This work is licensed under the Creative Commons Attribution 4.0 International License.
BankevichA., NurkS., AntipovD., GurevichA. A., DvorkinM., KulikovA. S., Lesin, V. M., NikolenkoS. I., PhamS., PrjibelskiA. D., PyshkinA. V., SirotkinA. V., VyahhiN., TeslerG., AlekseyevM. A. and PevznerP. A.2012. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. 19:455–77.10.1089/cmb.2012.0021334251922506599Search in Google Scholar
CabanettesF. and KloppC.2018. D-GENIES: dot plot large genomes in an interactive, efficient and simple way. 6:e4958.Search in Google Scholar
DobinA., DavisC. A., SchlesingerF., DrenkowJ., ZaleskiC., JhaS., BatutP., ChaissonM. and GingerasT. R.2013. STAR: ultrafast universal RNA-seq aligner. 29:15–21.10.1093/bioinformatics/bts635353090523104886Search in Google Scholar
GurevichA., SavelievV., VyahhiN. and TeslerG.2013. QUAST: quality assessment tool for genome assemblies. 29:1072–5.10.1093/bioinformatics/btt086362480623422339Search in Google Scholar
HaegemanA., ElsenA., WaeleD. D. and GheysenG.2010. Emerging molecular knowledge on Radopholus similis, an important nematode pest of banana. 11:315–23.10.1111/j.1364-3703.2010.00614.x664033220447280Search in Google Scholar
HaegemanA., JacobJ., VanholmeB., KyndtT. and GheysenG.2008. A family of GHF5 endo-1,4-beta-glucanases in the migratory plant-parasitic nematode Radopholus similis. 57:581–90.10.1111/j.1365-3059.2007.01814.xSearch in Google Scholar
HaegemanA., VanholmeB. and GheysenG.2009. Characterization of a putative endoxylanase in the migratory plant-parasitic nematode Radopholus similis. 10:389–401.10.1111/j.1364-3703.2009.00539.x664023119400841Search in Google Scholar
HoffK. J., LangeS., LomsadzeA., BorodovskyM. and StankeM.2016. BRAKER1: Unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS. 32:767–9.10.1093/bioinformatics/btv661607816726559507Search in Google Scholar
HuangX., XuC.-L., YangS.-H., LiJ.-Y., WangH.-L., ZhangZ.-X., ChenC. and XieH.2019. Life-stage specific transcriptomes of a migratory endoparasitic plant nematode, Radopholus similis elucidate a different parasitic and life strategy of plant parasitic nematodes. 9:6277.Search in Google Scholar
JacobJ. E., VanholmeB., Van LeeuwenT. and GheysenG.2009. A unique genetic code change in the mitochondrial genome of the parasitic nematode Radopholus similis. 2:192.10.1186/1756-0500-2-192276139919778425Search in Google Scholar
JacobJ., MitrevaM., VanholmeB. and GheysenG.2008. Exploring the transcriptome of the burrowing nematode Radopholus similis. 280:1–17.10.1007/s00438-008-0340-718386064Search in Google Scholar
KumarS., JonesM., KoutsovoulosG., ClarkeM. and BlaxterM.2013. Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots. 4:237.Search in Google Scholar
KurtzS., PhillippyA., DelcherA. L., SmootM., ShumwayM., AntonescuC. and SalzbergS. L.2004. Versatile and open software for comparing large genomes. 5:R12.10.1186/gb-2004-5-2-r1239575014759262Search in Google Scholar
NurkS., MeleshkoD., KorobeynikovA. and PevznerP. A.2017. metaSPAdes: a new versatile metagenomic assembler. 27:824–34.10.1101/gr.213959.116541177728298430Search in Google Scholar
SimãoF. A., WaterhouseR. M., IoannidisP., KriventsevaE. V. and ZdobnovE. M.2015. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. 31:3210–2.10.1093/bioinformatics/btv35126059717Search in Google Scholar