This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Akpinar M, Urek RO. 2014. Extracellular ligninolytic enzymes production by Pleurotus eryngii on agroindustrial wastes. Prep Biochem Biotechnol. 44:772–781.AkpinarMUrekRO2014Extracellular ligninolytic enzymes production by Pleurotus eryngii on agroindustrial wastesPrep Biochem Biotechnol4477278110.1080/10826068.2013.86787024279903Search in Google Scholar
Baratto MC, Juarez-Moreno K, Pogni R, Basosi R, Vazquez-Duhalt R. 2015. EPR and LC-MS studies on the mechanism of industrial dye decolorization by versatile peroxidase from Bjerkandera adusta. Environ Sci Pollut Res Int. 22:8683–8692.BarattoMCJuarez-MorenoKPogniRBasosiRVazquez-DuhaltR2015EPR and LC-MS studies on the mechanism of industrial dye decolorization by versatile peroxidase from Bjerkandera adustaEnviron Sci Pollut Res Int228683869210.1007/s11356-014-4051-925567062Search in Google Scholar
Bello-Gil D, Roig-Molina E, Fonseca J, Sarmiento-Ferrández MD, Ferrándiz M, Franco E, Mira E, Maestro B, Sanz JM. 2018. An enzymatic system for decolorization of wastewater dyes using immobilized CueO laccase-like multicopper oxidase on poly-3-hydroxybutyrate. Microb Biotechnol. 11(5):881–892.Bello-GilDRoig-MolinaEFonsecaJSarmiento-FerrándezMDFerrándizMFrancoEMiraEMaestroBSanzJM2018An enzymatic system for decolorization of wastewater dyes using immobilized CueO laccase-like multicopper oxidase on poly-3-hydroxybutyrateMicrob Biotechnol11(5):88189210.1111/1751-7915.13287611675129896867Search in Google Scholar
Buchfink B, Xie C, Huson DH. 2015. Fast and sensitive protein alignment using DIAMOND. Nat Methods. 12:59–60.BuchfinkBXieCHusonDH2015Fast and sensitive protein alignment using DIAMONDNat Methods12596010.1038/nmeth.317625402007Search in Google Scholar
Chitradevi V, Sivakumar V. 2011. Optimization and kinetics evaluation of biodegradation of synthetic azo reactive dye by fungal consortium. J Environ Sci Eng. 53:487–492.ChitradeviVSivakumarV2011Optimization and kinetics evaluation of biodegradation of synthetic azo reactive dye by fungal consortiumJ Environ Sci Eng53487492Search in Google Scholar
Cirik K, Kitis M, Cinar O. 2013. The effect of biological sulfate reduction on anaerobic color removal in anaerobic-aerobic sequencing batch reactors. Bioprocess Biosyst Eng. 36:579–589.CirikKKitisMCinarO2013The effect of biological sulfate reduction on anaerobic color removal in anaerobic-aerobic sequencing batch reactorsBioprocess Biosyst Eng3657958910.1007/s00449-012-0813-223277271Search in Google Scholar
Cocaign A, Bui LC, Silar P, Chan Ho Tong L. 2013. Biotransformation of Trichoderma spp. and their tolerance to aromatic amines, a major class of pollutants. Appl Environ Microbiol. 79:4719–4726.CocaignABuiLCSilarPChan Ho TongL2013Biotransformation of Trichoderma spp. and their tolerance to aromatic amines, a major class of pollutantsAppl Environ Microbiol794719472610.1128/AEM.00989-13371950023728813Search in Google Scholar
Dawkar VV, Jadhav UU, Tamboli DP, Govindwar SP. 2010. Efficient industrial dye decolorization by Bacillus sp. VUS with its enzyme system. Ecotoxicol Environ Saf. 73:1696–1703.DawkarVVJadhavUUTamboliDPGovindwarSP2010Efficient industrial dye decolorization by Bacillus sp. VUS with its enzyme systemEcotoxicol Environ Saf731696170310.1016/j.ecoenv.2010.07.00220655588Search in Google Scholar
Dou TY, Ge GB, Hao DC, Yang L. 2015. Functional and structural properties of a novel cellulosome-like multienzyme complex: efficient glycoside hydrolysis of water-insoluble 7-xylosyl-10-deacetylpaclitaxel. Sci Rep. 5:13768.DouTYGeGBHaoDCYangL2015Functional and structural properties of a novel cellulosome-like multienzyme complex: efficient glycoside hydrolysis of water-insoluble 7-xylosyl-10-deacetylpaclitaxelSci Rep51376810.1038/srep13768456225026347949Search in Google Scholar
Ferreira P, Medina M, Guillén F, Martínez MJ. 2005. Spectral and catalytic properties of aryl-alcohol oxidase, a fungal flavoenzyme acting on polyunsaturated alcohols. Biochem J. 389:731–738.FerreiraPMedinaMGuillénFMartínezMJ2005Spectral and catalytic properties of aryl-alcohol oxidase, a fungal flavoenzyme acting on polyunsaturated alcoholsBiochem J38973173810.1042/BJ20041903118072315813702Search in Google Scholar
Forootanfar H, Faramarzi MA. 2015. Insights into laccase producing organisms, fermentation states, purification strategies, and biotechnological applications. Biotechnol Prog. 31:1443–1463.ForootanfarHFaramarziMA2015Insights into laccase producing organisms, fermentation states, purification strategies, and biotechnological applicationsBiotechnol Prog311443146310.1002/btpr.217326399693Search in Google Scholar
Gomaa OM, Selim NS, Wee J, Linz JE. 2017. RNA Seq analysis of the role of calcium chloride stress and electron transport in mitochondria for malachite green decolorization by Aspergillus niger. Fungal Genet Biol. 105:1–7.GomaaOMSelimNSWeeJLinzJE2017RNA Seq analysis of the role of calcium chloride stress and electron transport in mitochondria for malachite green decolorization by Aspergillus nigerFungal Genet Biol1051710.1016/j.fgb.2017.05.00328552364Search in Google Scholar
Hao DC, Chen SL, Osbourn A, Liu LW. 2015. Temporal transcriptome changes induced by methyl jasmonate in Salvia sclarea. Gene 558:41–53.HaoDCChenSLOsbournALiuLW2015Temporal transcriptome changes induced by methyl jasmonate in Salvia sclareaGene558415310.1016/j.gene.2014.12.04325536164Search in Google Scholar
Hao DC, Ge GB, Xiao PG, Zhang Y, Yang L. 2011. The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing. PLoS One 6:e21220.HaoDCGeGBXiaoPGZhangYYangL2011The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencingPLoS One6e2122010.1371/journal.pone.0021220312084921731678Search in Google Scholar
Hao DC, Ge GB, Yang L. 2008. Bacterial diversity of Taxus rhizo-sphere: culture-independent and culture-dependent approaches. FEMS Microbiol Lett. 284:204–212.HaoDCGeGBYangL2008Bacterial diversity of Taxus rhizo-sphere: culture-independent and culture-dependent approachesFEMS Microbiol Lett28420421210.1111/j.1574-6968.2008.01201.x18576948Search in Google Scholar
Hao DC, Song SM, Mu J, Hu WL, Xiao PG. 2016. Unearthing microbial diversity of Taxus rhizosphere via MiSeq high-throughput amplicon sequencing and isolate characterization. Sci Rep. 6:22006.HaoDCSongSMMuJHuWLXiaoPG2016Unearthing microbial diversity of Taxus rhizosphere via MiSeq high-throughput amplicon sequencing and isolate characterizationSci Rep62200610.1038/srep22006483218227080869Search in Google Scholar
Hao DC, Xiao PG. 2011. Prediction of sites under adaptive evolution in flavin-containing monooxygenases: Selection pattern revisited. Chin Sci Bull. 56:1246–1255.HaoDCXiaoPG2011Prediction of sites under adaptive evolution in flavin-containing monooxygenases: Selection pattern revisitedChin Sci Bull561246125510.1007/s11434-011-4380-8Search in Google Scholar
Hao DC, Xiao PG, Chen SL. 2010. Phenotype prediction of non-synonymous single nucleotide polymorphisms in human phase II drug/xenobiotic metabolizing enzymes: perspectives on molecular evolution. Sci China Life Sci. 53:1252–1262.HaoDCXiaoPGChenSL2010Phenotype prediction of non-synonymous single nucleotide polymorphisms in human phase II drug/xenobiotic metabolizing enzymes: perspectives on molecular evolutionSci China Life Sci531252126210.1007/s11427-010-4062-920953949Search in Google Scholar
Hong YG, Gu JD. 2010. Physiology and biochemistry of reduction of azo compounds by Shewanella strains relevant to electron transport chain. Appl Microbiol Biotechnol. 88:637–643.HongYGGuJD2010Physiology and biochemistry of reduction of azo compounds by Shewanella strains relevant to electron transport chainAppl Microbiol Biotechnol8863764310.1007/s00253-010-2820-z293842020706834Search in Google Scholar
Hsueh CC, Chen BY, Yen CY. 2009. Understanding effects of chemical structure on azo dye decolorization characteristics by Aeromonas hydrophila. J Hazard Mater. 167:995–1001.HsuehCCChenBYYenCY2009Understanding effects of chemical structure on azo dye decolorization characteristics by Aeromonas hydrophilaJ Hazard Mater167995100110.1016/j.jhazmat.2009.01.07719237244Search in Google Scholar
Jasińska A, Paraszkiewicz K, Sip A, Długoński J. 2015. Malachite green decolorization by the filamentous fungus Myrothecium roridum – Mechanistic study and process optimization. Bioresour Technol. 194:43–48.JasińskaAParaszkiewiczKSipADługońskiJ2015Malachite green decolorization by the filamentous fungus Myrothecium roridum – Mechanistic study and process optimizationBioresour Technol194434810.1016/j.biortech.2015.07.00826185924Search in Google Scholar
Khan R, Fulekar MH. 2017. Mineralization of a sulfonated textile dye Reactive Red 31 from simulated wastewater using pellets of Aspergillus bombycis. Bioresour Bioprocess. 4:23.KhanRFulekarMH2017Mineralization of a sulfonated textile dye Reactive Red 31 from simulated wastewater using pellets of Aspergillus bombycisBioresour Bioprocess42310.1186/s40643-017-0153-9543577428580232Search in Google Scholar
Khandare RV, Rane NR, Waghmode TR, Govindwar SP. 2012. Bacterial assisted phytoremediation for enhanced degradation of highly sulfonateddiazo reactive dye. Environ. Sci Pollut Res Int. 19:1709–1718.KhandareRVRaneNRWaghmodeTRGovindwarSP2012Bacterial assisted phytoremediation for enhanced degradation of highly sulfonateddiazo reactive dye. EnvironSci Pollut Res Int191709171810.1007/s11356-011-0679-x22161298Search in Google Scholar
Kim SJ, Kweon O, Jones RC, Freeman JP. 2007. Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J Bacteriol. 189:464–472.KimSJKweonOJonesRCFreemanJP2007Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biologyJ Bacteriol18946447210.1128/JB.01310-06179738217085566Search in Google Scholar
Klema VJ, Solheid CJ, Klinman JP, Wilmot CM. 2013. Structural analysis of aliphatic versus aromatic substrate specificity in a copper amine oxidase from Hansenula polymorpha. Biochemistry 52: 2291–2301.KlemaVJSolheidCJKlinmanJPWilmotCM2013Structural analysis of aliphatic versus aromatic substrate specificity in a copper amine oxidase from Hansenula polymorphaBiochemistry522291230110.1021/bi3016845363342023452079Search in Google Scholar
Kumar L, E Futschik M. 2007. Mfuzz: a software package for soft clustering of microarray data. Bioinformation 2:5–7.KumarL, EFutschikM2007Mfuzz: a software package for soft clustering of microarray dataBioinformation25710.6026/97320630002005213999118084642Search in Google Scholar
Kumari K, Abraham TE. 2007. Biosorption of anionic textile dyes by nonviable biomass of fungi and yeast. Bioresour Technol. 98: 1704–1710.KumariKAbrahamTE2007Biosorption of anionic textile dyes by nonviable biomass of fungi and yeastBioresour Technol981704171010.1016/j.biortech.2006.07.03016997547Search in Google Scholar
Ma HY, Ning J, Ge GB, Yang L, Hao DC. 2017. Research progress of human cytochrome P450 2J2 and its ligands. Acta Pharm Sin. 52:26–33.MaHYNingJGeGBYangLHaoDC2017Research progress of human cytochrome P450 2J2 and its ligandsActa Pharm Sin522633Search in Google Scholar
Ng IS, Xu F, Ye C, Chen BY, Lu Y. 2014. Exploring metal effects and synergistic interactions of ferric stimulation on azo-dye decolorization by new indigenous Acinetobacter guillouiae Ax-9 and Rahnella aquatilis DX2b. Bioprocess Biosyst Eng. 37:217–224.NgISXuFYeCChenBYLuY2014Exploring metal effects and synergistic interactions of ferric stimulation on azo-dye decolorization by new indigenous Acinetobacter guillouiae Ax-9 and Rahnella aquatilis DX2bBioprocess Biosyst Eng3721722410.1007/s00449-013-0988-123743733Search in Google Scholar
Nor NM, Hadibarata T, Zubir MM, Lazim ZM. 2015. Mechanism of triphenylmethane Cresol Red degradation by Trichoderma harzianum M06. Bioprocess Biosyst Eng. 38:2167–2175.NorNMHadibarataTZubirMMLazimZM2015Mechanism of triphenylmethane Cresol Red degradation by Trichoderma harzianum M06Bioprocess Biosyst Eng382167217510.1007/s00449-015-1456-x26275435Search in Google Scholar
Patel TL, Patel BC, Kadam AA, Tipre DR, Dave SR. 2015. Application of novel consortium TSR for treatment of industrial dye manufacturing effluent with concurrent removal of ADMI, COD, heavy metals and toxicity. Water Sci Technol. 71:1293–1300.PatelTLPatelBCKadamAATipreDRDaveSR2015Application of novel consortium TSR for treatment of industrial dye manufacturing effluent with concurrent removal of ADMI, COD, heavy metals and toxicityWater Sci Technol711293130010.2166/wst.2015.07325945844Search in Google Scholar
Ramalho PA, Paiva S, Cavaco-Paulo A, Casal M. 2005. Azo reductase activity of intact saccharomyces cerevisiae cells is dependent on the Fre1p component of plasma membrane ferric reductase. Appl Environ Microbiol. 71:3882–3888.RamalhoPAPaivaSCavaco-PauloACasalM2005Azo reductase activity of intact saccharomyces cerevisiae cells is dependent on the Fre1p component of plasma membrane ferric reductaseAppl Environ Microbiol713882388810.1128/AEM.71.7.3882-3888.2005116898316000801Search in Google Scholar
Rodríguez-Sáiz M, Barredo JL, Moreno MA, Fernández-Cañón JM. 2001. Reduced function of a phenylacetate-oxidizing cytochrome p450 caused strong genetic improvement in early phylogeny of penicillin-producing strains. J Bacteriol. 183: 465–5471.Rodríguez-SáizMBarredoJLMorenoMAFernández-CañónJM2001Reduced function of a phenylacetate-oxidizing cytochrome p450 caused strong genetic improvement in early phylogeny of penicillin-producing strainsJ Bacteriol183465547110.1128/JB.183.19.5465-5471.20019543511544206Search in Google Scholar
Schaechter M. 2009. Encyclopedia of microbiology (Third edition). London (UK): Academic Press.SchaechterM2009Encyclopedia of microbiology (Third edition)London (UK)Academic PressSearch in Google Scholar
Sheikhi F, M Roayaei Ardakani, N. Enayatizamir and S. Rodriguez-Couto. 2012. The determination of assay for laccase of Bacillus subtilis WPI with two classes of chemical compounds as substrates. Indian J Microbiol. 52:701–707.SheikhiFMRoayaei ArdakaniN.Enayatizamir and S.Rodriguez-Couto2012The determination of assay for laccase of Bacillus subtilis WPI with two classes of chemical compounds as substratesIndian J Microbiol5270170710.1007/s12088-012-0298-3351666224293734Search in Google Scholar
Shimokawa T, Hirai M, Shoda M, Sugano Y. 2008. Efficient dye decolorization and production of dye decolorizing enzymes by the basidiomycete Thanatephorus cucumeris Dec 1 in a liquid and solid hybrid culture. J Biosci Bioeng. 106:481–487.ShimokawaTHiraiMShodaMSuganoY2008Efficient dye decolorization and production of dye decolorizing enzymes by the basidiomycete Thanatephorus cucumeris Dec 1 in a liquid and solid hybrid cultureJ Biosci Bioeng10648148710.1263/jbb.106.48119111644Search in Google Scholar
Solis M, Solis A, Perez HI, Manjarrez N, Flores M. 2012. Microbial decolouration of azo dyes: A review. Process Biochem. 47:1723–1748.SolisMSolisAPerezHIManjarrezNFloresM2012Microbial decolouration of azo dyes: A reviewProcess Biochem471723174810.1016/j.procbio.2012.08.014Search in Google Scholar
Song L, Shao Y, Ning S, Tan L. 2017. Performance of a newly isolated salt-tolerant yeast strain Pichia occidentalis G1 for degrading and detoxifying azo dyes. Bioresour Technol. 233:21–29.SongLShaoYNingSTanL2017Performance of a newly isolated salt-tolerant yeast strain Pichia occidentalis G1 for degrading and detoxifying azo dyesBioresour Technol233212910.1016/j.biortech.2017.02.06528258992Search in Google Scholar
Sun J, Jin J, Beger RD, Cerniglia CE, Chen H. 2017. Evaluation of metabolism of azo dyes and their effects on Staphylococcus aureus metabolome. J Ind Microbiol Biotechnol. 44:1471–1481.SunJJinJBegerRDCernigliaCEChenH2017Evaluation of metabolism of azo dyes and their effects on Staphylococcus aureus metabolomeJ Ind Microbiol Biotechnol441471148110.1007/s10295-017-1970-8586323928786013Search in Google Scholar
Sun S, Xie S, Chen H, Cheng Y. 2016. Genomic and molecular mechanisms for efficient biodegradation of aromatic dye. J Hazard Mater. 302:286–295.SunSXieSChenHChengY2016Genomic and molecular mechanisms for efficient biodegradation of aromatic dyeJ Hazard Mater30228629510.1016/j.jhazmat.2015.09.07126476316Search in Google Scholar
Waghmode TR, Kuradeb MB, Govindwar SP. 2011. Time dependent degradation of mixture of structurally different azo and non azo dyes by using Galactomyces geotrichum MTCC 1360. Int Biodeteri Biodegra. 65:479–486.WaghmodeTRKuradebMBGovindwarSP2011Time dependent degradation of mixture of structurally different azo and non azo dyes by using Galactomyces geotrichum MTCC 1360Int Biodeteri Biodegra6547948610.1016/j.ibiod.2011.01.010Search in Google Scholar
Xu M, Guo J, Kong X, Chen X, Sun G. 2007. Fe(III)-enhanced azo reduction by Shewanella decoloration is S12. Appl Microbiol Biotechnol. 74:1342–1349.XuMGuoJKongXChenXSunG2007Fe(III)-enhanced azo reduction by Shewanella decoloration is S12Appl Microbiol Biotechnol741342134910.1007/s00253-006-0773-z17216448Search in Google Scholar
Xu N, Qian K, Dong Y, Chen Y. 2014. Novel role of the Candida albicans ferric reductase gene CFL1 in iron acquisition, oxidative stress tolerance, morphogenesis and virulence. Res Microbiol. 165:252–261.XuNQianKDongYChenY2014Novel role of the Candida albicans ferric reductase gene CFL1 in iron acquisition, oxidative stress tolerance, morphogenesis and virulenceRes Microbiol16525226110.1016/j.resmic.2014.03.00124631590Search in Google Scholar
Yu Q, Dong Y, Xu N, Qian K. 2014. A novel role of the ferric reductase Cfl1 in cell wall integrity, mitochondrial function, and invasion to host cells in Candida albicans. FEMS Yeast Res. 14:1037–1047.YuQDongYXuNQianK2014A novel role of the ferric reductase Cfl1 in cell wall integrity, mitochondrial function, and invasion to host cells in Candida albicansFEMS Yeast Res141037104710.1111/1567-1364.1219425130162Search in Google Scholar
Zhan X, Carpenter RA, Ellis HR. 2008. Catalytic importance of the substrate binding order for the FMNH2-dependent alkanesulfonate monooxygenase enzyme. Biochemistry 47:2221–2230.ZhanXCarpenterRAEllisHR2008Catalytic importance of the substrate binding order for the FMNH2-dependent alkanesulfonate monooxygenase enzymeBiochemistry472221223010.1021/bi701853w18198899Search in Google Scholar
Zhao D, Zhang X, Cui D, Zhao M. 2012. Characterisation of a novel white laccase from the deuteromycete fungus Myrothecium verrucaria NF-05 and its decolourisation of dyes. PLoS One 7:e38817.ZhaoDZhangXCuiDZhaoM2012Characterisation of a novel white laccase from the deuteromycete fungus Myrothecium verrucaria NF-05 and its decolourisation of dyesPLoS One7e3881710.1371/journal.pone.0038817337105022715414Search in Google Scholar
