No. | Gene | Gene position | Difference of amino acid position | No. | Gene | Gene position | Difference of amino acid position | No. | Gene | Gene position | Difference of amino acid position |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | PE_PGRS3a | 331866– | 567 | 10 | PE_PGRS20.2 | 1193553– | 1,4,11–14,18, | 17 | PE_PGRS | 2761378– | 49–51,53, |
334616 | 1194758 | 20–22,25,30,33, | 43a | 2762805 | 57–59,61, | ||||||
36,39–41,43–17, | 79,82,85– | ||||||||||
49–50,52,56,59, | 87,90,92– | ||||||||||
65,68–71,74–75, | 93,97 | ||||||||||
80,83–84,86,90, | |||||||||||
94–96 | |||||||||||
2 | PE_PGRS4 | 337829– | 253 | 11 | 16S rRNA | 1471256– | Nonprotein coding | 18 | Lhr | 3621834– | 796 |
340333 | 1472792 | 3626375 | |||||||||
3 | JTY_0628 | 707570– | 185 | 12 | PE_PGRS30 | 1840495– | 455–156,458– | 19 | sdliB | 3693240– | 88 |
708175 | 1843551 | 459,463,465, | 3694031 | ||||||||
467–168,473 | |||||||||||
4 | PE_PGRS10 | 840318– | 255 | 13 | wag22b | 1973263– | 500 | 20 | JTY 3396 | 3700080– | Protein |
842999 | 258 | 1975674 | 3700778 | pattern | |||||||
changes | |||||||||||
5 | JTY_0977 | 1066242– | 4–5 | 14 | PE_PGRS41 | 2650648– | 218 | 21 | PE_PGRS | 3908313– | 515,520, |
1067099 | 2651730 | 54 | 3914465 | 537,561, 564,570 | |||||||
6 | PE_PGRS16 | 1092510– | 441–442,457, | 15 | rpfE | 2709525– | Protein pattern | 22 | PE_PGRS | 3923290– | 654,656– |
1094003 | 482,485–486, | 2710121 | changes | 57 | 3925359 | 659,661– | |||||
491–497 | 683 | ||||||||||
7 | PEPGRS16 | 1093960– | Protein pattern | 16 | PE_PGRS43b | 2757960– | Protein pattern | 23 | JTY_3753 | 4105089– | 178,214 |
1095282 | changes | 2761286 | changes | 4106411 | |||||||
8 | PE_PGRS19 | 1190568– | 256,265,268, | ||||||||
1192583 | 277,302 | ||||||||||
9 | PE_PGRS20.1 | 1192916– | 197,201,203– | ||||||||
1193530 | 205 |
Gene | Position | BCG 172 Tokyio | |
---|---|---|---|
Thai | Japanese | ||
GenBank: CP014566 | GenBank: AP010918 | ||
253,186 | A | A | |
JTY_0567 | 644,562 | T | T |
765,342 | C | C | |
Intergenic | 2,717,585 | C | C |
JTY_3278 | 3,606,131 | G | G |
JTY_3735 | 4,087,391 | G | G |
RD in VNTR locus | Sequence from 5’→3’ | Number of repeats |
---|---|---|
0557/intergenic ( | GTCGAGCCCGACGACGATGCAGAGCGCGCAGCGCGATGAGAAGGAGTTGGGCGGTTAG (58 bp) | 3 |
0580/intergenic ( | TGCGCCGACGACGATGCAGAGCGTAGCGATGAGGTGGGGGCACCACCCGCTTGCGGGGGAGAGTGGCGCTGATGACC (77 bp) | 3 |
3155/intergenic ( | CGACCCGCGGCGCCCGGTCCCCGCGCTTGCGATCGCCACTGGCCCTGATGGTGG (54 bp) | 4 |
3336/intergenic(Rv2980- | TGCGCCGGGCGCGGCGGGTCGGCACCATCGGGCTAAGTGCCGATCGCAAGCGCGGCGCT (177 bp = 59 bpx3) | 6 |
3820/intergenic ( | CGATGCGGGCCGCGTAGCGGCCCGAGGAGGAGCCGGGCAATCCAGCCTGAGCCCGGTGA (59 bp) | 3 |
4052 ( | CCATCAGCCCCGTGGCGATCGCAAACCCCGCGCCTGGCGACAATGCGGCCCGCAAAACGGGCCGAGGAGGAGCCAGGCAATCACCCCAGAGCCGGGTGCAGCGGGTCGCCA (111 bp) | 4 |
4155( | TCGCGAGCCCGGCGCAGCCGGGCGAAGCGGGTCGGCACGCATCGGACCCCGTGACGA (57 bp) | 11 |