A loop-mediated isothermal amplification assay for the plant-parasitic nematode Aphelenchoides besseyi in rice seedlings

Craig J. P. , Bekal S. , Niblack T. , Domier L. and Lambert K. N. 2009. Evidence for horizontally transferred genes involved in the biosynthesis of vitamin B₁, B₅, and B₇ in Heterodera glycines . Journal of Nematology 41:281–90. Search in Google Scholar

Danchin E. G. J. , Rosso M.-N. , Vieira P. , de Almeida-Engler J. , Coutinho P. M. , Henrissat B. and Abad P. 2010. Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 107:17651–6.10.1073/pnas.1008486107295511020876108 Search in Google Scholar

Devran Z. , Tülek A. , Mıstanoğlu İ. , Çiftçiğil T. H. and Özalp T. 2017. A rapid molecular detection method for Aphelenchoides besseyi from rice tissues. Australasian Plant Pathology 46 (1):43–8.10.1007/s13313-016-0452-1 Search in Google Scholar

Ferris H. 2018. Aphelenchoides besseyi. Nemaplex, University of California, Davis, CA. available at: http://plpnemweb.ucdavis.edu/nemaplex (accessed March 23, 2018). Search in Google Scholar

Floyd R. , Abebe E. , Papert A. and Blaxter M. 2002. Molecular barcodes for soil nematode identification. Molecular Ecolology 11 (4):839–50.10.1046/j.1365-294X.2002.01485.x Search in Google Scholar

Franklin M. and Siddiqi M. 1972. Aphelenchoides besseyi Set 1, No. 4. in descriptions of plant-parasitic nematodes. Commonwealth Institute of Helminthology: St. Albans. Search in Google Scholar

Fukano H. 1962. Ecological studies on white-tip disease of rice plant caused by Aphelenchoides besseyi Christie and its control. Bulletin Fukuoka of Agricultural Experimental Station 18:1–108. Search in Google Scholar

Goto M. , Honda E. , Ogura A. , Nomoto A. and Hanaki K.-I. 2009. Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46:167–72.10.2144/00011307219317660 Search in Google Scholar

Hsieh S. H. , Lin C. J. and Chen P. 2012. Sexual compatibility among different host-originated isolates of Aphelenchoides besseyi and the inheritance of the parasitism. PloS one 7 (7):e40886.10.1371/journal.pone.0040886339987722815854 Search in Google Scholar

Huang C. , Huang S. and Chiang Y. 1979. Mode of reproduction and sex ratio of rice white-tip nematode, Aphelenchoides besseyi . Nematologica 25 (2):255–60.10.1163/187529279X00271 Search in Google Scholar

Husnik F. and McCutcheon J. P. 2018. Functional horizontal gene transfer from bacteria to eukaryotes. Nature Reviews Microbiology 16 (2):67.10.1038/nrmicro.2017.13729176581 Search in Google Scholar

IPPC . 2016. Aphelenchoides besseyi, A. fragariae and A. ritzemabosi. in Diagnostic Protocols: International Standard for Phytosanitary Measures (ISPM) 27, ANNEX 17, Food and Agriculture Organization of the United Nations (FAO), Rome. Search in Google Scholar

Kikuchi T. , Aikawa T. , Oeda Y. , Karim N. and Kanzaki N. 2009. A rapid and precise diagnostic method for detecting the pinewood nematode Bursaphelenchus xylophilus by loop-mediated isothermal amplification. Phytopathology 99 (12):1365–9.10.1094/PHYTO-99-12-136519900002 Search in Google Scholar

Leal I. , Allen E. , Foord B. , Anema J. , Reisle C. , Uzunovic A. , Varga A. and James D. 2015. Detection of living Bursaphelenchus xylophilus in wood, using reverse transcriptase loop-mediated isothermal amplification (RT-LAMP). Forest Pathology 45 (2):134–48.10.1111/efp.12149 Search in Google Scholar

Lin B. , Wang H. , Zhuo K. and Liao J. 2016. Loop-mediated isothermal amplification for the detection of Tylenchulus semipenetrans in soil. Plant Disisease 100 (5):877–83.10.1094/PDIS-07-15-0801-RE30686144 Search in Google Scholar

McCuiston J. L. , Hudson L. C. , Subbotin S. A. , Davis E. L. and Warfield C. Y. 2007. Conventional and PCR detection of Aphelenchoides fragariae in diverse ornamental host plant species. Journal of Nematology 39 (4):343–55. Search in Google Scholar

Niu J. , Guo Q. , Jian H. , Chen C. , Yang D. , Liu Q. and Guo Y. 2011. Rapid detection of Meloidogyne spp. by LAMP assay in soil and roots. Crop Protection 30 (8):1063–9.10.1016/j.cropro.2011.03.028 Search in Google Scholar

Niu J. , Jian H. , Guo Q. , Chen C. , Wang X. , Liu Q. and Guo Y. 2012. Evaluation of loop-mediated isothermal amplification (LAMP) assays based on 5 S rDNA-IGS2 regions for detecting Meloidogyne enterolobii . Plant Pathology 61 (4):809–19.10.1111/j.1365-3059.2011.02562.x Search in Google Scholar

Notomi T. , Okayama H. , Masubuchi H. , Yonekawa T. , Watanabe K. , Amino N. and Hase T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Research 28 (12):e63.10.1093/nar/28.12.e6310274810871386 Search in Google Scholar

OEPP/EPPO . 1992. Quarantine procedure méthode de quarantaine. EPPO Bulliten 22 (2):217–8.10.1111/j.1365-2338.1992.tb00484.x Search in Google Scholar

Paganini J. , Campan-Fournier A. , Da Rocha M. , Gouret P. , Pontarotti P. , Wajnberg E. , Abad P. and Danchin E. G. J. 2012. Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. PLOS One 7 (11):e50875.10.1371/journal.pone.0050875351127223226415 Search in Google Scholar

Peng H. , Peng D. , Hu X. , He X. , Wang Q. , Huang W. and He W. 2012. Loop-mediated isothermal amplification for rapid and precise detection of the burrowing nematode, Radopholus similis, directly from diseased plant tissues. Nematology 14 (8):977–86.10.1163/156854112X638415 Search in Google Scholar

Peng H. , Long H. , Huang W. , Liu J. , Cui J. , Kong L. , Hu X. , Gu J. and Peng D. 2017. Rapid, simple and direct detection of Meloidogyne hapla from infected root galls using loop-mediated isothermal amplification combined with FTA technology. Scientific repeports 7:44853. Search in Google Scholar

Powers T. 2004. Nematode molecular diagnostics: from bands to barcodes. Annual Review of Phytopathology 42:367–83.10.1146/annurev.phyto.42.040803.14034815497206 Search in Google Scholar

Rybarczyk-Mydłowska K. , Mooyman P. , van Megen H. , van den Elsen S. , Vervoort M. , Veenhuizen P. , van Doorn J. , Dees R. , Karssen G. and Bakker J. 2012. Small subunit ribosomal DNA-based phylogenetic analysis of foliar nematodes (Aphelenchoides spp.) and their quantitative detection in complex DNA backgrounds. Phytopathology 102 (12):1153–60.10.1094/PHYTO-05-12-0114-R22913411 Search in Google Scholar

Sánchez-Monge A. , Janssen T. , Fang Y. , Couvreur M. , Karssen G. and Bert W. 2017. mtCOI successfully diagnoses the four main plant-parasitic Aphelenchoides species (Nematoda: Aphelenchoididae) and supports a multiple origin of plant-parasitism in this paraphyletic genus. European Journal of Plant Pathology 148 (4):853–66.10.1007/s10658-016-1141-1 Search in Google Scholar

Scholl E. H. , Thorne J. L. , McCarter J. P. and Bird D. McK. 2003. Horizontally transferred genes in plant parasitic nematodes: a high-throughput genomic approach. Genome Biology 4:R39.1–R39.12.10.1186/gb-2003-4-6-r3919361812801413 Search in Google Scholar

Togashi K. and Hoshino S. 2003. Trade-off between dispersal and reproduction of a seed-borne nematode, Aphelenchoides besseyi, parasitic on rice plants. Nematology 5 (6):821–9.10.1163/156854103773040727 Search in Google Scholar

Tzeng C. and Lin Y. 2005. The intraspecific variation of Aphelenchoides besseyi populations in Taiwan. Plant Pathology Bulletin 14 (1):67–75. Search in Google Scholar

Wang K. , Tsay T. and Lin Y. 1993. The occurrence of Aphelenchoides besseyi on strawberry and its ecology in Taiwan. Plant Protection Bulliten 35 (1):14–29. Search in Google Scholar

Wu G.-L. , Kuo T.-H. , Tsay T.-T. , Tsai I. J. and Chen P. J. 2016. Glycoside hydrolase (GH) 45 and 5 candidate cellulases in Aphelenchoides besseyi isolated from bird’s-nest fern. Plos One 11 (7):e0158663.10.1371/journal.pone.0158663493854627391812 Search in Google Scholar

Wu H.-Y. 2011. The occurrence of white tip of rice in the northern part of Taiwan and improvement of rice seed treatment method. Bulletin of Taoyuan District Agricultural Research and Extension Station 70:51–60. Search in Google Scholar

Youssef M. M. A. 2014. The leaf and bud nematode, Aphelenchoides besseyi, its identification, economic importance and control measures. A review. Middle East Journal of Agriculture Research 3 (3):461–4. Search in Google Scholar

Yu G. Y. 2018. Development and application of a rapid detection assay of white-tip disease and bakanae disease on rice. master thesis, National Taiwan University, Taipei City, Taiwan. Search in Google Scholar

Yu P. and Tsay T. 2004. Occurrence of a foliar nematode disease of fern in Taiwan. Plant Protection Bulliten 13 (1):35–44. Search in Google Scholar

Zhou Q. , Cai Y. , Gu J. , Wang X. and Chen J. 2017. Rapid and sensitive detection of Meloidogyne mali by loop-mediated isothermal amplification combined with a lateral flow dipstick. European Journal of Plant Pathology 148 (4):755–69.10.1007/s10658-016-1130-4 Search in Google Scholar