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Polish Journal of Microbiology
Édition 67 (2018): Edition 2 (June 2018)
Accès libre
Global Transcriptome Changes of Biofilm-Forming
Staphylococcus epidermidis
Responding to Total Alkaloids of
Sophorea alopecuroides
CUI-PING GUAN
CUI-PING GUAN
,
HUI-XIA LUO
HUI-XIA LUO
,
H.E. FANG
H.E. FANG
et
XUE-ZHANG ZHOU
XUE-ZHANG ZHOU
| 30 juin 2018
Polish Journal of Microbiology
Édition 67 (2018): Edition 2 (June 2018)
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Article Category:
short-communication
Publié en ligne:
30 juin 2018
Pages:
223 - 226
Reçu:
06 juil. 2017
Accepté:
03 déc. 2017
DOI:
https://doi.org/10.21307/pjm-2018-024
Mots clés
sulfur metabolism
,
total alkaloids of
,
transcriptome
© 2018 Cui-Ping Guan et al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Fig. 1.
KEGG pathway scatter diagram of differentially expressed genes. Each pattern represents a KEGG pathway with its name listed in the right. X-coordinate represents the enrichment factor showing the ratio of all genes annotated in the pathway, in contrast to the differentially expressed genes annotated in the same pathway. The smaller the enrichment factor, the enrichment level of the differentially expressed genes was more significant in this pathway. Y-coordinate represents log10(Q_value). The higher the absolute Q_value, the enrichment level of the differentially expressed genes was more significant and reliable in this pathway.
Fig. 2.
Distribution of the differentially expressed genes in a sulfur metabolism pathway. Compared to the control group, the enzyme marked by a green frame is related to a drown-regulated gene product. The number in the frame represents the enzyme code.
Fig. 3.
Comparison of folds changes detected by RNA-seq (RPKM) and q-PCR.Bars represent the log2 value of the fold changes of the gene expressions between the control and TASA treatment groups. On the top of the bars are the abbreviations of enzymes encoded by the nine genes.