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Development of a method for isolation of melanin from archival FFPE tissues of human melanoma for structural studies by pyrolysis-gas chromatography-tandem mass spectrometry


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Fig. 1

Reconstructed total ion current MRM chromatogram of the pyrolysate of melanin isolated from FFPE primary melanoma (panels A and D) and FFPE melanoma lymph node metastases (panels B and E). Panels C and F show the pyrograms of synthetic eumelanin from L-3,4-dihydroxyphenylalanine (L-DOPA) with 10% incorporation of pheomelanin units. For peak designation see Table 1.
Reconstructed total ion current MRM chromatogram of the pyrolysate of melanin isolated from FFPE primary melanoma (panels A and D) and FFPE melanoma lymph node metastases (panels B and E). Panels C and F show the pyrograms of synthetic eumelanin from L-3,4-dihydroxyphenylalanine (L-DOPA) with 10% incorporation of pheomelanin units. For peak designation see Table 1.

Multiple reaction monitoring (MRM) settings for the analysis of melanin pyrolysate by GC/MS/MS

Time segment Retention time [min] Compound (Type*) MRM transition Collision energy [V]

Precursor Ion [m/z] Product Ion [m/z]

1 9.7 Thiazole (P1) 85 58 15
58 57 12
11.1 Toluene (NS1) 92 91 15
91 65 16

2 16.2 Styrene (NS2) 104 77 27
104 78 15
103 77 14

3 19.2 Phenol (NS3) 94 65 26
94 66 16
22.1 Methylphenol (NS4) 108 107 16
107 77 16

4 24.9 1,2-Benzenediol (NS5) 110 63 30
110 64 20
110 92 15
25.8 Benzothiazole (P2) 135 108 18
108 82 12

5 26.9 Indole (NS6) 117 89 30
117 90 16
90 63 27

6 28.2 4-Hydroxybenzothiazole (P3) 151 96 23
151 123 12
123 96 10
28.5 Methylindole (NS7) 130 77 27
130 103 14
103 77 10

7 29.3 – 29.9 2,3-Dihydro-5H-1,4-benzothiazin-5-one (P4) and its isomers (P4′ and P4″) 165 110 18
165 136 22
136 109 16

8 30.7 – 30.9 Methyl-2,3-dihydro-5H-1,4-benzothiazin-5-one (P5, P5′) 179 110 15
179 150 20
178 109 20
31.2 4-Hydroxy-6-ethylbenzothiazole (P6) 179 164 15
164 109 20
164 136 15
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1732-2693
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Life Sciences, Molecular Biology, Microbiology and Virology, Medicine, Basic Medical Science, Immunology