Training set | 10% | 20% | 50% | 80% |
---|---|---|---|---|
Default model | 73.56% | 73.60% | 73.11% | 69.94% |
Forest | 80.69% | 96.57% | 96.52% | 96.72% |
GLMNet | 82.88% | 82.58% | 94.98% | 93.26% |
Boosting | 95.45% | 95.22% | 96.68% | 95.18% |
MaxEnt | 86.95% | 90.44% | 92.89% | 93.83% |
SLDA | 73.56% | 74.90% | 75.66% | 88.25% |
SVM | 94.29% | 95.80% | 96.75% | 98.07% |
Tree | 94.38% | 95.56% | 95.13% | 93.83% |
Training set | 10% | 20% | 50% | 80% | ||||
---|---|---|---|---|---|---|---|---|
Algorithm | No | Yes | No | Yes | No | Yes | No | Yes |
Forest | 26.95% | 100.00% | 89.95% | 98.95% | 90.23% | 98.84% | 89.74% | 99.72% |
GLMNet | 35.55% | 99.88% | 34.37% | 99.87% | 88.22% | 97.46% | 88.46% | 95.32% |
Boosting | 93.34% | 96.21% | 95.43% | 95.15% | 96.26% | 96.83% | 90.38% | 97.25% |
MaxEnt | 51.14% | 99.82% | 64.35% | 99.80% | 73.85% | 99.89% | 79.49% | 100.00% |
SLDA | 0 | 100.00% | 11.88% | 97.51% | 44.25% | 87.21% | 60.90% | 100.00% |
SVM | 84.74% | 97.72% | 93.78% | 96.52% | 95.69% | 97.15% | 97.44% | 98.35% |
Tree | 90.10% | 95.92% | 91.04% | 97.18% | 88.79% | 97.46% | 91.03% | 95.04% |
Search string | Number of items | |
---|---|---|
# 1 | TS=“her 2” | 8,542 |
# 2 | String 1 | 26,972 |
# 3 | #2 AND #1 | 6,396 |
# 4 | #1 NOT #3 | 2,146 |
Algorithm | Coverage | Coverage Yes | Coverage No | Accuracy | Recall for the Yes category | Recall for the No category |
---|---|---|---|---|---|---|
SVM and Boosting | 2,131 | 1,620 | 511 | 99.06% | 99.69% | 97.06% |
Consensus (Number of algorithms) | Coverage | Coverage No | Coverage Yes | Accuracy | Recall for the Yes category | Recall for the No category |
---|---|---|---|---|---|---|
≥ 4 | 2,330 | 616 | 1,714 | 87.51% | 99.88% | 53.08% |
≥ 5 | 2,045 | 336 | 1,709 | 93.99% | 99.94% | 63.69% |
≥ 6 | 1,825 | 162 | 1,663 | 98.19% | 100.00% | 79.63% |
≥ 7 | 1,606 | 11 | 1,595 | 99.32% | 100.00% | N/A |