MW353019-FAdV-5/B-I-Intestinum | |||||||||||||
MW353018-FAdV-1/A-L-Liver | 2.556 | ||||||||||||
2.898 | 2.933 | ||||||||||||
2.264 | 2.499 | 0.585 | |||||||||||
2.769 | 2.716 | 0.495 | 0.411 | ||||||||||
2.814 | 2.554 | 0.565 | 0.616 | 0.610 | |||||||||
2.762 | 2.753 | 0.568 | 0.401 | 0.413 | 0.654 | ||||||||
2.760 | 2.810 | 0.611 | 0.343 | 0.427 | 0.655 | 0.413 | |||||||
2.892 | 2.870 | 0.515 | 0.380 | 0.384 | 0.623 | 0.158 | 0.414 | ||||||
2.880 | 2.591 | 0.597 | 0.325 | 0.428 | 0.627 | 0.406 | 0.049 | 0.409 | |||||
2.710 | 2.520 | 0.558 | 0.615 | 0.605 | 0.047 | 0.652 | 0.652 | 0.621 | 0.627 | ||||
2.751 | 2.748 | 0.568 | 0.395 | 0.414 | 0.676 | 0.030 | 0.412 | 0.152 | 0.413 | 0.673 | |||
2.844 | 2.837 | 0.509 | 0.374 | 0.367 | 0.638 | 0.149 | 0.408 | 0.028 | 0.395 | 0.632 | 0.142 | ||
3.198 | 2.707 | 3.204 | 3.127 | 3.702 | 4.099 | 3.087 | 3.813 | 2.972 | 3.705 | 4.068 | 2.893 | 2.854 |
A | T/U | C | G | |
---|---|---|---|---|
A | - | |||
T/U | - | |||
C | - | |||
G | - |
T(U) | C | A | G | Total | T-1 | C-1 | A-1 | G-1 | Pos 1 | T-2 | C-2 | A-2 | G-2 | Pos 2 | T-3 | C-3 | A-3 | G-3 | Pos 3 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1/A | 24.7 | 27.5 | 18.1 | 29.8 | 33 | 18.4 | 24.7 | 24.1 | 30 | 33.4 | 14.7 | 22.1 | 11 | 30.5 | 14.8 | 43.3 | ||||
2/D | 26.0 | 24.9 | 21.0 | 28.0 | 32 | 16.7 | 24.7 | 27.0 | 33 | 32.7 | 16.0 | 18.7 | 14 | 25.4 | 22.4 | 38.5 | ||||
3/D | 25.6 | 25.3 | 19.2 | 30.0 | 31 | 16.5 | 23.4 | 29.4 | 35 | 29.7 | 16.5 | 18.8 | 11 | 29.8 | 17.5 | 41.7 | ||||
MW353018-FAdV-1/A-L-Liver | ||||||||||||||||||||
MW353019-FAdV-5/B-I-Intestinum | ||||||||||||||||||||
4/C | 23.4 | 26.1 | 17.8 | 32.7 | 884.0 | 34 | 15.6 | 27.7 | 28.1 | 29 | 30.5 | 18.3 | 21.7 | 7 | 32.3 | 12.2 | 48.3 | |||
5/B | 25.9 | 25.7 | 18.8 | 29.5 | 32 | 16.6 | 24.3 | 26.9 | 31 | 32.6 | 16.9 | 19.9 | 15 | 32.3 | 15.3 | 41.7 | ||||
6/E | 27.5 | 24.1 | 20.9 | 27.6 | 33 | 17.4 | 24.4 | 25.1 | 33 | 30.8 | 18.1 | 18.1 | 16 | 28.0 | 20.1 | 39.6 | ||||
7/E | 25.1 | 26.1 | 18.6 | 30.3 | 32 | 17.9 | 23.6 | 26.9 | 32 | 30.2 | 16.3 | 21.3 | 11 | 24.2 | 16.0 | 42.1 | ||||
8a/E | 27.0 | 24.6 | 21.7 | 26.7 | 33 | 17.0 | 24.7 | 25.7 | 32 | 31.3 | 18.3 | 18.3 | 16 | 30.0 | 22.1 | 36.1 | ||||
9/D | 23.6 | 26.1 | 17.8 | 32.5 | 34 | 15.6 | 22.7 | 28.1 | 29 | 31.2 | 18.6 | 21.4 | 9 | 25.4 | 11.9 | 48.0 | ||||
10/C | 25.9 | 25.7 | 18.7 | 29.6 | 32 | 17.3 | 23.6 | 27.2 | 31 | 32.2 | 16.6 | 20.3 | 15 | 31.6 | 16.0 | 41.3 | ||||
11/D | 25.1 | 25.9 | 17.9 | 31.1 | 31 | 18.0 | 23.7 | 27.0 | 32 | 30.7 | 16.0 | 21.7 | 12 | 27.7 | 14.1 | 44.6 | ||||
8b/E | 25.9 | 25.6 | 20.3 | 28.2 | 32 | 17.0 | 24.7 | 26.7 | 32 | 33.3 | 16.0 | 18.3 | 14 | 29.2 | 20.1 | 39.6 | ||||
Avg. | 25.3 | 26.0 | 19.4 | 29.3 | 31 | 18.3 | 23.8 | 26.6 | 31 | 31.6 | 17.2 | 20.6 | 14 | 28.2 | 17.1 | 40.7 |
Nucleotide sequence | Parameters | Substitution | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T92+G+I | 29 | 9,817.521 | 9,619.014 | −4,780.382 | 0.00 | 0.43 | 1.25 | 0.228 | 0.228 | 0.272 | 0.272 | ||
HKY+G+I | 31 | 9,828.001 | 9,615.822 | −4,776.768 | 0.00 | 0.41 | 1.29 | 0.209 | 0.247 | 0.260 | 0.283 | ||
TN93+G+I | 32 | 9,830.888 | 9,611.875 | −4,773.785 | 0.00 | 0.41 | 1.33 | 0.209 | 0.247 | 0.260 | 0.283 | ||
K2+G+I | 28 | 9,853.291 | 9,661.621 | −4,802.694 | 0.00 | 0.45 | 1.20 | 0.250 | 0.250 | 0.250 | 0.250 | ||
GTR+G+I | 35 | 9,853.608 | 9,614.092 | −4,771.865 | 0.00 | 0.42 | 1.33 | 0.209 | 0.247 | 0.260 | 0.283 | ||
T92+G | 28 | 9,875.288 | 9,683.618 | −4,813.693 | n/a | 1.33 | 1.01 | 0.228 | 0.228 | 0.272 | 0.272 | ||
KHY+G | 30 | 9,887.801 | 9,682.458 | −4,811.096 | n/a | 1.32 | 1.02 | 0.209 | 0.247 | 0.260 | 0.283 | ||
T93+G | 31 | 9,893.237 | 9,681.058 | −4,809.387 | n/a | 1.33 | 1.02 | 0.209 | 0.247 | 0.260 | 0.283 | ||
JC+G+I | 27 | 9,902.143 | 9,717.311 | −4,831.547 | 0.00 | 0.50 | 0.50 | 0.250 | 0.250 | 0.250 | 0.250 | ||
K2+G | 27 | 9,905.582 | 9,720.750 | −4,833.267 | n/a | 1.37 | 0.98 | 0.250 | 0.250 | 0.250 | 0.250 | ||
CTR+G | 34 | 9,909.610 | 9,676.927 | −4,804.292 | n/a | 1.32 | 1.02 | 0.209 | 0.247 | 0.260 | 0.283 | ||
JC+G | 26 | 9,945.931 | 9,767.937 | −4,857.868 | n/a | 1.41 | 0.50 | 0.250 | 0.250 | 0.250 | 0.250 | ||
T92 | 27 | 10,086.086 | 9,901.254 | −4,923.519 | n/a | n/a | 0.98 | 0.228 | 0.228 | 0.272 | 0.272 | ||
T92+I | 28 | 10,090.277 | 9,898.607 | −4,921.187 | 0.01 | n/a | 1.02 | 0.228 | 0.228 | 0.272 | 0.272 | ||
HKY | 29 | 10,103.858 | 9,904.644 | −4,923.197 | n/a | n/a | 0.50 | 0.209 | 0.247 | 0.260 | 0.283 | ||
K2 | 26 | 10,104.355 | 9,925.864 | −4,936.831 | n/a | n/a | 0.85 | 0.250 | 0.250 | 0.250 | 0.250 | ||
HKI+I | 30 | 10,107.250 | 9,899.012 | −4,919.373 | 0.02 | n/a | 0.87 | 0.209 | 0.247 | 0.260 | 0.283 | ||
TN93 | 30 | 10,108.001 | 9,901.711 | −4,920.722 | n/a | n/a | 0.86 | 0.209 | 0.247 | 0.260 | 0.283 | ||
K2+I | 27 | 10,111.923 | 9,922.418 | −4,934.100 | 0.01 | n/a | 0.86 | 0.250 | 0.250 | 0.250 | 0.250 | ||
TN93+I | 31 | 10,113.216 | 9,895.822 | −4,916.768 | 0.02 | n/a | 0.87 | 0.209 | 0.247 | 0.260 | 0.283 | ||
GTR | 33 | 10,111.923 | 9,886.075 | −4,909.876 | n/a | n/a | 0.87 | 0.290 | 0.247 | 0.260 | 0.283 | ||
GTR+I | 34 | 10,113.216 | 9,880.533 | −4,906.095 | 0.02 | n/a | 0.87 | 0.209 | 0.247 | 0.260 | 0.283 | ||
JC | 25 | 10,130.574 | 9,959.419 | −4,954.616 | n/a | n/a | 0.50 | 0.250 | 0.250 | 0.250 | 0.250 | ||
JC+I | 26 | 10,136.144 | 9,958.150 | −4,952.975 | 0.01 | n/a | 0.50 | 0.250 | 0.250 | 0.250 | 0.250 | ||
Nucleotide sequence | Parameters | Substitution | |||||||||||
T92+G+I | 29 | 0.050 | 0.060 | 0.152 | 0.050 | 0.152 | 0.060 | 0.050 | 0.127 | 0.060 | 0.127 | 0.050 | 0.060 |
HKY+G+I | 31 | 0.054 | 0.056 | 0.160 | 0.045 | 0.147 | 0.061 | 0.045 | 0.140 | 0.061 | 0.118 | 0.054 | 0.056 |
TN93+G+I | 32 | 0.053 | 0.055 | 0.202 | 0.044 | 0.115 | 0.600 | 0.044 | 0.110 | 0.060 | 0.149 | 0.053 | 0.055 |
K2+G+I | 28 | 0.057 | 0.057 | 0.136 | 0.057 | 0.136 | 0.057 | 0.057 | 0.136 | 0.057 | 0.136 | 0.057 | 0.057 |
GTR+G+I | 35 | 0.055 | 0.043 | 0.201 | 0.047 | 0.116 | 0.049 | 0.034 | 0.111 | 0.080 | 0.148 | 0.043 | 0.073 |
T92+G | 28 | 0.057 | 0.068 | 0.137 | 0.057 | 0.137 | 0.068 | 0.057 | 0.115 | 0.068 | 0.115 | 0.057 | 0.068 |
KHY+G | 30 | 0.061 | 0.064 | 0.144 | 0.051 | 0.132 | 0.070 | 0.051 | 0.126 | 0.070 | 0.106 | 0.061 | 0.064 |
T93+G | 31 | 0.061 | 0.064 | 0.168 | 0.051 | 0.112 | 0.070 | 0.051 | 0.106 | 0.070 | 0.124 | 0.061 | 0.064 |
JC+G+I | 27 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 |
K2+G | 27 | 0.063 | 0.063 | 0.124 | 0.063 | 0.124 | 0.063 | 0.063 | 0.124 | 0.063 | 0.124 | 0.063 | 0.063 |
CTR+G | 34 | 0.052 | 0.050 | 0.168 | 0.044 | 0.112 | 0.061 | 0.040 | 0.107 | 0.098 | 0.124 | 0.053 | 0.090 |
JC+G | 26 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 |
T92 | 27 | 0.061 | 0.073 | 0.126 | 0.061 | 0.126 | 0.073 | 0.061 | 0.106 | 0.073 | 0.106 | 0.061 | 0.073 |
T92+I | 28 | 0.061 | 0.073 | 0.127 | 0.061 | 0.127 | 0.073 | 0.061 | 0.106 | 0.073 | 0.106 | 0.061 | 0.073 |
HKY | 29 | 0.066 | 0.069 | 0.132 | 0.056 | 0.121 | 0.076 | 0.056 | 0.115 | 0.076 | 0.097 | 0.066 | 0.069 |
K2 | 26 | 0.067 | 0.067 | 0.115 | 0.067 | 0.115 | 0.067 | 0.057 | 0.115 | 0.067 | 0.115 | 0.067 | 0.067 |
HKI+I | 30 | 0.066 | 0.069 | 0.133 | 0.056 | 0.122 | 0.075 | 0.056 | 0.116 | 0.075 | 0.098 | 0.066 | 0.069 |
TN93 | 30 | 0.066 | 0.069 | 0.151 | 0.056 | 0.105 | 0.076 | 0.056 | 0.100 | 0.076 | 0.111 | 0.066 | 0.069 |
K2+I | 27 | 0.067 | 0.067 | 0.115 | 0.083 | 0.115 | 0.067 | 0.067 | 0.115 | 0.067 | 0.115 | 0.067 | 0.067 |
TN93+I | 31 | 0.066 | 0.069 | 0.152 | 0.056 | 0.104 | 0.075 | 0.056 | 0.099 | 0.075 | 0.112 | 0.066 | 0.069 |
GTR | 33 | 0.048 | 0.052 | 0.153 | 0.041 | 0.106 | 0.070 | 0.042 | 0.101 | 0.110 | 0.113 | 0.061 | 0.101 |
GTR+I | 34 | 0.048 | 0.053 | 0.154 | 0.041 | 0.106 | 0.069 | 0.043 | 0.101 | 0.110 | 0.113 | 0.060 | 0.102 |
JC | 25 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 |
JC+I | 26 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 | 0.083 |
Flock from farm | Age | ||
---|---|---|---|
1 day old | 21 days old | 42 days old | |
AO | not detected | not detected | not detected |
P | not detected | not detected | not detected |
AO&P | not detected | not detected | not detected |
C | not detected | FAdVs 1/A and 5/B | not detected |
Codon | Count | RSCU | Codon | Count | RSCU | Codon | Count | RSCU | Codon | Count | RSCU |
---|---|---|---|---|---|---|---|---|---|---|---|
UUU(F) | 18 | 0.8 | UCU(S) | 21.9 | 0.84 | UAU(Y) | 9.6 | 0.63 | UGU(C) | 13.7 | 0.72 |
UUC(F) | 26.9 | 1.2 | UCC(S) | 35.4 | 1.36 | UAC(Y) | 20.8 | 1.37 | UGC(C) | 24.4 | 1.28 |
UUA(L) | 11.4 | 0.64 | CA(S) | 17.7 | 0.68 | UAA(*) | 12.5 | 0.84 | UGA(*) | 15.4 | 1.03 |
UUG(L) | 29.2 | 1.63 | UCG(S) | 42.3 | 1.63 | UAG(*) | 16.8 | 1.13 | UGG(W) | 20.2 | 1.00 |
CUU(L) | 10.9 | 0.61 | CCU(P) | 17.5 | 0.69 | CAU(H) | 11.3 | 0.99 | CGU(R) | 17.4 | 0.79 |
CUC(L) | 23.6 | 1.32 | CCC(P) | 28.9 | 1.15 | CAC(H) | 11.4 | 1.01 | CGC(R) | 29.4 | 1.33 |
CUA(L) | 7.8 | 0.43 | CCA(P) | 17.4 | 0.69 | CAA(Q) | 11.9 | 0.88 | CGA(R) | 18.2 | 0.83 |
CUG(L) | 24.6 | 1.38 | CCG(P) | 37.1 | 1.47 | CAG(Q) | 15.1 | 1.12 | CGG(R) | 27.1 | 1.23 |
AUU(I) | 11.3 | 0.86 | ACU(T) | 12.2 | 0.57 | AAU(N) | 9.9 | 0.65 | AGU(S) | 14.1 | 0.54 |
AUC(I) | 19.8 | 1.51 | ACC(T) | 25.9 | 1.2 | AAC(N) | 20.6 | 1.35 | AGC(S) | 24.6 | 0.95 |
AUA(I) | 8.2 | 0.63 | ACA(T) | 15.3 | 0.71 | AAA(K) | 17.9 | 0.94 | AGA(R) | 16.5 | 0.75 |
AUG(M) | 22.1 | 1 | ACG(T) | 32.9 | 1.52 | AAG(K) | 20.1 | 1.06 | AGG(R) | 23.4 | 1.06 |
GUU(V) | 15.5 | 0.73 | GCU(A) | 21.5 | 0.83 | GAU(D) | 11.4 | 0.68 | GGU(G) | 20.0 | 0.81 |
GUC(V) | 25.6 | 1.21 | GCC(A) | 31.3 | 1.21 | GAC(D) | 21.9 | 1.32 | GGC(G) | 26.9 | 1.09 |
GUA(V) | 14.4 | 0.68 | GCA(A) | 16.3 | 0.63 | GAA(E) | 19.6 | 0.94 | GGA(G) | 26.5 | 1.07 |
GUG(V) | 29 | 1.37 | GCG(A) | 34.6 | 1.34 | GAG(E) | 22.1 | 1.06 | GGG(G) | 15.2 | 1.02 |
14 | 487 | 0.974000 | 0.306276 | 0.431275 | 1.846440 |