Prevalence of the root lesion nematode virus (RLNV1) in populations of Pratylenchus penetrans from North America

Ayoub, S. M. 1980. Plant nematology, an agricultural training aid NemaAid Publications, Sacramento, CA. Ayoub S. M. 1980 . Plant nematology, an agricultural training aid NemaAid Publications , Sacramento, CA . Search in Google Scholar

Bekal, S., Domier, L. L., Niblack, T. L. and Lambert, K. N. 2011. Discovery and initial analysis of novel viral genomes in the soybean cyst nematode. Journal of General Virology 92:1870–1879. Bekal S. Domier L. L. Niblack T. L. and Lambert K. N. 2011 . Discovery and initial analysis of novel viral genomes in the soybean cyst nematode . Journal of General Virology 92 : 1870 – 1879 . 10.1099/vir.0.030585-021490246 Search in Google Scholar

Bekal, S., Domier, L. L., Gonfa, B., McCoppin, N. K., Lambert, K. N. and Bhalerao, K. 2014. A novel flavivirus in the soybean cyst nematode. Journal of General Virology 95:1272–1280. Bekal S. Domier L. L. Gonfa B. McCoppin N. K. Lambert K. N. and Bhalerao K. 2014 . A novel flavivirus in the soybean cyst nematode . Journal of General Virology 95 : 1272 – 1280 . 10.1099/vir.0.060889-024643877 Search in Google Scholar

Castillo, P. and Vovlas, N. 2007. Pratylenchus (Nematoda: Pratylenchidae): Diagnosis, Biology, Pathogenicity and Management. Series: Nematology Monographs and Perspectives, Brill Leiden-Boston. Castillo P. and Vovlas N. 2007 . Pratylenchus (Nematoda: Pratylenchidae): Diagnosis, Biology, Pathogenicity and Management. Series: Nematology Monographs and Perspectives , Brill Leiden-Boston . 10.1163/ej.9789004155640.i-523 Search in Google Scholar

Edgar, R. C. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. Edgar R. C. 2004 . MUSCLE: a multiple sequence alignment method with reduced time and space complexity . BMC Bioinformatics 5 : 113 . 10.1186/1471-2105-5-11351770615318951 Search in Google Scholar

Félix, M. -A., Ashe, A., Piffaretti, J., Wu, G., Nuez, I., Bélicard, T., Jiang, Y., Zhao, G., Franz, C. J., Goldstein, L. D., Sanroman, M., Miska, E. A. and Wang, D. 2011. Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to Nodaviruses. PLoS Biology 9:e1000586. Félix M. -A. Ashe A. Piffaretti J. Wu G. Nuez I. Bélicard T. Jiang Y. Zhao G. Franz C. J. Goldstein L. D. Sanroman M. Miska E. A. and Wang D. 2011 . Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to Nodaviruses . PLoS Biology 9 : e1000586 . 10.1371/journal.pbio.1000586302676021283608 Search in Google Scholar

Félix, M.-A. and Wang, D. 2019. Natural viruses of Caenorhabditis nematodes. Annual Review of Genetics 53:313–326. Félix M.-A. and Wang D. 2019 . Natural viruses of Caenorhabditis nematodes . Annual Review of Genetics 53 : 313 – 326 . 10.1146/annurev-genet-112618-04375631424970 Search in Google Scholar

Franz, C. J., Zhao, G., Felix, M.-A. and Wang, D. 2012. Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus. Journal of Virology 86:11940. Franz C. J. Zhao G. Felix M.-A. and Wang D. 2012 . Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus . Journal of Virology 86 : 11940 . 10.1128/JVI.02025-12348633123043172 Search in Google Scholar

Frézal, L., Jung, H., Tahan, S., Wang, D. and Félix, M.-A. 2019. Noda-like RNA viruses infecting Caenorhabditis nematodes: sympatry, diversity and reassortment. Journal of Virology 93: e01170-19. Frézal L. Jung H. Tahan S. Wang D. and Félix M.-A. 2019 . Noda-like RNA viruses infecting Caenorhabditis nematodes: sympatry, diversity and reassortment . Journal of Virology 93 : e01170-19 . 10.1128/JVI.01170-19680329031434736 Search in Google Scholar

Jones, J. T., Haegeman, A., Danchin, E. G., Gaur, H. S., Helder, J., Jones, M. G., Kikuchi, T., Manzalinna-López, R., Palomares-Rius, J. E., Wesemael, W. M. and Perry, R. N. 2013. Top 10 plant-parasitic nematodes in molecular plant pathology. Molecular Plant Pathology 14: 946–961. Jones J. T. Haegeman A. Danchin E. G. Gaur H. S. Helder J. Jones M. G. Kikuchi T. Manzalinna-López R. Palomares-Rius J. E. Wesemael W. M. and Perry R. N. 2013 . Top 10 plant-parasitic nematodes in molecular plant pathology . Molecular Plant Pathology 14 : 946 – 961 . 10.1111/mpp.12057663876423809086 Search in Google Scholar

Lin, J., Ye, R., Thekke-Veetil, T., Staton, M. E., Arelli, P. R., Bernard, E. C., Hewezi, T., Domier, L. L. and Hajimorad, M. R. 2018. A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus. Journal of General Virology 99: 1418–1424. Lin J. Ye R. Thekke-Veetil T. Staton M. E. Arelli P. R. Bernard E. C. Hewezi T. Domier L. L. and Hajimorad M. R. 2018 . A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus . Journal of General Virology 99 : 1418 – 1424 . 10.1099/jgv.0.00113930156527 Search in Google Scholar

Peetz, A. B. and Zasada, I. A. 2016. Species-specific diagnostics using a β-1,4-endoglucanase gene for Pratylenchus spp. occurring in the Pacific Northwest of North America. Nematology 18: 1219–1229. Peetz A. B. and Zasada I. A. 2016 . Species-specific diagnostics using a β-1,4-endoglucanase gene for Pratylenchus spp. occurring in the Pacific Northwest of North America . Nematology 18 : 1219 – 1229 . 10.1163/15685411-00003026 Search in Google Scholar

Ruark, C. L., Koenning, S. R., Davis, E. L., Opperman, C. H., Lommel, S. A., Mitchum, M. G. and Sit, T. L. 2017. Soybean cyst nematode culture collections and field populations from North Carolina and Missouri reveal high incidences of infection by viruses. PLoS One 12:e0171514. Ruark C. L. Koenning S. R. Davis E. L. Opperman C. H. Lommel S. A. Mitchum M. G. and Sit T. L. 2017 . Soybean cyst nematode culture collections and field populations from North Carolina and Missouri reveal high incidences of infection by viruses . PLoS One 12 : e0171514 . 10.1371/journal.pone.0171514528373828141854 Search in Google Scholar

Ruark, C. L., Gardner, M., Mitchum, M. G., Davis, E. L. and Sit, T. L. 2018. Novel RNA viruses within plant parasitic cyst nematodes. PLoS One 13:e0193881. Ruark C. L. Gardner M. Mitchum M. G. Davis E. L. and Sit T. L. 2018 . Novel RNA viruses within plant parasitic cyst nematodes . PLoS One 13 : e0193881 . 10.1371/journal.pone.0193881583958129509804 Search in Google Scholar

Shi, M., Lin, X.-D., Tian, J.-H., Chen, L.-J., Chen, X., Li, C.-X., Qin, X.-C., Li, J., Cao, J.-P., Eden, J.-S., Buchmann, J., Wang, W., Xu, J., Holmes, E. C. and Zhang, Y.-Z. 2016. Redefining the invertebrate RNA virosphere. Nature 540: 539–543. Shi M. Lin X.-D. Tian J.-H. Chen L.-J. Chen X. Li C.-X. Qin X.-C. Li J. Cao J.-P. Eden J.-S. Buchmann J. Wang W. Xu J. Holmes E. C. and Zhang Y.-Z. 2016 . Redefining the invertebrate RNA virosphere . Nature 540 : 539 – 543 . 10.1038/nature2016727880757 Search in Google Scholar

Vieira, P. and Nemchinov, L. G. 2019. A novel species of RNA virus associated with root lesion nematode Pratylenchus penetrans. Journal of General Virology 100: 704–708. Vieira P. and Nemchinov L. G. 2019 . A novel species of RNA virus associated with root lesion nematode Pratylenchus penetrans . Journal of General Virology 100 : 704 – 708 . 10.1099/jgv.0.00124630869581 Search in Google Scholar

Vieira, P., Eves-van den Akker, S., Verma, R., Wantoch, S., Eisenback, J. D. and Kamo, K. 2015. The Pratylenchus penetrans transcriptome as a source for the development of alternative control strategies: mining for putative genes involved in parasitism and evaluation of in planta RNAi. PLoS One 10:e0144674. Vieira P. Eves-van den Akker S. Verma R. Wantoch S. Eisenback J. D. and Kamo K. 2015 . The Pratylenchus penetrans transcriptome as a source for the development of alternative control strategies: mining for putative genes involved in parasitism and evaluation of in planta RNAi . PLoS One 10 : e0144674 . 10.1371/journal.pone.0144674468437126658731 Search in Google Scholar

Williams, S. H., Che, X., Oleynik, A., Garcia, J. A., Muller, D., Zabka, T. S., Firth, C., Corrigan, R. M., Briese, T., Jain, K. and Wi, L. 2019. Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City. Journal of General Virology 100: 1350–1362. Williams S. H. Che X. Oleynik A. Garcia J. A. Muller D. Zabka T. S. Firth C. Corrigan R. M. Briese T. Jain K. and Wi L. 2019 . Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City . Journal of General Virology 100 : 1350 – 1362 . 10.1099/jgv.0.001315736330531513008 Search in Google Scholar

Zasada, I. A., Kitner, M. L., Wram, C., Wade, N., Ingham, R. E., Hafez, S., Mojtahedi, H., Chavoshi, S. and Hammack, N. 2019. Trends in occurrence, distribution, and population densities of plant-parasitic nematodes in the Pacific Northwest of the United States from 2012 to 2016. Plant Health Progress 20: 20–28. Zasada I. A. Kitner M. L. Wram C. Wade N. Ingham R. E. Hafez S. Mojtahedi H. Chavoshi S. and Hammack N. 2019 . Trends in occurrence, distribution, and population densities of plant-parasitic nematodes in the Pacific Northwest of the United States from 2012 to 2016 . Plant Health Progress 20 : 20 – 28 . 10.1094/PHP-11-18-0077-RS Search in Google Scholar