This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Ahmad F., I. Ahmad and M.S. Khan. 2008. Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiol. Res. 163: 173–181.AhmadF.I.AhmadM.S.Khan2008Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities16317318110.1016/j.micres.2006.04.001Search in Google Scholar
Akbar G., T.N. Khan, and M. Arshad. 1996. Cholistan Desert, Pakistan. Rangelands. 18.AkbarG.T.N.Khan, and M.Arshad1996Cholistan Desert, Pakistan18Search in Google Scholar
Alhassani H.A., M.A. Rauf and S.S. Ashraf. 2007. Efficient microbial degradation of Toluidine Blue dye by Brevibacillus sp. Dyes and Pigments 75: 395–400.AlhassaniH.A.M.A.RaufS.S.Ashraf2007Efficient microbial degradation of Toluidine Blue dye by Brevibacillus sp7539540010.1016/j.dyepig.2006.06.019Search in Google Scholar
Altschul S.F., W. Gish, W. Miller, E.W. Myers and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403–410.AltschulS.F.W.GishW.MillerE.W.MyersD.J.Lipman1990Basic local alignment search tool21540341010.1016/S0022-2836(05)80360-2Search in Google Scholar
Amoa-Awua W.K.A. and M. Jakobsen. 1995. The role of Bacillus species in the fermentation of cassava. J. Appl. Bacteriol. 79: 250–256.Amoa-AwuaW.K.A.M.Jakobsen1995The role of Bacillus species in the fermentation of cassava7925025610.1111/j.1365-2672.1995.tb03134.xSearch in Google Scholar
Arshad M., G. Akbar and S. Rashid. 2002. Wealth of medicinal plants of Cholistan desert, Pakistan, conservational strategies. Hamdard Medicus. XLV:25–34.ArshadM.G.AkbarS.Rashid2002Wealth of medicinal plants of Cholistan desert, Pakistan, conservational strategiesXLV2534Search in Google Scholar
Arya R. and A.K. Sharma. 2014. Screening, isolation and characterization of Brevibacillus borstelensis for the bioremediation of carbendazim. J. Environ. Sci. Sustain. 2: 12–14.AryaR.A.K.Sharma2014Screening, isolation and characterization of Brevibacillus borstelensis for the bioremediation of carbendazim21214Search in Google Scholar
Cappuccino J. and N. Sherman. 1999. Microbiology – A laboratory manual. Harlow: Benjamin.CappuccinoJ.N.Sherman1999HarlowBenjaminSearch in Google Scholar
Cheng Z., E. Park and B.R. Glick. 2007. 1-Aminocyclopropane-1-carboxylate deaminase from Pseudomonas putida UW4 facilitates the growth of canola in the presence of salt. Can. J. Microbiol. 53: 912–918.ChengZ.E.ParkB.R.Glick20071-Aminocyclopropane-1-carboxylate deaminase from Pseudomonas putida UW4 facilitates the growth of canola in the presence of salt5391291810.1139/W07-05017898846Search in Google Scholar
Daubin V., N.A. Moran and H. Ochman. 2003. Phylogenetics and the cohesion of bacterial genomes. Science 301: 829–832.DaubinV.N.A.MoranH.Ochman2003Phylogenetics and the cohesion of bacterial genomes30182983210.1126/science.108656812907801Search in Google Scholar
Dec M., A. Puchalski, R. Urban-Chmiel and A. Wernicki. 2016. 16S-ARDRA and MALDI-TOF mass spectrometry as tools for identification of Lactobacillus bacteria isolated from poultry. BMC Microbiology 16: 105.DecM.A.PuchalskiR.Urban-ChmielA.Wernicki201616S-ARDRA and MALDI-TOF mass spectrometry as tools for identification of Lactobacillus bacteria isolated from poultry1610510.1186/s12866-016-0732-5490659927296852Search in Google Scholar
Duim B., P.A.R. Vandamme, A. Rigter, S. Laevens, J.R. Dijkstra and J.A. Wagenaar. 2001. Differentiation of Campylobacter species by AFLP fingerprinting. Microbiology 147: 2729–2737.DuimB.P.A.R.VandammeA.RigterS.LaevensJ.R.DijkstraJ.A.Wagenaar2001Differentiation of Campylobacter species by AFLP fingerprinting1472729273710.1099/00221287-147-10-272911577152Search in Google Scholar
Esikova T.Z., Y.V. Temirov, S.L. Sokolov and Y.B. Alakhov. 2002. Secondary antimicrobial metabolites produced by thermophilic Bacillus spp. strains VK2 and VK21. Appl. Biochem. Microbiol. 38: 226–231.EsikovaT.Z.Y.V.TemirovS.L.SokolovY.B.Alakhov2002Secondary antimicrobial metabolites produced by thermophilic Bacillus spp. strains VK2 and VK213822623110.1023/A:1015463122840Search in Google Scholar
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39: 783–791.FelsensteinJ.1985Confidence limits on phylogenies: an approach using the bootstrap3978379110.1111/j.1558-5646.1985.tb00420.x28561359Search in Google Scholar
Hameed M., M. Ashraf, F. Al-Quiany, T. Nawaz, M. Ahmad, A. Younis and N. Naz. 2011. Medicinal flora of the Cholistan desert: A review. Pak. J. Bot. 43: 39–50.HameedM.M.AshrafF.Al-QuianyT.NawazM.AhmadA.YounisN.Naz2011Medicinal flora of the Cholistan desert: A review433950Search in Google Scholar
Hartmann A., M. Rothballer and M. Schmid. 2008. Lorenz Hiltner, a pioneer in rhizosphere microbial ecology and soil bacteriology research. Plant and Soil. 312: 7–14.HartmannA.M.RothballerM.Schmid2008Lorenz Hiltner, a pioneer in rhizosphere microbial ecology and soil bacteriology research31271410.1007/s11104-007-9514-zSearch in Google Scholar
Hayat R., S. Ali, U. Amara, R. Khalid and I. Ahmed. 2010. Soil beneficial bacteria and their role in plant growth promotion: a review. Ann. Microbiol. 60: 579–598.HayatR.S.AliU.AmaraR.KhalidI.Ahmed2010Soil beneficial bacteria and their role in plant growth promotion: a review6057959810.1007/s13213-010-0117-1Search in Google Scholar
Head I.M., J.R. Saunders and R.W. Pickup. 1998. Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms. Microb. Ecol. 35: 1–21.HeadI.M.J.R.SaundersR.W.Pickup1998Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms3512110.1007/s0024899000569459655Search in Google Scholar
Huang B., C. Lv, P. Zhuang, H. Zhang and L. Fan. 2011. Endophytic colonisation of Bacillus subtilis in the roots of Robinia pseudoacacia L. Plant Biol. 13: 925–931.HuangB.C.LvP.ZhuangH.ZhangL.Fan2011Endophytic colonisation of Bacillus subtilis in the roots of Robinia pseudoacacia L1392593110.1111/j.1438-8677.2011.00456.x21972966Search in Google Scholar
Hugenholtz P., B.M. Goebel and N.R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: 4765–4774.HugenholtzP.B.M.GoebelN.R.Pace1998Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity1804765477410.1128/JB.180.18.4765-4774.19981074989733676Search in Google Scholar
Jamil S., S.A. Pirzad, M.K. Alam, H.M. Wariss, R. Qureshi, K.A. Ansari and S.A. Sheikh. 2013. Seed morphometry of some grasses and sedges from Cholistan desert, Pakistan. Arch. Des. Sci. J. 66: 128–133.JamilS.S.A.PirzadM.K.AlamH.M.WarissR.QureshiK.A.AnsariS.A.Sheikh2013Seed morphometry of some grasses and sedges from Cholistan desert, Pakistan66128133Search in Google Scholar
Kloepper J.W., A. Gutiérrez-Estrada and J.A. McInroy. 2007. Photoperiod regulates elicitation of growth promotion but not induced resistance by plant growth-promoting rhizobacteria. Can. J. Microbiol. 53: 159–167.KloepperJ.W.A.Gutiérrez-EstradaJ.A.McInroy2007Photoperiod regulates elicitation of growth promotion but not induced resistance by plant growth-promoting rhizobacteria5315916710.1139/w06-11417496963Search in Google Scholar
Kloepper J.W., C.M. Ryu and S. Zhang. 2004. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathol. 94: 1259–1266.KloepperJ.W.C.M.RyuS.Zhang2004Induced systemic resistance and promotion of plant growth by Bacillus spp941259126610.1094/PHYTO.2004.94.11.125918944464Search in Google Scholar
Kumar A., A. Kumar, S. Devi, S. Patil, C. Payal and S. Negi. 2012. Isolation, screening and characterization of bacteria from rhizospheric soils for different plant growth promotion (PGP) activities: an in vitro study. Rec. Res. Sci. Tech. 4: 1–5.KumarA.A.KumarS.DeviS.PatilC.PayalS.Negi2012Isolation, screening and characterization of bacteria from rhizospheric soils for different plant growth promotion (PGP) activities: an in vitro study415Search in Google Scholar
Kumar S., G. Stecher and K. Tamura. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol. Biol. Evol.KumarS.G.StecherK.Tamura2016MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets10.1093/molbev/msw054821082327004904Search in Google Scholar
Larsen N., L. Thorsen, E.N. Kpikpi, B. Stuer-Lauridsen and M.D. Cantor, Nielsen B, Brockmann E, P.M. Derkx and L. Jespersen. 2014. Characterization of Bacillus spp. strains for use as probiotic additives in pig feed. Appl. Microbiol. Biotechnol. 98: 1105–1118.LarsenN.L.ThorsenE.N.KpikpiB.Stuer-LauridsenM.D.CantorNielsenBBrockmannEP.M.DerkxL.Jespersen2014Characterization of Bacillus spp. strains for use as probiotic additives in pig feed981105111810.1007/s00253-013-5343-624201893Search in Google Scholar
Lim J.-H. and S.-D. Kim. 2009. Synergistic plant growth promotion by the indigenous auxins-producing PGPR Bacillus subtilis AH18 and Bacillus licheniforims K11. J. Korean Soc. Appl. Biol. Chem. 52: 531–538.LimJ.-H.S.-D.Kim2009Synergistic plant growth promotion by the indigenous auxins-producing PGPR Bacillus subtilis AH18 and Bacillus licheniforims K115253153810.3839/jksabc.2009.090Search in Google Scholar
Lim J.-H. and S.-D. Kim. 2013. Induction of drought stress resistance by multi-functional PGPR Bacillus licheniformis K11 in pepper. The Plant Pathol. J. 29: 201–208.LimJ.-H.S.-D.Kim2013Induction of drought stress resistance by multi-functional PGPR Bacillus licheniformis K11 in pepper2920120810.5423/PPJ.SI.02.2013.0021417477425288947Search in Google Scholar
Lugtenberg B. and F. Kamilova. 2009. Plant-growth-promoting Rhizobacteria. Ann. Rev. Microbiol. 63: 541–556.LugtenbergB.F.Kamilova2009Plant-growth-promoting Rhizobacteria6354155610.1146/annurev.micro.62.081307.16291819575558Search in Google Scholar
Lugtenberg B.J.J., L. Dekkers and G.V. Bloemberg. 2001. Molecular determinants of rhizosphere colonization by Pseudomonas. Ann. Rev. Phytopathol. 39: 461–490.LugtenbergB.J.J.L.DekkersG.V.Bloemberg2001Molecular determinants of rhizosphere colonization by Pseudomonas3946149010.1146/annurev.phyto.39.1.46111701873Search in Google Scholar
Mallick I., S.T. Hossain, S. Sinha and S.K. Mukherjee. 2014. Brevibacillus sp. KUMAs2, a bacterial isolate for possible bioremediation of arsenic in rhizosphere. Ecotoxicol. Environ. Saf. 107: 236–244.MallickI.S.T.HossainS.SinhaS.K.Mukherjee2014Brevibacillus sp. KUMAs2, a bacterial isolate for possible bioremediation of arsenic in rhizosphere10723624410.1016/j.ecoenv.2014.06.00725011120Search in Google Scholar
Morgan F.J. and F.G. Priest. 1981. Characterization of a thermostable α-amylase from Bacillus licheniformis NCIB 6346. J. Appl. Bacteriol. 50: 104–114.MorganF.J.F.G.Priest1981Characterization of a thermostable α-amylase from Bacillus licheniformis NCIB 63465010411410.1111/j.1365-2672.1981.tb00875.xSearch in Google Scholar
Muhammad S.A., S. Ahmad and A. Hameed. 2009. Report: antibiotic production by thermophilic Bacillus specie SAT-4. Pak. J. Pharm. Sci. 22: 339–345.MuhammadS.A.S.AhmadA.Hameed2009Report: antibiotic production by thermophilic Bacillus specie SAT-422339345Search in Google Scholar
Nei M. and S. Kumar. 2000. Molecular Evolution and Phylogenetics. Oxford University Press, New York. 352 pp.NeiM.S.Kumar2000Oxford University PressNew York352ppSearch in Google Scholar
Ouoba L.I., M.D. Cantor, B. Diawara, A.S. Traoré and M. Jakobsen. 2003a. Degradation of African locust bean oil by Bacillus subtilis and Bacillus pumilus isolated from soumbala, a fermented African locust bean condiment. J. Appl. Microbiol. 95: 868–873.OuobaL.I.M.D.CantorB.DiawaraA.S.TraoréM.Jakobsen2003aDegradation of African locust bean oil by Bacillus subtilis and Bacillus pumilus isolated from soumbala, a fermented African locust bean condiment9586887310.1046/j.1365-2672.2003.02063.x12969303Search in Google Scholar
Ouoba L.I., K.B. Rechinger, V. Barkholt, B. Diawara, A.S. Traore and M. Jakobsen. 2003b. Degradation of proteins during the fermentation of African locust bean (Parkia biglobosa) by strains of Bacillus subtilis and Bacillus pumilus for production of Soumbala. J. Appl. Microbiol. 94: 396–402.OuobaL.I.K.B.RechingerV.BarkholtB.DiawaraA.S.TraoreM.Jakobsen2003bDegradation of proteins during the fermentation of African locust bean (Parkia biglobosa) by strains of Bacillus subtilis and Bacillus pumilus for production of Soumbala9439640210.1046/j.1365-2672.2003.01845.x12588548Search in Google Scholar
Ouoba L.I.I., M.D. Cantor, B. Diawara, A.S. Traoré and M. Jakobsen. 2003c. Degradation of African locust bean oil by Bacillus subtilis and Bacillus pumilus isolated from soumbala, a fermented African locust bean condiment. J. Appl. Microbiol. 95: 868–873.OuobaL.I.I.M.D.CantorB.DiawaraA.S.TraoréM.Jakobsen2003cDegradation of African locust bean oil by Bacillus subtilis and Bacillus pumilus isolated from soumbala, a fermented African locust bean condiment9586887310.1046/j.1365-2672.2003.02063.xSearch in Google Scholar
Ouoba L.I.I., B. Diawara, T. Christensen, J.D. Mikkelsen and M. Jakobsen. 2007. Degradation of polysaccharides and non-digestible oligosaccharides by Bacillus subtilis and Bacillus pumilus isolated from Soumbala, a fermented African locust bean (Parkia biglobosa) food Condiment. Eur. Food Res. Tech. 224: 689–694.OuobaL.I.I.B.DiawaraT.ChristensenJ.D.MikkelsenM.Jakobsen2007Degradation of polysaccharides and non-digestible oligosaccharides by Bacillus subtilis and Bacillus pumilus isolated from Soumbala, a fermented African locust bean (Parkia biglobosa) food Condiment22468969410.1007/s00217-006-0359-0Search in Google Scholar
Pontes D.S., C.I. Lima-Bittencourt, E. Chartone-Souza and A.M. Amaral Nascimento. 2007. Molecular approaches: advantages and artifacts in assessing bacterial diversity. J. Industr. Microbiol. Biotechnol. 34: 463–473.PontesD.S.C.I.Lima-BittencourtE.Chartone-SouzaA.M.Amaral Nascimento2007Molecular approaches: advantages and artifacts in assessing bacterial diversity3446347310.1007/s10295-007-0219-317476541Search in Google Scholar
Porteous L. and J. Armstrong. 1993. A simple mini-method to extract DNA directly from soil for use with polymerase chain reaction amplification. Curr. Microbiol. 27: 115–118.PorteousL.J.Armstrong1993A simple mini-method to extract DNA directly from soil for use with polymerase chain reaction amplification2711511810.1007/BF01570868Search in Google Scholar
Reiss R., J. Ihssen and L. Thöny-Meyer. 2011. Bacillus pumilus laccase: A heat stable enzyme with a wide substrate spectrum. BMC Biotechnol. 11: 2–11.ReissR.J.IhssenL.Thöny-Meyer2011Bacillus pumilus laccase: A heat stable enzyme with a wide substrate spectrum1121110.1186/1472-6750-11-9Search in Google Scholar
Saitou N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol. Evol. 4: 406–425.SaitouN.M.Nei1987The neighbor-joining method: a new method for reconstructing phylogenetic trees4406425Search in Google Scholar
Saleem N.H., V.A. Ferro, A.M. Simpson, J. Igoli, A.I. Gray and R.M. Drummond. 2013. The inhibitory effect of Haloxylon salicornicum on contraction of the mouse uterus. Evid. Based Complement. Alternat. Med. 2013: 714075SaleemN.H.V.A.FerroA.M.SimpsonJ.IgoliA.I.GrayR.M.Drummond2013The inhibitory effect of Haloxylon salicornicum on contraction of the mouse uterus201371407510.1155/2013/714075Search in Google Scholar
Salkinoja-Salonen M.S., R. Vuorio, M.A. Andersson, P. Kampfer, M.C. Andersson, T. Honkanen-Buzalski and A.C. Scoging. 1999. Toxigenic strains of Bacillus licheniformis related to food poisoning. 65:4637–4645. Appl. Environ. Microbiol. 65: 4637–4645.Salkinoja-SalonenM.S.R.VuorioM.A.AnderssonP.KampferM.C.AnderssonT.Honkanen-BuzalskiA.C.Scoging1999Toxigenic strains of Bacillus licheniformis related to food poisoning. 65:4637–4645654637464510.1128/AEM.65.10.4637-4645.1999Search in Google Scholar
Shafi P.M., M.K. Rosamma, K. Jamil and P.S. Reddy. 2002. Antibacterial activity of Syzygium cumini and Syzygium travancoricum leaf essential oils. Fitoterapia. 73: 414–416.ShafiP.M.M.K.RosammaK.JamilP.S.Reddy2002Antibacterial activity of Syzygium cumini and Syzygium travancoricum leaf essential oils7341441610.1016/S0367-326X(02)00131-4Search in Google Scholar
Shankarrao K.O., K.T. Angadrao and D.K. Vasudha. 2014. Partial identification of antimicrobial compound produced by thermotolerant Bacillus subtilis KFSB5 isolated from compost soil. Res. J. Biotechnol. 9: 23–28.ShankarraoK.O.K.T.AngadraoD.K.Vasudha2014Partial identification of antimicrobial compound produced by thermotolerant Bacillus subtilis KFSB5 isolated from compost soil92328Search in Google Scholar
Sharma N., A. Gupta and N. Gautam. 2014. Characterization of bacteriocin like inhibitory substance produced by a new strain Brevibacillus borstelensis AG1 isolated from ‘Marcha’. Braz. J. Microbiol. 45: 1007–1015.SharmaN.A.GuptaN.Gautam2014Characterization of bacteriocin like inhibitory substance produced by a new strain Brevibacillus borstelensis AG1 isolated from ‘Marcha’451007101510.1590/S1517-83822014000300033420494125477937Search in Google Scholar
Smalla K., A. Sessitsch and A. Hartmann. 2006. The Rhizosphere: ‘soil compartment influenced by the root’. FEMS Microbiol. Ecol. 56: 165–165.SmallaK.A.SessitschA.Hartmann2006The Rhizosphere: ‘soil compartment influenced by the root’5616516510.1111/j.1574-6941.2006.00148.x16629746Search in Google Scholar
Stackebrandt, E., and B. Goebel. 1994. Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the present species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 44: 846–849.StackebrandtE., and B.Goebel1994Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the present species definition in bacteriology4484684910.1099/00207713-44-4-846Search in Google Scholar
Sziderics A.H., F. Rasche, F. Trognitz, A. Sessitsch and E. Wilhelm. 2007. Bacterial endophytes contribute to abiotic stress adaptation in pepper plants (Capsicum annuum L.). Can. J. Microbiol. 53: 1195–1202.SzidericsA.H.F.RascheF.TrognitzA.SessitschE.Wilhelm2007Bacterial endophytes contribute to abiotic stress adaptation in pepper plants (Capsicum annuum L.)531195120210.1139/W07-08218026213Search in Google Scholar
Van Loon L.C. and P.A.H.M. Bakker. 2006. Induced Systemic Resistance as a Mechanism of Disease Suppression by Rhizobacteria. In: PGPR: Biocontrol and Biofertilization. Z.A. Siddiqui, editor. Springer Netherlands, Dordrecht. 39–66.Van LoonL.C.P.A.H.M.Bakker2006Induced Systemic Resistance as a Mechanism of Disease Suppression by RhizobacteriaIn:Z.A.Siddiqui,editor. Springer NetherlandsDordrecht3966Search in Google Scholar
Wariss H.M., M. Mukhtar, S. Anjum, G.R. Bhatti, S.A. Pirzada and K. Alam. 2013. Floristic composition of the plants of the Cholistan Desert, Pakistan. Am. J. Plant Sci. 4: 58–65.WarissH.M.M.MukhtarS.AnjumG.R.BhattiS.A.PirzadaK.Alam2013Floristic composition of the plants of the Cholistan Desert, Pakistan4586510.4236/ajps.2013.412A1009Search in Google Scholar