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Figure 1:

Genome ploidy estimation and contaminant analysis of the Meloidogyne luci SI-Smartno genome assembly. (A) Smudgeplots showing the coverage and distribution of k-mer pairs that fit to triploid genome model. (B) Blobplot showing the lack of contamination of assembly by foreign (non-Nematoda) genetic material.
Genome ploidy estimation and contaminant analysis of the Meloidogyne luci SI-Smartno genome assembly. (A) Smudgeplots showing the coverage and distribution of k-mer pairs that fit to triploid genome model. (B) Blobplot showing the lack of contamination of assembly by foreign (non-Nematoda) genetic material.

Summary statistics of the Meloidogyne luci genome assembly compared to the genome assemblies of other Meloidogyne spp. currently available in DDBJ/ENA/GenBank.

Species Strain/isolate desig-nation Accession (DDBJ/ENA/GenBank) Assembly size (Mb) Genome coverage Number of contigs/scaffolds N50 GC content (%) Number of pre-dicted genes CEGMA score (% complete) Reference
M. luci SI-Smartno V13 ERS3574357 209.16 200 327 1,711,905 30.2 n/a 95.2 This study
M. incognita Morelos GCA_000180415.1 82.10 5 9,538 12,786 31.4 19,212 77 Abad et al. (2008)
M. incognita W1 GCA_003693645.1 121.96 100 33,351 16,520 30.6 24,714 83 Szitenberg et al. (2017)
M. incognita V3 GCA_900182535.1 183.53 100 12,091 38,588 29.8 45,351 97 Blanc-Mathieu et al. (2017)
M. javanica VW4 GCA_003693625.1 150.35 300 34,316 14,128 30.2 26,917 90 Szitenberg et al. (2017)
M. javanica GCA_900003945.1 235.80 100 31,341 10,388 29.9 98,578 96 Blanc-Mathieu et al. (2017)
M. floridensis GCA_000751915.1 96.67 200 58,696 3,698 30.0 n/a 58.1 Lunt et al. (2014)
M. floridensis SJF1 GCA_003693605.1 74.85 100 8,887 13,261 30.2 14,144 84 Szitenberg et al. (2017)
M. arenaria HarA GCA_003693565.1 163.75 100 46,436 10,504 30.3 30,308 91 Szitenberg et al. (2017)
M. arenaria GCA_900003985.1 258.07 100 26,196 16,462 29.8 103,001 95 Blanc-Mathieu et al. (2017)
M. arenaria A2-O GCA_003133805.1 284.05 60 2,224 204,551 30.0 n/a 94.8 Sato et al. (2018)
M. enterolobii L30 GCA_003693675.1 162.97 200 42,008 10,552 30.2 31,051 81 Szitenberg et al. (2017)
M. graminicola IARI GCA_002778205.1 38.19 180 4,304 20,482 23.1 10,196 84.3 Somvanshi et al. (2018)
M. hapla VW9 GCA_000172435.1 53.01 10 3,450 37,608 27.4 14,420 94.8 Opperman et al. (2008)
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