[ADAMS, W. T. (1981): Population genetics and gene conservation in Pacific Northwest conifers. In: SCUDDER, G. G. E., REVEAL, J. L. (eds) Evolution today, Proc 2nd Int Cong Syst Evol Biol. Hunt lnst Bot Document, Pittsburgh, pp 401-415.]Search in Google Scholar
[ADES, P. K. and J. A. SIMPSON (1991): Variation in susceptibility to Dothistroma needle blight among provenances of Pinus radiata var. radiata. Silvae Genet 40: 6-13.]Search in Google Scholar
[AITKEN, S. N. (2000): Conserving adaptive variation in forest ecosystems. J Sustain For 10: 1-12.10.1300/J091v10n01_01]Search in Google Scholar
[BELL, J. C., M. POWELL, M. DEVEY and G. F. MORAN (2004): DNA profiling, pedigree lineage analysis and monitoring in the Australian breeding program of radiata pine. Silvae Genet. 53 (3): 130-134.10.1515/sg-2004-0023]Search in Google Scholar
[BROWN, A. H. D. and M. T. CLEGG (1983): Isozyme assessment of plant genetic resources. In: Isozymes: current topics in biological and medical research, vol 11. Alan R Liss, New York, pp 285-295.]Search in Google Scholar
[BROWN, A. H. D. and G. F. MORAN (1981): Isozymes and the genetic resources of forest trees. In: CONKLE, M. T. (ed) Isozymes of North American forest trees and forest insects. USDA, Berkeley, pp 1-10.]Search in Google Scholar
[BROWN, G. R., G. P. GILL, R. J. KUNTZ, C. H. LANGLEY and D. B. NEALE (2004): Nucleotide diversity and linkage disequilibrium in loblolly pine. Proc Nat Acad Sci USA 101: 15255-15260.10.1073/pnas.040423110152404715477602]Search in Google Scholar
[BURDON, R. D. (1997): Genetic diversity for the future: Conservation or creation and capture? Pp. 237-246. In: BURDON, R. D., J. M. MOORE (eds) IUFRO ’97 Genetics of Radiata Pine: proceedings of NZFRI - IUFRO Conference, December 1-4, and Workshop December 5 1997, Rotorua, NZ. New Zealand Forest Research Institute, FRI Bull. No. 203.]Search in Google Scholar
[BURDON, R. D., M. H. BANNISTER, H. A. I. MADGWICK and C. A. LOW (1992a): Genetic survey of Pinus radiata. 1. Introduction, description of experiment and basic methodology. NZ J For Sci 22: 119-137.]Search in Google Scholar
[BURDON, R. D., M. H. BANNISTER and C. A. LOW (1992b): Genetic survey of Pinus radiata. 2: Population comparisons for growth rate, disease resistance, and morphology. N Z J For Sci 22: 138-159.]Search in Google Scholar
[BURDON, R. D., P. BROEKHUIZEN and J. A. ZABKIEWICZ (1997): Comparison of native-population and New Zealand land-race samples of Pinus radiata using cortical oleoresin monoterpenes. Pp 50-56. In: BURDON, R. D., MOORE, J. M. (eds) IUFRO ’97 Genetics of Radiata Pine: proceedings of NZFRI - IUFRO Conference, December 1-4, and Workshop December 5 1997, Rotorua, NZ. New Zealand Forest Research Institute, FRI Bull. No. 203.]Search in Google Scholar
[BURDON, R. D., M. J. CARSON and C. J. A. SHELBOURNE (2008): Achievement in forest tree improvement in Australia and New Zealand Pinus radiata in New Zealand. Aust For 71: 263-279.10.1080/00049158.2008.10675045]Search in Google Scholar
[BURLEY, J. (2001): Genetics in sustainable forestry: the challenges for forest genetics and tree breeding in the new millennium. Can J For Res 31: 561-565.10.1139/x00-135]Search in Google Scholar
[CHARLESWORTH, D. and J. H. WILLIS (2009): The genetics of inbreeding depression. Nature Rev Genet 10: 783-796.10.1038/nrg266419834483]Search in Google Scholar
[DEVEY, M. E., J. C. BELL, T. L. UREN and G. F. MORAN (2002): A set of microsatellite markers for fingerprinting and breeding applications in Pinus radiata. Genom 45: 984-989.10.1139/g02-06412416633]Search in Google Scholar
[DEVEY, M. E., S. D. CARSON, M. F. NOLAN, A. C. MATHESON, C. T. RIINI and J. HOHEPA (2004): QTL associations for density and diameter in Pinus radiata and the potential for marker-aided selection. Theor Appl Genet 108: 516-524.10.1007/s00122-003-1446-214657985]Search in Google Scholar
[DILLON, S. K., M. NOLAN, W. LI, C. BELL, H. X. WU and S. G. SOUTHERTON (2010): Allelic variation in cell wall candidate genes affecting solid wood properties in natural populations and land races of Pinus radiata. Genet 185: 1477-1487.10.1534/genetics.110.116582292777120498299]Search in Google Scholar
[DILLON, S. K., M. NOLAN, P. MATTER, J. BRAGG, W. J. GAPARE and S. G. SOUTHERTON (2013): Signatures of adaptation and genetic structure among the mainland populations of Pinus radiata D. Don inferred from SNP loci. Tree Genet. Genomes 9: 1447-1463.]Search in Google Scholar
[DOYLE, J. J. and J. L. DOYLE (1990): Isolation of plant DNA from fresh tissue. Focus 12: 13-15.]Search in Google Scholar
[DUNGEY, H. S., J. T. BRAWNER, F. BURGER, M. CARSON, M. HENSON, P. JEFFERSON and A. C. MATHESON (2009): A new breeding strategy for Pinus radiata in New Zealand and New South Wales. Silvae Genet 58: 28-38.10.1515/sg-2009-0004]Search in Google Scholar
[ELDRIDGE, K. G. (1978): Refreshing the genetic resources of radiata pine plantations In. Division of Forest Research: Genetics Section Report Number 7 CSIRO. 1-120.]Search in Google Scholar
[ELLSTRAND, N. C. and D. L. MARSHALL (1985): The impact of domestication on the distribution of allozyme variation within and among cultivars of radish, Raphanus sativus L. Theor Appl Genet 69: 393-398.10.1007/BF0057090824253908]Search in Google Scholar
[FALCONER, D. S. and T. F. C. MACKAY (1996): Introduction to Quantitative Genetics, 4th edn. Longman, London and New York.]Search in Google Scholar
[FAY, J. C. and C. I. WU (2000): Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.10.1093/genetics/155.3.1405146115610880498]Search in Google Scholar
[GAPARE, W. J., B. S. BALTUNIS, M. IVKOVICH, C. B. LOW, P. JEFFERSON and H. X. WU (2011): Performance differences among ex situ native-provenance collections of Pinus radiata D. Don. 1: potential for infusion into breeding populations in Australia and New Zealand. Tree Genet. Genomes 7: 409-419.10.1007/s11295-010-0343-5]Search in Google Scholar
[GAPARE, W. J., M. IVKOVICH, G. W. DUTKOWSKI, D. J. SPENCER, P. BUXTON and H. X. WU (2012a): Genetic parameters and provenance variation of Pinus radiata D. Don. ‘Eldridge collection’ in Australia 1: growth and form traits. Tree Genet. Genomes 8: 391-407.10.1007/s11295-011-0449-4]Search in Google Scholar
[GAPARE, W. J., M. IVKOVICH, S. K. DOLLIN, F. CHEN, E. EVANS and H. X. WU (2012b): Genetic parameters and provenance variation of Pinus radiata D. Don. ‘Eldridge collection’ in Australia 2: wood properties Tree Genet. Genomes 8: 895-910.10.1007/s11295-012-0475-x]Search in Google Scholar
[GODT, M. J. W., J. L. HAMRICK, M. A. EDWARDS-BURKE andJ. H. WILLIAMS (2001): Comparisons of genetic diversity in white spruce (Picea glauca) and jack pine (Pinus banksiana) seed orchards with natural populations. Can J For Res 31: 943-949.10.1139/x01-024]Search in Google Scholar
[GRATTAPAGLIA, D. and M. KIRST (2008): Eucalyptus applied genomics: from gene sequences to breeding tools. New Phyto 179: 911- 929.10.1111/j.1469-8137.2008.02503.x18537893]Search in Google Scholar
[HARTL, D. L. and A. G. CLARK (1997): Principles of Population Genetics, 3rd edn. Sinauer Associates, Sunderland, Massachusetts, USA.]Search in Google Scholar
[HEUERTZ, M., E. DE PAOLI, T. KÄLLMAN, H. LARSSON, I. JURMAN and M. MORGANTE et al. (2006): Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway Spruce [Picea abies (L.) Karst]. Genet 174: 2095-2105.10.1534/genetics.106.065102169865617057229]Search in Google Scholar
[JARAMILLO-CORREA, J. P., J. BEAULIEU and J. BOUSQUET (2001): Contrasting evolutionary forces driving population structure at ESTPs, allozymes and quantitative traits in white spruce. Mol Ecol 10: 2729-2740.10.1046/j.0962-1083.2001.01386.x11883886]Search in Google Scholar
[JOHNSON, I. G., P. K. ADES and K. G. ELDRIDGE (1997): Growth of natural Californian provenances of Pinus radiata in New South Wales, Australia. N Z J For Sci 27: 23-38.]Search in Google Scholar
[JOHNSON, R., B. ST. CLAIR and S. LIPOW (2001): Genetic conservation in applied tree breeding programs. In: Proceedings of the ITTO Conference on In Situ and Ex Situ Conservation of Commercial Tropical Trees, pp. 215-230. ITTO, Yokohama, Japan.]Search in Google Scholar
[JONES, T. H., D. A. STEANE, R. C. JONES, D. PILBEAM, R. E. VAILLANCOURT and B. N. POTTS (2006): Effects of domestication on genetic diversity in Eucalyptus globules. For Ecol Manage 234: 78-84.10.1016/j.foreco.2006.06.021]Search in Google Scholar
[KARHU, A., C. VOGL, G. F. MORAN, J. C. BELL and O. SAVOLAINEN (2006): Analysis of microsatellite variation in Pinus radiata reveals effects of genetic drift but no recent bottlenecks. J Evol Bio 19: 167-175.10.1111/j.1420-9101.2005.00982.x16405588]Search in Google Scholar
[KREMER, A., V. LE CORRE and S. MARIETTE (2000): Population differentiation for adaptive traits and their underlying loci in forest trees: theoretical predictions and experimental results. In: MATYAS, C. (Ed.), Forest Genetics and Sustainability. For Sci 63: 59-74.]Search in Google Scholar
[KRUTOVSKY, K. V. and D. B. NEALE (2005): Nucleotide diversity and linkage disequilibrium in cold-hardinessand wood quality-related candidate genes in Douglas fir. Genet 171: 2029-2041.10.1534/genetics.105.044420145612316157674]Search in Google Scholar
[KUMAR, S., K. J. S. JAYAWICKRAMA, J. LEE and M. LAUSBERG (2002): Direct and indirect measures of stiffness and strength show high heritability in a wind-pollinated radiata pine progeny test in New Zealand. Silvae Genet 51: 256-261.]Search in Google Scholar
[LANDE, R. (1995): Mutation and conservation. Conserv Bio 9: 782-791.10.1046/j.1523-1739.1995.09040782.x]Search in Google Scholar
[LATTA, R. G. (1998): Differentiation of allelic frequencies at quantitative trait loci affecting locally adaptive traits. Am Nat 151: 283-292.10.1086/28611918811359]Search in Google Scholar
[LEFEVRE, F. (2004): Human impacts on forest genetic resources in the temperate zone: an updated review. Forest Ecol Manage 197: 257-271.10.1016/j.foreco.2004.05.017]Search in Google Scholar
[LOVELESS, M. D. and J. L. HAMRICK (1984): Ecological determinants of genetic structure in plant populations. Annu Rev Ecol Syst 15: 65-95.10.1146/annurev.es.15.110184.000433]Search in Google Scholar
[LYNCH, M. (1995): A quantitative-genetic perspective on conservation issues. In: J. C. AVISE and J. L. HAMRICK (eds). Conservation genetics: case histories from nature. New York: Chapman& Hall: 471-501.]Search in Google Scholar
[LYNCH, M. and B. WALSH (1998): Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA, USA.]Search in Google Scholar
[MAF (2011): A National Exotic Forest Description as at 1 April 2011. Ministry of Agriculture and Forestry, Wellington, p. 64.]Search in Google Scholar
[MORAN, G. and C. BELL (1987): The origin and genetic diversity of Pinus radiata in Australia. Theo App Genet 73: 616-622.10.1007/BF0028920324241122]Search in Google Scholar
[MORRELL, P. L. and M. T. CLEGG (2007): Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. Proc Natl Acad Sci USA. 2007; 104: 3289-3294.10.1073/pnas.0611377104180559717360640]Search in Google Scholar
[NAEEM, R., L. DAHLEEN and B. MIRZA (2011): Genetic differentiation and geographical relationship of Asian barley landraces using SSRs. Genet Mol Bio: 34: 268-273.10.1590/S1415-47572011005000014]Search in Google Scholar
[NAMKOONG, G. H., C. KANG and J. S. BROUARD (1988): Tree Breeding: Principles and Strategies. Springer-Verlag, New York, NY, USA.10.1007/978-1-4612-3892-8]Search in Google Scholar
[NAMKOONG, G., M. P. KOSHY and S. N. AITKEN (2000): Selection. In: A. YOUNG, D. BOSHIER, and T. BOYLE, eds. Forest Conservation Genetics: Principles and Practices, pp. 101-111. CABI Publishing, Wallingford, UK.10.1079/9780851995045.0101]Search in Google Scholar
[NAMROUD, M. C., J. BOUSQUET, T. DOERKSEN and J. BEAULIEU (2012): Scanning SNPs from a large set of expressed genes to assess the impact of artificial selection on the undomesticated genetic diversity of white spruce. Evol App 5: 641-656.10.1111/j.1752-4571.2012.00242.x346114623028404]Search in Google Scholar
[NEI, M. (1978): Estimation of average heterozygosity and genetic distance from a small number of individuals. Genet 89: 583-590.10.1093/genetics/89.3.583121385517248844]Search in Google Scholar
[NEI, M., T. MARUYAMA and R. CHAKRABORTY (1975): The bottleneck effect and genetic variability in populations. Evol 29: 1-10.10.1111/j.1558-5646.1975.tb00807.x28563291]Search in Google Scholar
[NYBOM, H. (2004): Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Molecular Ecology 13: 1143-1155.10.1111/j.1365-294X.2004.02141.x15078452]Search in Google Scholar
[PEAKALL, R. and P. E. SMOUSE (2012): GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28: 2537-2539.10.1093/bioinformatics/bts460346324522820204]Search in Google Scholar
[PELGAS, B., J. BOUSQUET, P. G. MEIRMANS, K. RITLAND and N. ISABEL (2011): QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments. BMC Genomics 12: 145.10.1186/1471-2164-12-145306811221392393]Search in Google Scholar
[PFRENDER, M. E., K. SPITZE and J. HICKS (2000): Lack of concordance between genetic diversity estimates at the molecular and quantitative-trait levels. Conserv Genet 1: 263-269.10.1023/A:1011518125488]Search in Google Scholar
[POT, D., L. MCMILLAN, C. ECHT, G. L. PROVOST, P. GARNIER- GERE, S. CATO and C. PLOMION (2005): Nucleotide variation in genes involved in wood formation in two pine species. Tree Physio 167: 101-112.10.1111/j.1469-8137.2005.01417.x15948834]Search in Google Scholar
[PYHÄJÄRVI, T., M. ROSARIO GARCÍA-GIL, T. TIMO KNÜRR, M. MIKKONEN, W. WACHOWIAK and O. SAVOLAINEN (2007): Demographic history as influenced nucleotide diversity in European Pinus sylvestris populations. Genetics 177: 1713-1724.10.1534/genetics.107.077099214797818039881]Search in Google Scholar
[R DEVELOPMENT CORE TEAM (2007): R: A Language and Environment for Statistical Computing. r Foundation for Statistical Computing, Vienna, Austria.]Search in Google Scholar
[RAYMOND, C. A. and M. HENSON (2009): Genetic variation within the native provenances of Pinus radiata D. Don. 1. Growth and form to age 26 years. Silvae Genet 58: 242-252.10.1515/sg-2009-0031]Search in Google Scholar
[SAVOLAINEN, O. and T. PYHÄJÄRVI (2007): Genomic diversity in forest trees. Current Opinion Plant Biology 10: 162-167.10.1016/j.pbi.2007.01.011]Search in Google Scholar
[SHELBOURNE, C. J. A., R. D. BURDON, S. D. CARSON, A. FIRTH and T. G. VINCENT (1986): Development Plan for Radiata Pine Breeding. New Zealand Forest Service, FRI Special Publication.]Search in Google Scholar
[STOREY, J. D. and R. TIBSHIRANI (2003): Statistical significance for genome-wide studies. Proc Nat Acad Sci USA 100: 9440-9445.10.1073/pnas.1530509100]Search in Google Scholar
[SZMIDT, A. E. and O. MUONA (1985): Genetic effects of Scots pine (Pinus sylvestris L.) domestication. In: GREGORIUS, H. R. (ed) Population genetics in forestry. Springer, Berlin Heidelberg New York Tokyo, pp 241-252.10.1007/978-3-642-48125-3_16]Search in Google Scholar
[WATTERSON, G. A. (1975): On the number of segregating sites in genetical models without recombination. Theoret Pop Bio 7: 256-276.10.1016/0040-5809(75)90020-9]Search in Google Scholar
[WILCOX, P. L., T. E. RICHARDSON and S. D. CARSON (1997): Nature of quantitative trait variation in Pinus radiata: insights from QTL detection experiments. In: BURDON, R. D., MOORE, J. M. (eds) Proceedings of IUFRO ‘97: Genetics of radiata pine, Rotorua, December 1997. FRI Bull 203, pp. 304-312.]Search in Google Scholar
[WILLIAMS, C. G. and J. L. HAMRICK (1995): Genetic diversity levels in an advanced generation Pinus taeda L. program measured using molecular markers. Forest Gen Resources News 23: 45-50.]Search in Google Scholar
[WU, H. X., K. G. ELDRIDGE, A. C. MATHESON, M. B. POWELL and T. A. MCRAE (2007): Achievements in forest tree improvement in Australia and New Zealand: successful introduction and breeding of radiata pine to Australia. Aust For 70: 215-225.10.1080/00049158.2007.10675023]Search in Google Scholar
[YANCHUK, A. D. (2001): A quantitative framework for breeding and conservation of forest tree genetic resources in British Columbia. Can J For Res 31: 566-576.10.1139/x00-133]Search in Google Scholar