Phylogenetic analysis of small ruminant lentiviruses originating from naturally infected sheep and goats from Poland based on the long terminal repeat sequences

1Blatti-Cardinaux L., Sanjosé L., Zahno M.L., Zanoni R., Reina R., Bertoni G.: Detailed analysis of the promoter activity of an attenuated lentivirus. J Gen Virol 2016, 97, 1699–1708, doi: 10.1099/jgv.0.000489. Blatti-Cardinaux L. Sanjosé L. Zahno M.L. Zanoni R. Reina R. Bertoni G. Detailed analysis of the promoter activity of an attenuated lentivirus J Gen Virol 2016 97 1699 1708 10.1099/jgv.0.00048927114068Open DOISearch in Google Scholar

2Erhouma E., Guiguen F., Chebloune Y., Gauthier D., Lakhal L.M., Greenland T., Mornex J.F., Leroux C., Alogninouwa T.: Small ruminant lentivirus proviral sequences from wild ibexes in contact with domestic goats. J Gen Virol 2008, 89, 1478–1484, doi: 10.1099/vir.0.2008/000364-0. Erhouma E. Guiguen F. Chebloune Y. Gauthier D. Lakhal L.M. Greenland T. Mornex J.F. Leroux C. Alogninouwa T. Small ruminant lentivirus proviral sequences from wild ibexes in contact with domestic goats J Gen Virol 2008 89 1478 1484 10.1099/vir.0.2008/000364-018474564Open DOISearch in Google Scholar

3Glaria I., Reina R., Crespo H., de Andres X., Ramirez H., Biescas E., Perez M.M., Badiola J., Lujan L., Amorena B., de Andrés D.: Phylogenetic analysis of SRLV sequences from an arthritic sheep outbreak demonstrates the introduction of CAEV-like viruses among Spanish sheep. Vet Microbiol 2009, 138, 156–162, doi: 10.1016/j.vetmic.2009.03.002. Glaria I. Reina R. Crespo H. de Andres X. Ramirez H. Biescas E. Perez M.M. Badiola J. Lujan L. Amorena B. de Andrés D. Phylogenetic analysis of SRLV sequences from an arthritic sheep outbreak demonstrates the introduction of CAEV-like viruses among Spanish sheep Vet Microbiol 2009 138 156 162 10.1016/j.vetmic.2009.03.00219339126Open DOISearch in Google Scholar

4Glaria I., Reina R., Ramírez H., de Andrés X., Crespo H., Jauregui P., Salazar E., Luján L., Pérez M.M., Benavides J., Pérez V., Polledo L., García-Marín J.F., Riezu J.I., Borrás F., Amorena B., de Andrés D.: Visna/Maedi virus genetic characterization and serological diagnosis of infection in sheep from a neurological outbreak. Vet Microbiol 2012, 155, 137– 146, doi: 10.1016/j.vetmic.2011.08.027. Glaria I. Reina R. Ramírez H. de Andrés X. Crespo H. Jauregui P. Salazar E. Luján L. Pérez M.M. Benavides J. Pérez V. Polledo L. García-Marín J.F. Riezu J.I. Borrás F. Amorena B. de Andrés D. Visna/Maedi virus genetic characterization and serological diagnosis of infection in sheep from a neurological outbreak Vet Microbiol 2012 155 137 146 10.1016/j.vetmic.2011.08.02721940116Open DOISearch in Google Scholar

5Gomez-Lucia E., Barquero N., Domenech A.: Maedi-Visna virus: current perspectives. Vet Med (Auckl) 2018, 9, 11–21, doi: 10.2147/VMRR.S136705. Gomez-Lucia E. Barquero N. Domenech A. Maedi-Visna virus: current perspectives Vet Med (Auckl) 2018 9 11 21 10.2147/VMRR.S136705604248330050863Open DOISearch in Google Scholar

6Grego E., Reina R., Lanfredini S., Tursi M., Favole A., Profiti M., Lungu M.M., Perona G., Gay L., Stella M.C., DeMeneghi D.: Viral load, tissue distribution and histopathological lesions in goats naturally and experimentally infected with the Small Ruminant Lentivirus Genotype E (subtype E1 Roccaverano strain). Res Vet Sci 2018, 118, 107– 114, doi: 10.1016/j.rvsc.2018.01.008. Grego E. Reina R. Lanfredini S. Tursi M. Favole A. Profiti M. Lungu M.M. Perona G. Gay L. Stella M.C. DeMeneghi D. Viral load, tissue distribution and histopathological lesions in goats naturally and experimentally infected with the Small Ruminant Lentivirus Genotype E (subtype E1 Roccaverano strain) Res Vet Sci 2018 118 107 114 10.1016/j.rvsc.2018.01.00829421479Open DOISearch in Google Scholar

7Jeeninga R.E., Hoogenkamp M., Armand-Ugon M., de Baar M., Verhoef K., Berkhout B.: Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G. J Virol 2000, 74, 3740–3751, doi: 10.1128/jvi.74.8.3740-3751.2000. Jeeninga R.E. Hoogenkamp M. Armand-Ugon M. de Baar M. Verhoef K. Berkhout B. Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G J Virol 2000 74 3740 3751 10.1128/jvi.74.8.3740-3751.200011188310729149Open DOISearch in Google Scholar

8Junkuszew A., Dudko P., Bojar W., Olech M., Osiński Z., Gruszecki T.M., Kania M.G., Kuźmak J., Czerski G.: Risk factors associated with small ruminant lentivirus infection in eastern Poland sheep flocks. Prev Vet Med 2016, 127, 44–49, doi: 10.1016/j.prevetmed.2016.03.011. Junkuszew A. Dudko P. Bojar W. Olech M. Osiński Z. Gruszecki T.M. Kania M.G. Kuźmak J. Czerski G. Risk factors associated with small ruminant lentivirus infection in eastern Poland sheep flocks Prev Vet Med 2016 127 44 49 10.1016/j.prevetmed.2016.03.01127094139Open DOISearch in Google Scholar

9Kaba J., Czopowicz M., Ganter M., Nowicki M., Witkowski L., Nowicka D., Szaluś-Jordanow O.: Risk factors associated with seropositivity to small ruminant lentiviruses in goat herds. Res Vet Sci 2013, 94, 225–227, doi: 10.1016/j.rvsc.2012.09.018. Kaba J. Czopowicz M. Ganter M. Nowicki M. Witkowski L. Nowicka D. Szaluś-Jordanow O. Risk factors associated with seropositivity to small ruminant lentiviruses in goat herds Res Vet Sci 2013 94 225 227 10.1016/j.rvsc.2012.09.01823089156Open DOISearch in Google Scholar

10Kalogianni A.I., Bossis I., Ekateriniadou L.V., Gelasakis A.I.: Etiology, Epizootiology and Control of Maedi-Visna in Dairy Sheep: A Review. Animals 2020, 10, 616, doi: 10.3390/ ani10040616. Kalogianni A.I. Bossis I. Ekateriniadou L.V. Gelasakis A.I. Etiology, Epizootiology and Control of Maedi-Visna in Dairy Sheep: A Review Animals 2020 10 616 10.3390/ani10040616722282032260101Open DOISearch in Google Scholar

11Kumar S., Stecher G., Tamura K.: MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016, 33, 1870–1874, doi: 10.1093/molbev/ msw054. Kumar S. Stecher G. Tamura K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets Mol Biol Evol 2016 33 1870 1874 10.1093/molbev/msw054821082327004904Open DOISearch in Google Scholar

12Martin D.P., Murrell B., Golden M., Khoosal A., Muhire B.: RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol 2015, 1, vev003, doi: 10.1093/ve/vev003. Martin D.P. Murrell B. Golden M. Khoosal A. Muhire B. RDP4: Detection and analysis of recombination patterns in virus genomes Virus Evol 2015 1 vev003 10.1093/ve/vev003501447327774277Open DOISearch in Google Scholar

13Mendiola W.P.S., Tórtora J.L., Martínez H.A., García M.M., Cuevas-Romero S., Cerriteño J.L., Ramírez H.: Genotyping Based on the LTR Region of Small Ruminant Lentiviruses from Naturally Infected Sheep and Goats from Mexico. Biomed Res Int 2019, 4279573, doi: 10.1155/2019/4279573. Mendiola W.P.S. Tórtora J.L. Martínez H.A. García M.M. Cuevas-Romero S. Cerriteño J.L. Ramírez H. Genotyping Based on the LTR Region of Small Ruminant Lentiviruses from Naturally Infected Sheep and Goats from Mexico Biomed Res Int 2019 4279573 10.1155/2019/4279573653588131214614Open DOISearch in Google Scholar

14Michiels R., Adjadj N.R., De Regge N.: Phylogenetic Analysis of Belgian Small Ruminant Lentiviruses Supports Cross Species Virus Transmission and Identifies New Subtype B5 Strains. Pathogens 2020, 9, 183, doi: 10.3390/pathogens9030183. Michiels R. Adjadj N.R. De Regge N. Phylogenetic Analysis of Belgian Small Ruminant Lentiviruses Supports Cross Species Virus Transmission and Identifies New Subtype B5 Strains Pathogens 2020 9 183 10.3390/pathogens9030183715772532138297Open DOISearch in Google Scholar

15Minguijón E., Reina R., Pérez M., Polledo L., Villoria M., Ramírez H., Leginagoikoa I., Badiola J.J., García-Marín J.F., de Andrés D., Luján L., Amorena B., Juste R.A.: Small ruminant lentivirus infections and diseases. Vet Microbiol 2015, 181, 75– 89, doi: 10.1016/j.vetmic.2015.08.007. Minguijón E. Reina R. Pérez M. Polledo L. Villoria M. Ramírez H. Leginagoikoa I. Badiola J.J. García-Marín J.F. de Andrés D. Luján L. Amorena B. Juste R.A. Small ruminant lentivirus infections and diseases Vet Microbiol 2015 181 75 89 10.1016/j.vetmic.2015.08.00726371852Open DOISearch in Google Scholar

16Olech M., Kuźmak J.: Molecular Characterization of Small Ruminant Lentiviruses of Subtype A5 Detected in Naturally Infected but Clinically Healthy Goats of Carpathian Breed. Pathogens 2020, 9, 992, doi: 10.3390/pathogens9120992. Olech M. Kuźmak J. Molecular Characterization of Small Ruminant Lentiviruses of Subtype A5 Detected in Naturally Infected but Clinically Healthy Goats of Carpathian Breed Pathogens 2020 9 992 10.3390/pathogens9120992776145433256245Open DOISearch in Google Scholar

17Olech M., Kuźmak J.: Molecular Characterization of Small Ruminant Lentiviruses in Polish Mixed Flocks Supports Evidence of Cross Species Transmission, Dual Infection, a Recombination Event, and Reveals the Existence of New Subtypes within Group A. Viruses 2021, 13, 2529, doi: 10.3390/v13122529. Olech M. Kuźmak J. Molecular Characterization of Small Ruminant Lentiviruses in Polish Mixed Flocks Supports Evidence of Cross Species Transmission, Dual Infection, a Recombination Event, and Reveals the Existence of New Subtypes within Group A Viruses 2021 13 2529 10.3390/v13122529870813034960798Open DOISearch in Google Scholar

18Olech M., Kycko A., Kuźmak J.: Molecular Characterization of Small Ruminant Lentiviruses Isolated from Polish Goats with Arthritis. Viruses 2022, 14, 735, doi: 10.3390/v14040735. Olech M. Kycko A. Kuźmak J. Molecular Characterization of Small Ruminant Lentiviruses Isolated from Polish Goats with Arthritis Viruses 2022 14 735 10.3390/v14040735903204635458465Open DOISearch in Google Scholar

19Ou S.H., Garcia-Martínez L.F., Paulssen E.J., Gaynor R.B.: Role of flanking E box motifs in human immunodeficiency virus type 1 TATA element function. J Virol 1994, 68, 7188–7199, doi: 10.1128/JVI.68.11.7188-7199.1994. Ou S.H. Garcia-Martínez L.F. Paulssen E.J. Gaynor R.B. Role of flanking E box motifs in human immunodeficiency virus type 1 TATA element function J Virol 1994 68 7188 7199 10.1128/JVI.68.11.7188-7199.19942371587933101Open DOISearch in Google Scholar

20Pérez M., Biescas E., Reina R., Glaria I., Marín B., Marquina A., Salazar E., Álvarez N., de Andrés D., Fantova E., Badiola J.J., Amorena B., Luján L.: Small ruminant lentivirus-induced arthritis: clinicopathologic findings in sheep infected by a highly replicative SRLV B2 genotype. Vet Pathol 2015, 52, 132–139, doi: 10.1177/0300985813519654. Pérez M. Biescas E. Reina R. Glaria I. Marín B. Marquina A. Salazar E. Álvarez N. de Andrés D. Fantova E. Badiola J.J. Amorena B. Luján L. Small ruminant lentivirus-induced arthritis: clinicopathologic findings in sheep infected by a highly replicative SRLV B2 genotype Vet Pathol 2015 52 132 139 10.1177/030098581351965424476938Open DOISearch in Google Scholar

21Ramírez H., Reina R., Amorena B., de Andrés D., Martínez H.A.: Small ruminant lentiviruses: genetic variability, tropism and diagnosis. Viruses 2013, 5, 1175–1207, doi: 10.3390/ v5041175. Ramírez H. Reina R. Amorena B. de Andrés D. Martínez H.A. Small ruminant lentiviruses: genetic variability, tropism and diagnosis Viruses 2013 5 1175 1207 10.3390/v5041175370527223611847Open DOISearch in Google Scholar

22Ramírez de Arellano E., Soriano V., Alcamil J., Holguín A.: New findings on transcription regulation across different HIV-1 subtypes. AIDS Rev 2006, 8, 9–16. Ramírez de Arellano E. Soriano V. Alcamil J. Holguín A. New findings on transcription regulation across different HIV-1 subtypes AIDS Rev 2006 8 9 16Search in Google Scholar

23Reina R., Mora M.I., Glaria I., García I., Solano C., Luján L., Badiola J.J., Contreras A., Berriatua E., Juste R., Mamoun R.Z., Rolland M., Amorena B., de André D.: Molecular characterization and phylogenetic study of Maedi Visna and Caprine Arthritis Encephalitis viral sequences in sheep and goats from Spain. Virus Research 2006, 121, 189–198, doi: 10.1016/j.virusres.2006.05.011. Reina R. Mora M.I. Glaria I. García I. Solano C. Luján L. Badiola J.J. Contreras A. Berriatua E. Juste R. Mamoun R.Z. Rolland M. Amorena B. de André D. Molecular characterization and phylogenetic study of Maedi Visna and Caprine Arthritis Encephalitis viral sequences in sheep and goats from Spain Virus Research 2006 121 189 198 10.1016/j.virusres.2006.05.01116870297Open DOISearch in Google Scholar

24Rolland M., Mooney J., Valas S., Perrin G., Mamoun R.Z.: Characterisation of an Irish caprine lentivirus strain–SRLV phylogeny revisited. Virus Res 2002, 85, 29–39, doi: 10.1016/s0168-1702(02)00015-1. Rolland M. Mooney J. Valas S. Perrin G. Mamoun R.Z. Characterisation of an Irish caprine lentivirus strain–SRLV phylogeny revisited Virus Res 2002 85 29 39 10.1016/s0168-1702(02)00015-111955636Open DOISearch in Google Scholar

25Ryan S., Tiley L., McConnell I., Blacklaws B.: Infection of dendritic cells by the Maedi-Visna lentivirus. J Virol 2000, 74, 10096–10103, doi: 10.1128/jvi.74.21.10096-10103.2000. Ryan S. Tiley L. McConnell I. Blacklaws B. Infection of dendritic cells by the Maedi-Visna lentivirus J Virol 2000 74 10096 10103 10.1128/jvi.74.21.10096-10103.200010204811024138Open DOISearch in Google Scholar

26Santry L.A., de Jong J., Gold A.C., Walsh S.R., Menzies P.I., Wootton S.K.: Genetic characterization of small ruminant lentiviruses circulating in naturally infected sheep and goats in Ontario, Canada. Virus Res 2013, 175, 30–44, doi: 10.1016/j.virusres.2013.03.019. Santry L.A. de Jong J. Gold A.C. Walsh S.R. Menzies P.I. Wootton S.K. Genetic characterization of small ruminant lentiviruses circulating in naturally infected sheep and goats in Ontario, Canada Virus Res 2013 175 30 44 10.1016/j.virusres.2013.03.01923583225Open DOISearch in Google Scholar

27Shah C., Böni J., Huder J.B., Vogt H.R., Mühlherr J., Zanoni R., Miserez R., Lutz H., Schüpbach J.: Phylogenetic analysis and reclassification of caprine and ovine lentiviruses based on 104 new isolates: evidence for regular sheep-to-goat transmission and worldwide propagation through livestock trade. Virology 2004, 319, 12–26, doi: 10.1016/j.virol.2003.09.047. Shah C. Böni J. Huder J.B. Vogt H.R. Mühlherr J. Zanoni R. Miserez R. Lutz H. Schüpbach J. Phylogenetic analysis and reclassification of caprine and ovine lentiviruses based on 104 new isolates: evidence for regular sheep-to-goat transmission and worldwide propagation through livestock trade Virology 2004 319 12 26 10.1016/j.virol.2003.09.04714967484Open DOISearch in Google Scholar

28van Opijnen T., Kamoschinski J., Jeeninga R.E., Berkhout B.: The human immunodeficiency virus type 1 promoter contains a CATA box instead of a TATA box for optimal transcription and replication. J Virol 2004, 78, 6883–6890, doi: 10.1128/JVI.78.13.6883-6890.2004. van Opijnen T. Kamoschinski J. Jeeninga R.E. Berkhout B. The human immunodeficiency virus type 1 promoter contains a CATA box instead of a TATA box for optimal transcription and replication J Virol 2004 78 6883 6890 10.1128/JVI.78.13.6883-6890.200442168115194764Open DOISearch in Google Scholar

29Zanoni R.G.: Phylogenetic analysis of small ruminant lentiviruses. J Gen Virol 1998, 79, 1951–1961, doi: 10.1099/0022-1317-79-8-1951. Zanoni R.G. Phylogenetic analysis of small ruminant lentiviruses J Gen Virol 1998 79 1951 1961 10.1099/0022-1317-79-8-19519714243Open DOISearch in Google Scholar