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Armstrong, M. R., Blok, V. C. and Phillips, M. S. 2000. A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida. Genetics 154: 181–92.ArmstrongM. R.BlokV. C. and PhillipsM. S.2000. A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida. Genetics154: 181–92.10.1093/genetics/154.1.181146089610628979Search in Google Scholar
Baldwin, J. G. and Handoo, Z. A. 2018. General morphology of cyst nematodes. In Perry, R. N., Moens, M. and Jones, J. T. (Eds), Cyst nematodes CABI, Wallingford, Oxfordshire, 337–364.BaldwinJ. G. and HandooZ. A.2018. General morphology of cyst nematodes. In PerryR. N.MoensM. and JonesJ. T. (Eds), Cyst nematodesCABI, Wallingford, Oxfordshire, 337–364.10.1079/9781786390837.0337Search in Google Scholar
Bernard, E. C., Handoo, Z. A., Powers, T. O., Donald, P. A. and Heinz, R. D. 2010. Vittatidera zeaphila (Nematoda: Heteroderidae), a new genus and species of cyst nematode parasitic on corn (Zea mays). Journal of Nematology 42:139–150.BernardE. C.HandooZ. A.PowersT. O.DonaldP. A. and HeinzR. D.2010. Vittatidera zeaphila (Nematoda: Heteroderidae), a new genus and species of cyst nematode parasitic on corn (Zea mays). Journal of Nematology42:139–150.Search in Google Scholar
Carta, L. K. and Li, S. 2018. Improved 18S small subunit rDNA primers for problematic nematode amplification. Journal of Nematology 50:533–542.CartaL. K. and LiS.2018. Improved 18S small subunit rDNA primers for problematic nematode amplification. Journal of Nematology50:533–542.10.21307/jofnem-2018-051690929231094155Search in Google Scholar
Darriba, D., Taboada, G., Doallo, R. and Posada, D. (2012), jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9:772.DarribaD.TaboadaG.DoalloR. and PosadaD. (2012), jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9:772.10.1038/nmeth.2109459475622847109Search in Google Scholar
De Ley, P., Tandingan De Ley, I., Morris, K., Abebe, E., Mundo-Ocampo, M., Yoder, M., Heras, J., Waumann, D., Rocha-Olivares, A., Burr, A. H. J., Baldwin, J. G. and Thomas, W. K. 2005. An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding. Philosophical Transactions of the Royal Society B 360:1945–1958.De LeyP.Tandingan De LeyI.MorrisK.AbebeE.Mundo-OcampoM.YoderM.HerasJ.WaumannD.Rocha-OlivaresA.BurrA. H. J.BaldwinJ. G. and ThomasW. K.2005. An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding. Philosophical Transactions of the Royal Society B360:1945–1958.10.1098/rstb.2005.1726160921716214752Search in Google Scholar
DeLuca, F., Vovlas, N., Lucarelli, G., Troccoli, A., Radicci, V., Fanelli, E., Cantalapiedra-Navarrete, C., Palomares-Ruis, J. E. and Castillo, P. 2013. Heterodera elachista the Japanese cyst nematode parasitizing corn in Northern Italy: integrative diagnosis and bionomics. European Journal of Plant Pathology 136:857–872.DeLucaF.VovlasN.LucarelliG.TroccoliA.RadicciV.FanelliE.Cantalapiedra-NavarreteC.Palomares-RuisJ. E. and CastilloP.2013. Heterodera elachista the Japanese cyst nematode parasitizing corn in Northern Italy: integrative diagnosis and bionomics. European Journal of Plant Pathology136:857–872.10.1007/s10658-013-0212-9Search in Google Scholar
Donald, P. A., Heinz, R., Bernard, E., Hershman, D., Hensley, D., Flint-Garcia, S. and Joost, R. 2012. Distribution, host status and potential sources of resistance to Vittatidera zaeaphila. Nematropica 42:91–95.DonaldP. A.HeinzR.BernardE.HershmanD.HensleyD.Flint-GarciaS. and JoostR.2012. Distribution, host status and potential sources of resistance to Vittatidera zaeaphila. Nematropica42:91–95.Search in Google Scholar
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.EdgarR. C.2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research32:1792–1797.10.1093/nar/gkh34039033715034147Search in Google Scholar
Golden, A. M. 1990. Preparation and mounting nematodes for microscopic observations. In Zuckerman, B. M., Mai, W. F. and Krusberg, L. R. (Eds), Plant nematology laboratory manual University of Massachusetts Agricultural Experiment Station, Amherst, MA, pp. 197–205.GoldenA. M.1990. Preparation and mounting nematodes for microscopic observations. In ZuckermanB. M.MaiW. F. and KrusbergL. R. (Eds), Plant nematology laboratory manualUniversity of Massachusetts Agricultural Experiment Station, Amherst, MA, pp. 197–205.Search in Google Scholar
Handoo, Z. A. and Subbotin, S. A. 2018. Taxonomy, identification and principal species. In Perry, R. N., Moens, M. and Jones, J. T. (Eds), Cyst nematodes CABI, Wallingford, Oxfordshire, pp. 365–398.HandooZ. A. and SubbotinS. A.2018. Taxonomy, identification and principal species. In PerryR. N.MoensM. and JonesJ. T. (Eds), Cyst nematodesCABI, Wallingford, Oxfordshire, pp. 365–398.10.1079/9781786390837.0365Search in Google Scholar
Hoang, D. T., Chernomor, O., von Haeseler, A., Minh, B. Q. and Vinh, L. S. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35:518–522.HoangD. T.ChernomorO.von HaeselerA.MinhB. Q. and VinhL. S.2018. UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution35:518–522.10.1093/molbev/msx281585022229077904Search in Google Scholar
Holterman, M., van der Wurff, A., van den Elsen, S., van Megen, H., Bongers, T., Holovachov, O., Bakker, J. and Helder, J. 2006. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution 23:1792–1800.HoltermanM.van der WurffA.van den ElsenS.van MegenH.BongersT.HolovachovO.BakkerJ. and HelderJ.2006. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution23:1792–1800.10.1093/molbev/msl04416790472Search in Google Scholar
Hooper, D. J. 1970. Handling, fixing, staining, and mounting nematodes. In Southey, J. F. (Ed.). Laboratory methods for work with plant and soil nematodes 5th ed., Her Majesty’s Stationery Office, London, pp. 39–54.HooperD. J.1970. Handling, fixing, staining, and mounting nematodes. In SoutheyJ. F. (Ed.). Laboratory methods for work with plant and soil nematodes5th ed., Her Majesty’s Stationery Office, London, pp. 39–54.Search in Google Scholar
Howlett, B. J., Brownlee, A. G., Guest, D. I., Adcock, G. J. and McFadden, G. I. 1992. The 5S ribosomal RNA gene is linked to large and small subunit ribosomal RNA genes in the oomycetes, Phytophthora vignae, P. cinnamomi, P. megaspera f. sp. glycinae and Saprolegnia ferax. Current Genetics 22:455–61.HowlettB. J.BrownleeA. G.GuestD. I.AdcockG. J. and McFaddenG. I.1992. The 5S ribosomal RNA gene is linked to large and small subunit ribosomal RNA genes in the oomycetes, Phytophthora vignae, P. cinnamomi, P. megaspera f. sp. glycinae and Saprolegnia ferax. Current Genetics22:455–61.Search in Google Scholar
Huelsenbeck, J. P. and Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755.HuelsenbeckJ. P. and RonquistF.2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics17:754–755.10.1093/bioinformatics/17.8.75411524383Search in Google Scholar
Joyce, S. A., Reid, A., Driver, F. and Curran, J. 1994. Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes. In Burnell, A. M., Ehlers, R. -U. and Masson, J. P. (Eds), COST 812 Biotechnology: Genetics of Entomopathogenic Nematode-Bacterium Complexes. Proc. Symp. Workshop, St. Patrick’s College, Maynooth, Co. Kildare, Ireland. Luxembourg: European Commission, DG XII, pp. 178–87.JoyceS. A.ReidA.DriverF. and CurranJ.1994. Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes. InBurnellA. M.EhlersR. -U. and MassonJ. P. (Eds), COST 812 Biotechnology: Genetics of Entomopathogenic Nematode-Bacterium Complexes. Proc. Symp. Workshop, St. Patrick’s College, Maynooth, Co. Kildare, Ireland. Luxembourg: European Commission, DG XII, pp. 178–87.Search in Google Scholar
Kalyaanamoorthy, S., Minh, B. Q., Wong, T. K. F., von Haeseler, A. and Jermiin, L. S. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14:587–589.KalyaanamoorthyS.MinhB. Q.WongT. K. F.von HaeselerA. and JermiinL. S.2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods14:587–589.10.1038/nmeth.4285545324528481363Search in Google Scholar
Miller, M. A., Pfeiffer, W. and Schwartz, T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, LA, 14 November, pp. 1–8.MillerM. A.PfeifferW. and SchwartzT.2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, LA, 14 November, pp. 1–8.Search in Google Scholar
Nguyen, L.-T., Schmidt, H. A., von Haeseler, A. and Minh, B. Q. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution 32:268–274.NguyenL.-T.SchmidtH. A.von HaeselerA. and MinhB. Q.2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution32:268–274.10.1093/molbev/msu300427153325371430Search in Google Scholar
Phillips, W. S., Brown, A. M. V., Howe, D. K., Peetz, A. B., Blok, V.C., Denver, D. R. and Zasada, I. A. 2016. The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics 17: 706, doi: 10.1186/s12864-016-3047-x.PhillipsW. S.BrownA. M. V.HoweD. K.PeetzA. B.BlokV.C.DenverD. R. and ZasadaI. A.2016. The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics17: 706, doi: 10.1186/s12864-016-3047-x.501199127595608Open DOISearch in Google Scholar
Powers, T., Skantar, A., Harris, T., Higgins, R., Mullin, P., Hafez, S., Handoo, Z., Todd, T. and Powers, K. 2019. DNA barcoding evidence for the North American presence of alfalfa cyst nematode, Heterodera medicaginis. Journal of Nematology 51:e2019–16.PowersT.SkantarA.HarrisT.HigginsR.MullinP.HafezS.HandooZ.ToddT. and PowersK.2019. DNA barcoding evidence for the North American presence of alfalfa cyst nematode, Heterodera medicaginis. Journal of Nematology51:e2019–16.Search in Google Scholar
Sievers, F., Wilm, A., Dineen, D. G., Gibson, T. J., Karplus, K., Li, W., Lopez, R., McWilliam, H., Remmert, M., Söding, J., Thompson, J. D. and Higgins, D. G. 2011. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology 7:539.SieversF.WilmA.DineenD. G.GibsonT. J.KarplusK.LiW.LopezR.McWilliamH.RemmertM.SödingJ.ThompsonJ. D. and HigginsD. G.2011. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology7:539.10.1038/msb.2011.75326169921988835Search in Google Scholar
Skantar, A. M. and Carta, L. K. 2004. Molecular characterization and phylogenetic evaluation of the Hsp90 gene from selected nematodes. Journal of Nematology 36:466–480.SkantarA. M. and CartaL. K.2004. Molecular characterization and phylogenetic evaluation of the Hsp90 gene from selected nematodes. Journal of Nematology36:466–480.Search in Google Scholar
Skantar, A. M., Handoo, Z. A., Carta, L. K. and Chitwood, D. J. 2007. Morphological and molecular identification of Globodera pallida associated with potato in Idaho. Journal of Nematology 39:133–144.SkantarA. M.HandooZ. A.CartaL. K. and ChitwoodD. J.2007. Morphological and molecular identification of Globodera pallida associated with potato in Idaho. Journal of Nematology39:133–144.Search in Google Scholar
Subbotin, S. A. 2015. Heterodera sturhani sp. n. from China, a new species of the Heterodera avenae species complex (Tylenchida: Heteroderidae). Russian Journal of Nematology 23:145–152.SubbotinS. A.2015. Heterodera sturhani sp. n. from China, a new species of the Heterodera avenae species complex (Tylenchida: Heteroderidae). Russian Journal of Nematology23:145–152.Search in Google Scholar
Subbotin, S. A. and Skantar, A. M. 2018. Molecular taxonomy and phylogeny. In Perry, R. N., Moens, M. and Jones, J. T. (Eds), Cyst nematodes CABI, Wallingford, Oxfordshire, pp. 399–418.SubbotinS. A. and SkantarA. M.2018. Molecular taxonomy and phylogeny. In PerryR. N.MoensM. and JonesJ. T. (Eds), Cyst nematodesCABI, Wallingford, Oxfordshire, pp. 399–418.10.1079/9781786390837.0399Search in Google Scholar
Thomas, W. K., Vida, J. T., Frisse, L. M., Mundo, M. and Baldwin, J. G. 1997. DNA sequences from formalin-fixed nematodes: integrating molecular and morphological approaches to taxonomy. Journal of Nematology 29:250–254.ThomasW. K.VidaJ. T.FrisseL. M.MundoM. and BaldwinJ. G.1997. DNA sequences from formalin-fixed nematodes: integrating molecular and morphological approaches to taxonomy. Journal of Nematology29:250–254.Search in Google Scholar
Ye, W., Giblin-Davis, R. M., Davies, K. A., Purcell, M. F., Scheffer, S. J., Taylor, G. S., Center, T. D., Morris, K. and Thomas, W. K. 2007. Molecular phylogenetics and the evolution of host plant associations in the nematode genus Fergusobia (Tylenchida: Fergusobiinae). Molecular Phylogenetics and Evolution 45:123–141.YeW.Giblin-DavisR. M.DaviesK. A.PurcellM. F.SchefferS. J.TaylorG. S.CenterT. D.MorrisK. and ThomasW. K.2007. Molecular phylogenetics and the evolution of host plant associations in the nematode genus Fergusobia (Tylenchida: Fergusobiinae). Molecular Phylogenetics and Evolution45:123–141.10.1016/j.ympev.2007.02.02717434761Search in Google Scholar