[
Atabey E., L. Nazik and K. Tork. 2002. Oylat Magarasi Cokel Kayalarinin Sedimentalojisi. MTA Dergisi. 123–124: 91–98.
]Search in Google Scholar
[
Baker G.C., J.J. Smith and D.A. Cowan. 2003. Review and reanalysis of domain-specific 16S primers. J. Microbiol. Methods. 55: 541–555.10.1016/j.mimet.2003.08.009
]Search in Google Scholar
[
Barton H.A., N.M. Taylor, M.P. Kreate, A.C. Springer, S.A. Oehrle and J.L. Bertog. 2007. The impact of host rock geochemistry on bacterial community structure in oligotrophic cave environments. Int. J. Speleol. 36: 5.10.5038/1827-806X.36.2.5
]Search in Google Scholar
[
Barton H.A., N.M. Taylor and B.R. Lubbers. 2006. DNA extraction from low-biomass carbonaterock: an improved method with reduced contamination and the lowbiomass contaminant database. J. Microbiol. Methods. 66: 21–31.10.1016/j.mimet.2005.10.005
]Search in Google Scholar
[
Borsodi A.K., Knab M., Kreet M., Makk J., Marialigeti K., Eross A., Madl-Szonyi J. 2012, Biofilm bacterial communities inhabiting the cave walls of the Buda Thermal Karst System, Hungary, Geomic. Journal, 29: 611–627.
]Search in Google Scholar
[
Chelius M.K. and J.C. Moore. 2004. Molecular phylogenetic analysis of Archaea and Bacteria in Wind Cave, South Dakota. Geomicrobiol. J. 21: 123–134.
]Search in Google Scholar
[
Cole J.R., B. Chai, R.J. Farris, Q. Wang, S.A. Kulam, D.M. McGarrell, G.M. Garrity and J.M. Tiedje. 2005. The Ribosomal Database Project (RDP-II): sequences and tools for high throughput rRNA analysis. Nucleic Acids Res. 33: D294–D296.10.1093/nar/gki038
]Search in Google Scholar
[
DeSantis T.Z. and P. Hugenholtz. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72(7): 5069–5072.
]Search in Google Scholar
[
Edgar R.C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19): 2460–2461.10.1093/bioinformatics/btq461
]Search in Google Scholar
[
Holmes A.J., N.A. Tujula, M. Holley, A. Contos, J.M. James, P. Rogers, M.R. Gillings. 2001. Phyogenetic structure of unusual aquatic microbial formations in Nullarbor Cave, Australia. Environ. Microbiol. 3: 256–264.
]Search in Google Scholar
[
Huber T., G. Faulkner and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317–2319.10.1093/bioinformatics/bth226
]Search in Google Scholar
[
Ivanova V., I. Tomova, A. Kamburov, A. Tomova, E. Vasileva-Tonkova and M. Kambourova. 2013. High phylogenetic diversity of bacteria in the area of prehistoric paintings in Magura Cave, Bulgaria. J. Cave and Karst. Studies 75(3): 218–228.
]Search in Google Scholar
[
Groth I., R. Vettermann, B. Schuetze, P. Schumann and C. Sáiz-Jiménez. 1999. Actinomycetes in karstic caves of northern Spain (Altamira and Tito Bustillo). J. Microbiol. Methods. 36: 115–122.10.1016/S0167-7012(99)00016-0
]Search in Google Scholar
[
Ketin I. 1966. Tectonic units of Anatolia (Asia Minor). Bull MTA. 66: 23–34.
]Search in Google Scholar
[
Legatzki A, M. Ortiz, J.W. Neilson, R.R. Casavant, M.W. Palmer, C. Rasmussen, B.M. Pryor, L.S. Pierson and R.M. Maier. 2012. Factors influencing observed variations in the structure of bacterial communities on calcite formations in Kartchner Caverns, AZ, USA Geomicrobiol J. 29: 422–434.10.1080/01490451.2011.581326
]Search in Google Scholar
[
Macalady J.L., E.H. Lyon, B. Koffman, L.K. Albertson, K. Meyer, S. Galdenzi and S. Mariani. 2006. Dominant microbial populations in limestone-corroding stream biofilms, Frasassi Cave system, Italy. Appl. Environ. Microbiol. 72: 5596–5609.10.1128/AEM.00715-06153871116885314
]Search in Google Scholar
[
Nakayama J., J. Jiang, K. Watanabe, K. Chen, H. Ninxin, K. Matsuda, T. Kurakawa, H. Tsuji, K. Sonomoto and Y. Lee. 2013. Up to species-level community analysis of human gut microbiota by 16S RrNA amplicon pyrosequencing. Biosci Microbiota Food Health. 32(2): 69–76.10.12938/bmfh.32.69403432124936364
]Search in Google Scholar
[
Ortiz M., J.W. Neilson, W.M. Nelson, A. Legatzki, A. Byrne, Y. Yu, R.A. Wing, C.A. Soderlund, M.B. Pryor, L.S. Pierson and R.M. Maier. 2012. Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ. Microb. Ecol. 65: 371–383.
]Search in Google Scholar
[
Ortiz M., A. Legatzki, J.W. Neilson, B. Fryslie, W.M. Nelson, R.A. Wing, C.A. Soderlund, M.B. Pryor and R.M. Maier. 2014. Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. The ISME Journal. 8: 478–491.10.1038/ismej.2013.159390682024030597
]Search in Google Scholar
[
Pasic L., B. Kovce, B. Sket and B. Herzog-Velikonnja. 2010. Diversity of microbial communities colonizing the walls of a karstic cave in Slovenia. FEMS Microbiol. Ecol. 71: 50–60.10.1111/j.1574-6941.2009.00789.x19817862
]Search in Google Scholar
[
Portillo M.C., C. Saiz-Jimeney and J.M. Gonzalez. 2009. Molecular characterization of total and metabolically active bacterial communities of “white colonizations” in the Altamira Cave, Spain. Res. Microbiol. 160: 41–47.10.1016/j.resmic.2008.10.00218984039
]Search in Google Scholar
[
Schabereiter-Gurtner C., C. Saiz-Jimenez, G. Pinar, W. Lubitz and S. Rolleke. 2002. Phylogenetic 16S rRNA analysis reveals the presence of complex and partly unknown bacterial communities in Tito Bustillo Cave, Spain, and on its Paleolithic paintings. Environ. Microbiol. 4: 392–400.10.1046/j.1462-2920.2002.00303.x12123475
]Search in Google Scholar
[
Schabereiter-Gurtner C., C. Saiz-Jimenez, G. Pinar, W. Lubitz and S. Rolleke. 2004. Phylogenetic diversity of bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llon|.n and La Garma). FEMS Microbiol. Eco. 47(2): 235–247.
]Search in Google Scholar
[
Wang Q., G.M. Garrity, J.M. Tiedje and J.R. Cole. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ10.1128/AEM.00062-07195098217586664
]Search in Google Scholar
[
. Microbiol. 73: 5261–5267.
]Search in Google Scholar
[
Weisburg W.G., S.M. Barns, D.A. Pelletier and D.J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173: 697–70310.1128/jb.173.2.697-703.19912070611987160
]Search in Google Scholar
[
Wright E.S., L.S. Yilmaz and D.R. Noguera. 2012. DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Appl. Environ. Microbiol. 78: 717–725.
]Search in Google Scholar
[
Wu Y., Tan L., Liu W., Wang B., Wang J., Cai Y., et al. 2015. Profiling bacterial diversity in a limestone cave of the western Loess Plateau of China. Front. Microbiol. 6: 244. 10.3389/fmicb.2015.0024410.3389/fmicb.2015.00244437828825870592
]Search in Google Scholar
[
Zhou J.P., Y.Q. Gu, C.S. Zou and M.H. Mo. 2007. Phylogenetic diversity of bacteria in an earth-cave in Guizhou Province, Southwest of China. J. Microbiol. 45: 105–112.
]Search in Google Scholar
