This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Azam, F. & Malfatti, F. (2007). Microbial structuring of marine ecosystems. Nat Rev Micro 5(10): 782-791. DOI: 10.1038/ nrmicro1747.AzamFMalfattiF2007Microbial structuring of marine ecosystems51078279110.1038/ nrmicro1747Open DOISearch in Google Scholar
Buchan, A., LeCleir, G.R., Gulvik, C.A. & González, J.M. (2014). Master recyclers: features and functions of bacteria associated with phytoplankton blooms. Nat. Rev. Microbiol. 12(10): 686-698. DOI: 10.1038/nrmicro3326.BuchanALeCleirG.RGulvikC.AGonzálezJ.M2014Master recyclers: features and functions of bacteria associated with phytoplankton blooms121068669810.1038/nrmicro332625134618Open DOISearch in Google Scholar
Campbell, B.J. & Kirchman, D.L. (2013). Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient. The ISME journal 7(1): 210-220. DOI: 10.1038/ismej.2012.93.CampbellB.JKirchmanD.L2013Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient7121022010.1038/ismej.2012.93352618122895159Open DOISearch in Google Scholar
Chen, B., Wang, J., Tang, J. & Wen, S. (2002). Prediction to trend of nutrient status in Meizhou Bay, Fujian. Mar. Biol. J. Oceanogr. in Taiwan Strait/Taiwan Haixia. Xiamen 21(3): 322-327ChenBWangJTangJWenS2002Prediction to trend of nutrient status in Meizhou Bay, Fujian213322327Search in Google Scholar
Cotter, P.D. & Hill, C. (2003). Surviving the acid test: responses of gram-positive bacteria to low pH. Microbiol. Mol. Biol. Rev. 67(3): 429-453. DOI: 10.1128/MMBR.67.3.429-453.2003.CotterP.DHillC2003Surviving the acid test: responses of gram-positive bacteria to low pH67342945310.1128/MMBR.67.3.429-453.200319386812966143Open DOISearch in Google Scholar
Crump, B.C., Kling, G.W., Bahr, M. & Hobbie, J.E. (2003). Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl. Environ. Microbiol. 69(4): 2253-2268. DOI: 10.1128/ AEM.69.4.2253-2268.2003.CrumpB.CKlingG.WBahrMHobbieJ.E2003Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source6942253226810.1128/ AEM.69.4.2253-2268.2003Open DOISearch in Google Scholar
Del Giorgio, P.A. & Cole, J.J. (1998). Bacterial growth efficiency in natural aquatic systems. Annu. Rev. Ecol. Syst. 503-541.Del GiorgioP.AColeJ.J1998Bacterial growth efficiency in natural aquatic systems50354110.1146/annurev.ecolsys.29.1.503Search in Google Scholar
Dubois, J., Hill, S., England, L, Edge, T., Masson, L et al. (2004). The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products. J. Microbiol. Methods 58(2): 251-262. DOI: 10.1016/j.mimet.2004.04.011.DuboisJHillSEnglandLEdgeTMassonL2004The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products58225126210.1016/j.mimet.2004.04.01115234523Open DOISearch in Google Scholar
Ederington, M.C., McManus, G.B. & Harvey, H.R. (1995). Trophic transfer of fatty acids, sterols, and a triterpenoid alcohol between bacteria, a ciliate, and the copepod Acartia tonsa. Limnol. Oceanogr. 40(5): 860-867. DOI: 10.4319/ lo.1995.40.5.0860.EderingtonM.CMcManusG.BHarveyH.R1995Trophic transfer of fatty acids, sterols, and a triterpenoid alcohol between bacteria, a ciliate, and the copepod40586086710.4319/ lo.1995.40.5.0860Open DOISearch in Google Scholar
Eiler, A., Langenheder, S., Bertilsson, S. & Tranvik, L.J. (2003). Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl. Environ. Microbiol. 69(7): 3701-3709. DOI: 10.1128/AEM.69.7.3701-3709.2003.EilerALangenhederSBertilssonSTranvikL.J2003Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations6973701370910.1128/AEM.69.7.3701-3709.200316518412839735Open DOISearch in Google Scholar
Elser, J.J., Stabler, L.B. & Hassett, R.P. (1995). Nutrient limitation of bacterial growth and rates of bacterivory in lakes and oceans: a comparative study. Aquat. Microb. Ecol. 9(2): 105-110. DOI: 10.3354/ame009105.ElserJ.JStablerL.BHassettR.P1995Nutrient limitation of bacterial growth and rates of bacterivory in lakes and oceans: a comparative study9210511010.3354/ame009105Open DOISearch in Google Scholar
Falkowski, P.G. & Raven, J.A. (2007). Aquatic photosynthesis: Princeton University Press.FalkowskiP.GRavenJ.A2007Princeton University Press10.1515/9781400849727Search in Google Scholar
Ferrari, V. & Hollibaugh, J. (1999). Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: analysis of a large data set. Hydrobiologia 401: 55-68. DOI: 10.1023/A:1003773907789.FerrariVHollibaughJ1999Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: analysis of a large data set401556810.1023/A:1003773907789Open DOISearch in Google Scholar
Findlay, S.E. (2005). Increased carbon transport in the Hudson River: unexpected consequence of nitrogen deposition? Front. Ecol. Environ. 3(3): 133-137. DOI: 10.1890/1540-9295(2005)003[0133:ICTITH]2.0.CO;2.FindlayS.E2005Increased carbon transport in the Hudson River: unexpected consequence of nitrogen deposition?3313313710.1890/1540-9295(2005)003[0133:ICTITH]2.0.CO;2Open DOISearch in Google Scholar
Freeman, C, Evans, C, Monteith, D., Reynolds, B. & Fenner, N. (2001). Export of organic carbon from peat soils. Nature 412(6849): 785-785. DOI: 10.1038/35090628.FreemanCEvansCMonteithDReynoldsBFennerN2001Export of organic carbon from peat soils412684978578510.1038/35090628Open DOISearch in Google Scholar
Freeman, C, Fenner, N., Ostle, N., Kang, H., Dowrick, D. et al. (2004). Export of dissolved organic carbon from peatlands under elevated carbon dioxide levels. Nature 430(6996): 195-198. DOI: 10.1038/nature02707.FreemanCFennerNOstleNKangHDowrickD2004Export of dissolved organic carbon from peatlands under elevated carbon dioxide levels430699619519810.1038/nature02707Open DOISearch in Google Scholar
Fuhrman J. (1992). Bacterioplankton roles in cycling of organic matter: the microbial food web. In Primary productivity and biogeochemical cycles in the sea. Springer.FuhrmanJ1992Bacterioplankton roles in cycling of organic matter: the microbial food webSpringer10.1007/978-1-4899-0762-2_20Search in Google Scholar
Garnett, M., Ineson, P. & Stevenson, A. (2000). Effects of burning and grazing on carbon sequestration in a Pennine blanket bog, UK. The Holocene 10(6): 729-736. DOI: 10.1191/09596830094971.GarnettMInesonPStevensonA2000Effects of burning and grazing on carbon sequestration in a Pennine blanket bog, UK10672973610.1191/09596830094971Open DOISearch in Google Scholar
Gonzalez, J.M., Sherr, E.B. & Sherr, B.F. (1990). Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates. Appl. Environ. Microbiol. 56(3): 583-589.GonzalezJ.MSherrE.BSherrB.F1990Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates56358358910.1128/aem.56.3.583-589.1990Search in Google Scholar
Kirchman, D. (1994). The uptake of inorganic nutrients by heterotrophic bacteria. Microb. Ecol. 28(2): 255-271. DOI: 10.1007/BF00166816.KirchmanD1994The uptake of inorganic nutrients by heterotrophic bacteria28225527110.1007/BF00166816Open DOISearch in Google Scholar
Kjelleberg, S. (1993). Starvation in bacteria. Springer.KjellebergS1993Springer10.1007/978-1-4899-2439-1Search in Google Scholar
Kuuppo-Leinikki, P. (1990). Protozoan grazing on planktonic bacteria and its impact on bacterial population. Mar. Ecol. Prog. Ser. 63(2): 227-238.Kuuppo-LeinikkiP1990Protozoan grazing on planktonic bacteria and its impact on bacterial population63222723810.3354/meps063227Search in Google Scholar
Larsson, U. & Hagström, A. (1979). Phytoplankton exudate release as an energy source for the growth of pelagic bacteria. Mar. Biol. 52(3): 199-206. DOI: 10.1007/ BF00398133.LarssonUHagströmA1979Phytoplankton exudate release as an energy source for the growth of pelagic bacteria52319920610.1007/ BF00398133Open DOISearch in Google Scholar
Maas, E.W., Law, CS., Hall, J.A., Pickmere, S., Currie, K.I. et al. (2013). Effect of ocean acidification on bacterial abundance, activity and diversity in the Ross Sea, Antarctica. Aquat Microb. Ecol. 70(1): 1-15. DOI: 10.3354/ ame01633.MaasE.WLawC.SHallJ.APickmereSCurrieK.I2013Effect of ocean acidification on bacterial abundance, activity and diversity in the Ross Sea, Antarctica70111510.3354/ame01633Open DOISearch in Google Scholar
Morrow, K., Paul, V., Liles, M. & Chadwick, N. (2011). Allelochemicals produced by Caribbean macroalgae and cyanobacteria have species-specific effects on reef coral microorganisms. Coral Reefs 30(2): 309-320. DOI: 10.1007/ s00338-011-0747-1.MorrowKPaulVLilesMChadwickN2011Allelochemicals produced by Caribbean macroalgae and cyanobacteria have species-specific effects on reef coral microorganisms30230932010.1007/ s00338-011-0747-1Open DOISearch in Google Scholar
Muyzer, G., Teske, A., Wirsen, CO. & Jannasch, H.W. (1995). Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164(3): 165-172. DOI: 10.1007/BF02529967.MuyzerGTeskeAWirsenC.OJannaschH.W1995Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments164316517210.1007/BF025299677545384Open DOISearch in Google Scholar
Nester, E.W. (2001). Microbiology: a human perspective. McGraw-Hill.NesterE.W2001McGraw-HillSearch in Google Scholar
Ogawa, H. & Tanoue, E. (2003). Dissolved organic matter in oceanic waters. J. Oceanogr. 59(2): 129-147. DOI: 10.1023/A:1025528919771.OgawaHTanoueE2003Dissolved organic matter in oceanic waters59212914710.1023/A:1025528919771Open DOISearch in Google Scholar
Park, B.S., Wang, P., Kim, J.H., Kim, J.-H., Gobler, C.J. et al. (2014). Resolving the intra-specific succession within Cochlodinium polykrikoides populations in southern Korean coastal waters via use of quantitative PCR assays. Harmful Algae 37: 133-141. DOI: 10.1016/j.hal.2014.04.019.ParkB.SWangPKimJ.HKimJ-H.GoblerC.J2014Resolving the intra-specific succession within Cochlodinium polykrikoides populations in southern Korean coastal waters via use of quantitative PCR assays3713314110.1016/j.hal.2014.04.019Open DOISearch in Google Scholar
Park, N., Kim, J.H. & Cho, J. (2008). Organic matter, anion, and metal wastewater treatment in Damyang surface-flow constructed wetlands in Korea. Ecol. Eng. 32(1): 68-71.ParkNKimJ.HChoJ2008Organic matter, anion, and metal wastewater treatment in Damyang surface-flow constructed wetlands in Korea321687110.1016/j.ecoleng.2007.09.003Search in Google Scholar
Park, S., Park, G., Seok, K., Oh, H., Lee, Y. et al. (1999). Spatio temporal variation of water quality and eutrophication in the Kyunggi Bay of Yellow Sea, Korea. Bull. Nat. 1: 189-204.ParkSParkGSeokKOhHLeeY1999Spatio temporal variation of water quality and eutrophication in the Kyunggi Bay of Yellow Sea, Korea1189204Search in Google Scholar
Pomeroy, L.R. & Wiebe, W.J. (2001). Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria. Aquat. Microb. Ecol. 23(2): 187-204. DOI: 10.3354/ ame023187.PomeroyL.RWiebeW.J2001Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria23218720410.3354/ ame023187Open DOISearch in Google Scholar
Porter, K. & Feig, Y (1980). The use of DAPI for identification and enumeration of bacteria and blue-green algae. Limnol. Oceanogr. 25: 943-948.PorterKFeigY1980The use of DAPI for identification and enumeration of bacteria and blue-green algae2594394810.4319/lo.1980.25.5.0943Search in Google Scholar
Ratkowsky, D., Olley, J., McMeekin, T. & Ball, A. (1982). Relationship between temperature and growth rate of bacterial cultures. J. Bacteriol. 149(1): 1-5.RatkowskyDOlleyJMcMeekinTBallA1982Relationship between temperature and growth rate of bacterial cultures14911510.1128/jb.149.1.1-5.1982Search in Google Scholar
Redfield, AC. (1958). The biological control of chemical factors in the environment. Am. Sci. 205-221.RedfieldA.C1958The biological control of chemical factors in the environment20522110.1515/9783112312308-007Search in Google Scholar
Roh, S.W., Abell, G.C, Kim, K.-H., Nam, Y.-D. & Bae, J.-W. (2010). Comparing microarrays and next-generation sequencing technologies for microbial ecology research. Trends Biotechnol. 28(6): 291-299. DOI: 10.1016/j.tibtech.2010.03.001.RohS.WAbellG.CKimK.-H.NamY.-D.BaeJ.-W.2010Comparing microarrays and next-generation sequencing technologies for microbial ecology research28629129910.1016/j.tibtech.2010.03.001Open DOISearch in Google Scholar
Samarajeewa, A., Hammad, A., Masson, L., Khan, I., Scroggins, R. et al. (2015). Comparative assessment of next-generation sequencing, denaturing gradient gel electrophoresis, clonal restriction fragment length polymorphism and cloning-sequencing as methods for characterizing commercial microbial consortia. J. Microbiol. Methods 108: 103-111. DOI: 10.1016/j.mimet.2014.11.013.SamarajeewaAHammadAMassonLKhanIScrogginsR2015Comparative assessment of next-generation sequencing, denaturing gradient gel electrophoresis, clonal restriction fragment length polymorphism and cloning-sequencing as methods for characterizing commercial microbial consortia10810311110.1016/j.mimet.2014.11.013Open DOISearch in Google Scholar
Schimel, D.S. (1995). Terrestrial ecosystems and the carbon cycle. Global Change Biol. 1(1): 77-91. DOI: 10.1111/j.1365- 2486.1995.tb00008.x.SchimelD.S1995Terrestrial ecosystems and the carbon cycle11779110.1111/j.1365- 2486.1995.tb00008.xOpen DOISearch in Google Scholar
Schneider, B. & Schmittner, A. (2006). Simulating the impact of the Panamanian seaway closure on ocean circulation, marine productivity and nutrient cycling. Earth Planet Sci. Lett. 246(3), 367-380. DOI: 10.1016/j.epsl.2006.04.028.SchneiderBSchmittnerA2006Simulating the impact of the Panamanian seaway closure on ocean circulation, marine productivity and nutrient cycling246336738010.1016/j.epsl.2006.04.028Open DOISearch in Google Scholar
Smith, J.E., Shaw, M., Edwards, R.A., Obura, D., Pantos, O. et al. (2006). Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality. Ecol. Lett. 9(7): 835-845. DOI: 10.1111/j.1461-0248.2006.00937.x.SmithJ.EShawMEdwardsR.AOburaDPantosO2006Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality9783584510.1111/j.1461-0248.2006.00937.xOpen DOISearch in Google Scholar
Smith, R., Gosselin, M., Kudoh, S., Robineau, B. & Taguchi, S. (1997). DOC and its relationship to algae in bottom ice communities. J. Mar. Syst. 11(1): 71-80. DOI: 10.1016/ S0924-7963(96)00029-2.SmithRGosselinMKudohSRobineauBTaguchiS1997DOC and its relationship to algae in bottom ice communities111718010.1016/ S0924-7963(96)00029-2Open DOISearch in Google Scholar
Song, M.-Y., Sohn, M.-H., Im, Y.-J., Kim, J.-B., Kim, H.-Y. et al. (2008). Seasonal variation in the species composition of bag-net catch from the coastal waters of incheon, Korea. Korean Journal of Fisheries and Aquatic Sciences 41(4): 272- 281. DOI: 10.5657/kfas.2008.41.4.272.SongM.-Y.SohnM.-H.ImY.-J.KimJ.-B.KimH.-Y.2008Seasonal variation in the species composition of bag-net catch from the coastal waters of incheon, Korea41427228110.5657/kfas.2008.41.4.272Open DOISearch in Google Scholar
Strickland, J.D.H. & Parsons, T.R. (1972). A practical handbookof seawater analysis. Ottawa, Canada: Fisheries Research Board of Canada.StricklandJ.D.H.ParsonsT.R1972Ottawa, CanadaFisheries Research Board of CanadaSearch in Google Scholar
Sundh, I. (1992). Biochemical composition of dissolved organic carbon derived from phytoplankton and used by heterotrophic bacteria. Appl. Environ. Microbiol. 58(9): 2938-2947.SundhI1992Biochemical composition of dissolved organic carbon derived from phytoplankton and used by heterotrophic bacteria5892938294710.1128/aem.58.9.2938-2947.199218303016348767Search in Google Scholar
Thornton, DC (2014). Dissolved organic matter (DOM) release by phytoplankton in the contemporary and future ocean. Eur. J. Phycol. 49(1): 20-46. DOI: 10.1080/09670262.2013.875596.ThorntonDC2014Dissolved organic matter (DOM) release by phytoplankton in the contemporary and future ocean491204610.1080/09670262.2013.875596Open DOISearch in Google Scholar
Tsai, A.Y, Gong, G.-C & Huang, Y.W. (2013). Variations of microbial loop carbon flux in western subtropical Pacific coastal water between warm and cold season. J. Exp. Mar. Biol. Ecol. 449, 111-117. DOI: 10.1016/j.jembe.2013.09.006.TsaiA.YGongG.-CHuangY.W2013Variations of microbial loop carbon flux in western subtropical Pacific coastal water between warm and cold season44911111710.1016/j.jembe.2013.09.006Open DOISearch in Google Scholar
Tyrrell, T. (1999). The relative influences of nitrogen and phosphorus on oceanic primary production. Nature 400(6744): 525-531. DOI: 10.1038/22941.TyrrellT1999The relative influences of nitrogen and phosphorus on oceanic primary production400674452553110.1038/22941Open DOISearch in Google Scholar
Verity, P. & Smetacek, V. (1996). Organism life cycles, predation, and the structure of marine pelagic ecosystems. Mar. Ecol. Prog. Ser. 130: 277-293.VerityPSmetacekV1996Organism life cycles, predation, and the structure of marine pelagic ecosystems13027729310.3354/meps130277Search in Google Scholar
Wang, H., Hill, R.T., Zheng, T., Hu, X. & Wang, B. (2016). Effects of bacterial communities on biofuel-producing microalgae: stimulation, inhibition and harvesting. Crit. Rev. Biotechnol. 36(2): 341-352. DOI: 10.3109/07388551.2014.961402.WangHHillR.TZhengTHuXWangB2016Effects of bacterial communities on biofuel-producing microalgae: stimulation, inhibition and harvesting36234135210.3109/07388551.2014.961402Open DOISearch in Google Scholar
Wang, P., Park, B.S., Kim, J.H., Kim, J.-H., Lee, H.-O. et al. (2014). Phylogenetic position of eight Amphora sensu lato (Bacillariophyceae) species and comparative analysis of morphological characteristics. Algae 29(2): 57-73. DOI: 10.4490/algae.2014.29.2.057.WangPParkB.SKimJ.HKimJ.-H.LeeH.-O.2014Phylogenetic position of eight Amphora sensu lato (Bacillariophyceae) species and comparative analysis of morphological characteristics292577310.4490/algae.2014.29.2.057Open DOISearch in Google Scholar
Watanabe, T., Asakawa, S., Nakamura, A., Nagaoka, K. & Kimura, M. (2004). DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol. Lett. 232(2): 153-163. DOI: 10.1016/S0378- 1097(04)00045-X.WatanabeTAsakawaSNakamuraANagaokaK.KimuraM2004DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil232215316310.1016/S0378- 1097(04)00045-XOpen DOISearch in Google Scholar
Whitman, W.B., Coleman, D.C. & Wiebe, W.J. (1998). Prokaryotes: the unseen majority. PNAS 95(12): 6578-6583.WhitmanW.BColemanD.CWiebeW.J1998Prokaryotes: the unseen majority95126578658310.1073/pnas.95.12.6578338639618454Search in Google Scholar
Worrall, F., Burt, T. & Shedden, R. (2003). Long term records of riverine dissolved organic matter. Biogeochemistry 64(2): 165-178.WorrallFBurtTSheddenR2003Long term records of riverine dissolved organic matter64216517810.1023/A:1024924216148Search in Google Scholar
Yoo, J.S. (2008). Productivity and abundance of bacteria and phytoplankton in Incheon Dock, western coast of Korea. J. Environ. Biol. 29: 531-534.YooJ.S2008Productivity and abundance of bacteria and phytoplankton in Incheon Dock, western coast of Korea29531534Search in Google Scholar
Yoon, B.I. & Woo, S.-B. (2013). Correlation between freshwater discharge and salinity intrusion in the Han River Estuary, South Korea. J. Coast. Res. 2(65): 1247. DOI: 10.2112/SI65- 211.1.YoonB.IWooS.-B.2013Correlation between freshwater discharge and salinity intrusion in the Han River Estuary, South Korea265124710.2112/SI65- 211.1Open DOISearch in Google Scholar