Acceso abierto

Usage of microsatellite markers for characterization of polyploids: a case study in reference to hexaploid bamboo species


Cite

Bhandawat A, Sharma V, Sharma H, Sood A, Sharma RK (2014) Development and crosstransferability of functionally relevant micro-satellite markers in Dendrocalamus latiflorus and related bamboo species. J. Genet. 93: e48-55. https://doi.org/10.1007/s12041-014-0377-910.1007/s12041-014-0377-9Search in Google Scholar

Bhandawat A, Sharma V, Singh P, Seth R, Nag A, Kaur J, Sharma RK (2019) Discovery and Utilization of EST-SSR Marker Resource for Genetic Diversity and Population Structure Analyses of a Subtropical Bamboo, Dendrocalamus hamiltonii. Biochem Genet. 57(5):652-672. https://doi.org/10.1007/s10528-019-09914-410.1007/s10528-019-09914-430953244Search in Google Scholar

Bhandawat A, Singh G, Raina AS, Kaur J, Sharma RK (2015) Development of genic SSR marker resource from RNASeq data in Dendrocalamus latiflorus. J. Plant Biochem. Biotechnol 25:179-190. https://doi.org/10.1007/s13562-015-0323-910.1007/s13562-015-0323-9Search in Google Scholar

Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8): 2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x10.1111/j.1365-294X.2005.02553.x15969739Search in Google Scholar

Garcia-Verdugo C, Calleja JA, Vargas P, Silva L, Moreira O, Pulido F (2013) Polyploidy and microsatellite variation in the relict tree Prunus lusitanica L.: how effective are refugia in preserving genotypic diversity of clonal taxa? Mol. Ecol. 22(6):1546-1557. https://doi.org/10.1111/mec.1219410.1111/mec.1219423379976Search in Google Scholar

Guo ZH, Ma PF, Yang GQ, et al. (2019) Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos. Mol. Plant. 12(10): 1353-1365. https://doi.org/10.1016/j.molp.2019.05.00910.1016/j.molp.2019.05.00931145999Search in Google Scholar

Meena RK, Bhandhari MS, Barthwal S, Ginwal HS (2019) Genetic diversity and structure of Dendrocalamus hamiltonii natural metapopulation: a commercially important bamboo species of northeast Himalayas. 3 Biotech 9: 60. https://doi.org/10.1007/s13205-019-1591-110.1007/s13205-019-1591-1635615230729084Search in Google Scholar

Obbard DJ, Harris SA, Pannell JR (2006) Simple allelic-phenotype diversity and differentiation statistics for allopolyploids. Heredity (Edinb) 97:296-303. https://doi.org/10.1038/sj.hdy.680086210.1038/sj.hdy.680086216823402Search in Google Scholar

Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetics software for teaching and research-an update. Bioinformatics 28(19): 2537-2539. https://doi.org/10.1093/bioinformatics/bts46010.1093/bioinformatics/bts460346324522820204Search in Google Scholar

Pfeiffer T, Roschanski AM, Pannell JR, Korbecka G, Schnittler M (2011) Characterization of microsatellite loci and reliable genotyping in a polyploid plant, Mercurialis perennis (Euphorbiaceae). J. Hered. 102: 479-88. https://doi.org/10.1186/s13104-017-2700-z10.1186/s13104-017-2700-z555379928797302Search in Google Scholar

Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155(2): 945–959.10.1093/genetics/155.2.945146109610835412Search in Google Scholar

Sampson JF, Byrne M (2012) Genetic diversity and multiple origins of polyploidy Atriplex nummularia Lindl. (Chenopodiaceae). Biol. J. Linn. Soc. 105:218-230. https://doi.org/10.1111/j.1095-8312.2011.01787.x10.1111/j.1095-8312.2011.01787.xSearch in Google Scholar

Teixeira H, Rodrıguez-Echeverrıa S, Nabais C (2014) Genetic Diversity and Differentiation of Juniperus thurifera in Spain and Morocco as determined by SSR. PLoS ONE 9(2): e88996. https://doi.org/10.1371/journal.pone.008899610.1371/journal.pone.0088996392306224533164Search in Google Scholar

Thakur A, Barthwal S, Ginwal HS (2015) Genetic diversity in bamboos: conservation and improvement for productivity. In Kaushik S, Singh YP, kumar D, Thapaliyal M and Barthwal S (eds) Bamboos in India (ed.), ENVIS Centre on Forestry, Dehradun, pp. 131-146.Search in Google Scholar

Van Dijk T, Noordijk Y, Dubos T, Bink MCAM, Meulenbroek BJ, Visser RGF, Van de Weg E (2012) Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids. BMC Plant Biol. 12: 25. https://doi.org/10.1186/1471-2229-12-2510.1186/1471-2229-12-25333838322340438Search in Google Scholar

Yeh FC, Yang RC, Boyles TBJ, Ye ZH, Mao JX (1999) POPGENE Version 1.32: Microsoft Window-Based Freeware for Population Genetics Analysis, Molecular Biology and Biotechnology Centre, University of Alberta, EdmontonSearch in Google Scholar

eISSN:
2509-8934
Idioma:
Inglés
Calendario de la edición:
Volume Open
Temas de la revista:
Life Sciences, Molecular Biology, Genetics, Biotechnology, Plant Science