sustainability eds. KozakJ. OstapowiczK. BytnerowiczA. WyżgaB. Environmental Science and Engineering, Springer Berlin, Heidelberg Search in Google Scholar

Wright, S. 1943. Isolation by distance. Genetics, 28, 114–138. WrightS. 1943 Isolation by distance Genetics 28 114 138 Search in Google Scholar

Zawadzka, D. 2014. Podręcznik najlepszych praktyk ochrony głuszca i cietrzewia. Centrum Koordynacji Projektów Środowiskowych, Warszawa. ZawadzkaD. 2014 Podręcznik najlepszych praktyk ochrony głuszca i cietrzewia Centrum Koordynacji Projektów Środowiskowych Warszawa Search in Google Scholar

Zawadzka, D. et al. 2019. Population size and distribution of the capercaillie in Poland in the 21st century. Sylwan, 163, 733–783. ZawadzkaD. 2019 Population size and distribution of the capercaillie in Poland in the 21st century Sylwan 163 733 783 Search in Google Scholar

Żurek, Z., Armatys, P. 2011. Występowanie głuszca Tetrao urogallus w polskich Karpatach Zachodnich – wnioski z monitoringu w latach 2005−2010 oraz końcowa ocena liczebności karpackich subpopulacji głuszca i cietrzewia. Studia i Materiały CEPL, 27, 229−240. ŻurekZ. ArmatysP. 2011 Występowanie głuszca Tetrao urogallus w polskich Karpatach Zachodnich – wnioski z monitoringu w latach 2005−2010 oraz końcowa ocena liczebności karpackich subpopulacji głuszca i cietrzewia Studia i Materiały CEPL 27 229 240 Search in Google Scholar