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Adlhoch C, Kaiser M, Loewa A, Ulrich M, Forbrig C, Adjogoua EV, Akoua-Koffi C, Couacy-Hymann E, Leendertz SA, Rietschel W, et al. Diversity of parvovirus 4-like viruses in humans, chimpanzees, and monkeys in hunter-prey relationships. Emerg Infect Dis. 2012 May;18 (5):859–862. https://doi.org/10.3201/eid1805.111849AdlhochCKaiserMLoewaAUlrichMForbrigCAdjogouaEVAkoua-KoffiCCouacy-HymannELeendertzSARietschelWDiversity of parvovirus 4-like viruses in humans, chimpanzees, and monkeys in hunter-prey relationships.Emerg Infect Dis.2012May;18 (5):859–862.https://doi.org/10.3201/eid1805.111849Search in Google Scholar
Altan E, Delaney MA, Colegrove KM, Spraker TR, Wheeler EA, Deng X, Li Y, Gulland FMD, Delwart E. Complex virome in a mesenteric lymph node from a Californian sea lion (Zalophus Californianus) with polyserositis and steatitis. Viruses. 2020 Jul 23;12 (8):793. https://doi.org/10.3390/v12080793AltanEDelaneyMAColegroveKMSprakerTRWheelerEADengXLiYGullandFMDDelwartE.Complex virome in a mesenteric lymph node from a Californian sea lion (Zalophus Cali-fornianus) with polyserositis and steatitis.Viruses.2020Jul;12 (8):793.https://doi.org/10.3390/v12080793Search in Google Scholar
Başcı S, Bakırtaş M, Yiğenoğlu TN, Uncu Ulu B, Batgi H, Yıldız J, Dal MS, Kızıl Çakar M, Altuntaş F. The outcome of diffuse large B cell lymphoma patients in adolescent and young adult age group. J Adolesc Young Adult Oncol. 2021 Aug;10 (4):483–487. https://doi.org/10.1089/jayao.2020.0145BaşcıSBakırtaşMYiğenoğluTNUncu UluBBatgiHYıldızJDalMSKızıl ÇakarMAltuntaşF.The outcome of diffuse large B cell lymphoma patients in adolescent and young adult age group.J Adolesc Young Adult Oncol.2021Aug;10 (4):483–487.https://doi.org/10.1089/jayao.2020.0145Search in Google Scholar
Bergmann V, Kiupel H. [Inclusion body enteritis in pigeons caused by adenovirus and parvovirus] (in German). Arch Exp Veterinarmed. 1982;36 (3):445–453.BergmannVKiupelH.[Inclusion body enteritis in pigeons caused by adenovirus and parvovirus] (in German).Arch Exp Veterinarmed.1982;36 (3):445–453.Search in Google Scholar
Brown KE. The expanding range of parvoviruses which infect humans. Rev Med Virol. 2010 Jul;20 (4):231–244. https://doi.org/10.1002/rmv.648BrownKE.The expanding range of parvoviruses which infect humans.Rev Med Virol.2010Jul;20 (4):231–244.https://doi.org/10.1002/rmv.648Search in Google Scholar
Buchfink B, Reuter K, Drost HG. Sensitive protein alignments at tree-of-life scale using DIAMOND. Nat Methods. 2021 Apr;18 (4): 366–368. https://doi.org/10.1038/s41592-021-01101-xBuchfinkBReuterKDrostHG.Sensitive protein alignments at tree-of-life scale using DIAMOND.Nat Methods.2021Apr;18 (4):366–368.https://doi.org/10.1038/s41592-021-01101-xSearch in Google Scholar
Canuti M, Bouchard, Rodrigues B, Whitney HG, Hopson M, Gilroy C, Stenson G, Dufour SC, Lang AS, Verhoeven JTP. New-lavirus, a novel, highly prevalent, and highly diverse protoparvovirus of foxes (Vulpes spp.). Viruses. 2021 Sep;13 (10):1969. https://doi.org/10.3390/v13101969CanutiMBouchardRodriguesBWhitneyHGHopsonMGilroyCStensonGDufourSCLangASVerhoevenJTP.New-lavirus, a novel, highly prevalent, and highly diverse protoparvovirus of foxes (Vulpes spp.).Viruses.2021Sep;13 (10):1969.https://doi.org/10.3390/v13101969Search in Google Scholar
Cotmore SF, Agbandje-McKenna M, Canuti M, Chiorini JA, Eis-Hubinger AM, Hughes J, Mietzsch M, Modha S, Ogliastro M, Pénzes JJ, et al.; Ictv Report Consortium. ICTV virus taxonomy profile: Parvoviridae. J Gen Virol. 2019 Mar;100 (3):367–368. https://doi.org/10.1099/jgv.0.001212CotmoreSFAgbandje-McKennaMCanutiMChioriniJAEis-HubingerAMHughesJMietzschMModhaSOgliastroMPénzesJJIctv Report ConsortiumICTV virus taxonomy profile: Parvoviridae.J Gen Virol.2019Mar;100 (3):367–368.https://doi.org/10.1099/jgv.0.001212Search in Google Scholar
de Oliveira Santana W, Silveira VP, Wolf JM, Kipper D, Echeverrigaray S, Canal CW, Truyen U, Lunge VR, Streck AF. Molecular phylogenetic assessment of the canine parvovirus 2 worldwide and analysis of the genetic diversity and temporal spreading in Brazil. Infect Genet Evol. 2022 Mar;98:105225. https://doi.org/10.1016/j.meegid.2022.105225de Oliveira SantanaWSilveiraVPWolfJMKipperDEcheverrigaraySCanalCWTruyenULungeVRStreckAF.Molecular phylogenetic assessment of the canine parvovirus 2 worldwide and analysis of the genetic diversity and temporal spreading in Brazil.Infect Genet Evol.2022Mar;98:105225.https://doi.org/10.1016/j.meegid.2022.105225Search in Google Scholar
Decaro N, Buonavoglia C, Barrs VR. Canine parvovirus vaccination and immunisation failures: Are we far from disease eradication? Vet Microbiol. 2020 Aug;247:108760. https://doi.org/10.1016/j.vetmic.2020.108760DecaroNBuonavogliaCBarrsVR.Canine parvovirus vaccination and immunisation failures: Are we far from disease eradication?Vet Microbiol.2020Aug;247:108760.https://doi.org/10.1016/j.vetmic.2020.108760Search in Google Scholar
Decaro N, Buonavoglia C. Canine parvovirus – A review of epidemiological and diagnostic aspects, with emphasis on type 2c. Vet Microbiol. 2012 Feb;155 (1):1–12. https://doi.org/10.1016/j.vetmic.2011.09.007DecaroNBuonavogliaC.Canine parvovirus-A review of epidemiological and diagnostic aspects, with emphasis on type 2c.Vet Microbiol.2012Feb;155 (1):1–12.https://doi.org/10.1016/j.vetmic.2011.09.007Search in Google Scholar
Gautam A, Felderhoff H, Bağci C, Huson DH. Using AnnoTree to get more assignments, faster, in DIAMOND+MEGAN microbiome analysis. mSystems. 2022 Feb;7 (1):e0140821. https://doi.org/10.1128/msystems.01408-21GautamAFelderhoffHBağciCHusonDH.Using AnnoTree to get more assignments, faster, in DIAMOND+MEGAN microbiome analysis.mSystems.2022Feb;7 (1):e0140821.https://doi.org/10.1128/msystems.01408-21Search in Google Scholar
Greninger AL. A decade of RNA virus metagenomics is (not) enough. Virus Res. 2018 Jan;244:218–229. https://doi.org/10.1016/j.virusres.2017.10.014GreningerAL.A decade of RNA virus metagenomics is (not) enough.Virus Res.2018Jan;244:218–229.https://doi.org/10.1016/j.virusres.2017.10.014Search in Google Scholar
Janus LM, Bleich A. Coping with parvovirus infections in mice: Health surveillance and control. Lab Anim. 2012 Jan;46 (1):14–23. https://doi.org/10.1258/la.2011.011025JanusLMBleichA.Coping with parvovirus infections in mice: Health surveillance and control.Lab Anim.2012Jan;46 (1):14–23.https://doi.org/10.1258/la.2011.011025Search in Google Scholar
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012 Jun;28 (12):1647–1649. https://doi.org/10.1093/bioinformatics/bts199KearseMMoirRWilsonAStones-HavasSCheungMSturrockSBuxtonSCooperAMarkowitzSDuranCGeneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data.Bioinformatics.2012Jun;28 (12):1647–1649.https://doi.org/10.1093/bioinformatics/bts199Search in Google Scholar
Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016 Jul;33 (7):1870–1874. https://doi.org/10.1093/molbev/msw054KumarSStecherGTamuraK.MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets.Mol Biol Evol.2016Jul;33 (7):1870–1874.https://doi.org/10.1093/molbev/msw054Search in Google Scholar
Kuraku S, Zmasek CM, Nishimura O, Katoh K. aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic Acids Res. 2013 Jul;41 (W1):W22–W28. https://doi.org/10.1093/nar/gkt389KurakuSZmasekCMNishimuraOKatohK.aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.Nucleic Acids Res.2013Jul;41 (W1):W22–W28.https://doi.org/10.1093/nar/gkt389Search in Google Scholar
Kurucay HN, Tamer C, Muftuoglu B, Elhag AE, Gozel S, Cicek-Yildiz Y, Demirtas S, Ozan E, Albayrak H, Okur-Gumusova S, et al. First isolation and molecular characterization of canine parvovirus-type 2b (CPV-2b) from red foxes (Vulpes vulpes) living in the wild habitat of Turkey. Virol J. 2023 Feb;20 (1):27. https://doi.org/10.1186/s12985-023-01988-2KurucayHNTamerCMuftuogluBElhagAEGozelSCicek-YildizYDemirtasSOzanEAlbayrakHOkur-GumusovaSFirst isolation and molecular characterization of canine parvovirus-type 2b (CPV-2b) from red foxes (Vulpes vulpes) living in the wild habitat of Turkey.Virol J.2023Feb;20 (1):27.https://doi.org/10.1186/s12985-023-01988-2Search in Google Scholar
Lanave G, Ndiana LA, Pellegrini F, Diakoudi G, Di Martino B, Sgroi G, D’Alessio N, Vasinioti V, Camero M, Canuti M, et al. Detection at high prevalence of newlavirus (protoparvovirus) in the carcasses of red foxes. Virus Res. 2023 Jan;323:198971. https://doi.org/10.1016/j.virusres.2022.198971LanaveGNdianaLAPellegriniFDiakoudiGDi MartinoBSgroiGD’AlessioNVasiniotiVCameroMCanutiMDetection at high prevalence of newlavirus (protoparvovirus) in the carcasses of red foxes.Virus Res.2023Jan;323:198971.https://doi.org/10.1016/j.virusres.2022.198971Search in Google Scholar
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012 Mar;9 (4):357–359. https://doi.org/10.1038/nmeth.1923LangmeadBSalzbergSL.Fast gapped-read alignment with Bowtie 2.Nat Methods.2012Mar;9 (4):357–359.https://doi.org/10.1038/nmeth.1923Search in Google Scholar
Langmead B, Wilks C, Antonescu V, Charles R. Scaling read aligners to hundreds of threads on general-purpose processors. Bioinformatics. 2019 Feb;35 (3):421-432. https://doi.org/10.1093/bioinformatics/bty648LangmeadBWilksCAntonescuVCharlesR.Scaling read aligners to hundreds of threads on general-purpose processors.Bioinformatics.2019Feb;35 (3):421–432.https://doi.org/10.1093/bioinformatics/bty648Search in Google Scholar
Li D, Luo R, Liu CM, Leung CM, Ting HF, Sadakane K, Yamashita H, Lam TW. MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices. Methods. 2016 Jun;102:3–11. https://doi.org/10.1016/j.ymeth.2016.02.020LiDLuoRLiuCMLeungCMTingHFSadakaneKYamashitaHLamTW.MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.Methods.2016Jun;102:3–11.https://doi.org/10.1016/j.ymeth.2016.02.020Search in Google Scholar
Liu J, Yang X, Hao X, Feng Y, Zhang Y, Cheng Z. Effect of goose parvovirus and duck circovirus coinfection in ducks. J Vet Res. 2020 Jul;64 (3):355–361. https://doi.org/10.2478/jvetres-2020-0048LiuJYangXHaoXFengYZhangYChengZ.Effect of goose parvovirus and duck circovirus coinfection in ducks.J Vet Res.2020Jul;64 (3):355–361.https://doi.org/10.2478/jvetres-2020-0048Search in Google Scholar
Martin DP, Murrell B, Golden M, Khoosal A, Muhire B. RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol. 2015 May;1 (1):vev003. https://doi.org/10.1093/ve/vev003MartinDPMurrellBGoldenMKhoosalAMuhireB.RDP4: Detection and analysis of recombination patterns in virus genomes.Virus Evol.2015May;1 (1):vev003.https://doi.org/10.1093/ve/vev003Search in Google Scholar
Meng G, Zhang X, Plevka P, Yu Q, Tijssen P, Rossmann MG. The structure and host entry of an invertebrate parvovirus. J Virol. 2013 Dec;87 (23):12523–12530. https://doi.org/10.1128/jvi.01822-13MengGZhangXPlevkaPYuQTijssenPRossmannMG.The structure and host entry of an invertebrate parvovirus.J Virol.2013Dec;87 (23):12523–12530.https://doi.org/10.1128/jvi.01822-13Search in Google Scholar
Mietzsch M, McKenna R, Väisänen E, Yu JC, Ilyas M, Hull JA, Kurian J, Smith JK, Chipman P, Lasanajak Y, et al. Structural characterization of cuta-and tusavirus: Insight into protoparvoviruses capsid morphology. Viruses. 2020 Jun;12 (6):653. https://doi.org/10.3390/v12060653MietzschMMcKennaRVäisänenEYuJCIlyasMHullJAKurianJSmithJKChipmanPLasanajakYStructural characterization of cuta-and tusavirus: Insight into protoparvoviruses capsid morphology.Viruses.2020Jun;12 (6):653.https://doi.org/10.3390/v12060653Search in Google Scholar
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nat Methods. 2022 Jun;19 (6):679–682. https://doi.org/10.1038/s41592-022-01488-1MirditaMSchützeKMoriwakiYHeoLOvchinnikovSSteineggerM.ColabFold: Making protein folding accessible to all.Nat Methods.2022Jun;19 (6):679–682.https://doi.org/10.1038/s41592-022-01488-1Search in Google Scholar
Muhire BM, Varsani A, Martin DP. SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One. 2014 Sep;9 (9):e108277. https://doi.org/10.1371/journal.pone.0108277MuhireBMVarsaniAMartinDP.SDT: A virus classification tool based on pairwise sequence alignment and identity calculation.PLoS One.2014Sep;9 (9):e108277.https://doi.org/10.1371/journal.pone.0108277Search in Google Scholar
Ndiana LA, Lanave G, Desario C, Berjaoui S, Alfano F, Puglia I, Fusco G, Colaianni ML, Vincifori G, Camarda A, et al. Circulation of diverse protoparvoviruses in wild carnivores, Italy. Transbound Emerg Dis. 2021 Jul;68 (4):2489–2502. https://doi.org/10.1111/tbed.13917NdianaLALanaveGDesarioCBerjaouiSAlfanoFPugliaIFuscoGColaianniMLVinciforiGCamardaACirculation of diverse protoparvoviruses in wild carnivores, Italy.Transbound Emerg Dis.2021Jul;68 (4):2489–2502.https://doi.org/10.1111/tbed.13917Search in Google Scholar
Pénzes JJ, Söderlund-Venermo M, Canuti M, Eis-Hübinger AM, Hughes J, Cotmore SF, Harrach B. Reorganizing the family Parvo-viridae: A revised taxonomy independent of the canonical approach based on host association. Arch Virol. 2020 Sep;165 (9):2133–2146. https://doi.org/10.1007/s00705-020-04632-4PénzesJJSöderlund-VenermoMCanutiMEis-HübingerAMHughesJCotmoreSFHarrachB.Reorganizing the family Parvo-viridae: A revised taxonomy independent of the canonical approach based on host association.Arch Virol.2020Sep;165 (9):2133–2146.https://doi.org/10.1007/s00705-020-04632-4Search in Google Scholar
Phan TG, Vo NP, Bonkoungou IJ, Kapoor A, Barro N, O’Ryan M, Kapusinszky B, Wang C, Delwart E. Acute diarrhea in West African children: Diverse enteric viruses and a novel parvovirus genus. J Virol. 2012 Oct;86 (20):11024–11030. https://doi.org/10.1128/jvi.01427-12PhanTGVoNPBonkoungouIJKapoorABarroNO’RyanMKapusinszkyBWangCDelwartE.Acute diarrhea in West African children: Diverse enteric viruses and a novel parvovirus genus.J Virol.2012Oct;86 (20):11024–11030.https://doi.org/10.1128/jvi.01427-12Search in Google Scholar
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012 May;61 (3):539–542. https://doi.org/10.1093/sysbio/sys029RonquistFTeslenkoMvan der MarkPAyresDLDarlingAHöhnaSLargetBLiuLSuchardMAHuelsenbeckJP.MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space.Syst Biol.2012May;61(3):539–542.https://doi.org/10.1093/sysbio/sys029Search in Google Scholar
Ros C, Bayat N, Wolfisberg R, Almendral JM. Protoparvovirus cell entry. Viruses. 2017 Oct;9(11):313. https://doi.org/10.3390/v9110313RosCBayatNWolfisbergRAlmendralJM.Protoparvovirus cell entry.Viruses.2017Oct;9(11):313.https://doi.org/10.3390/v9110313Search in Google Scholar
Schmieder R, Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 2011 Mar;27 (6):863–864. https://doi.org/10.1093/bioinformatics/btr026SchmiederREdwardsR.Quality control and preprocessing of metagenomic datasets.Bioinformatics.2011Mar;27 (6):863–864.https://doi.org/10.1093/bioinformatics/btr026Search in Google Scholar
Stilwell JM, Anis E, Wilkes RP, Rissi DR. Dual infection with an emergent strain of canine distemper virus and canine parvovirus in an Arctic wolf under managed care. J Vet Diagn Invest. 2019 Jul; 31 (4):594–597. https://doi.org/10.1177/1040638719851832StilwellJMAnisEWilkesRPRissiDR.Dual infection with an emergent strain of canine distemper virus and canine parvovirus in an Arctic wolf under managed care.J Vet Diagn Invest.2019Jul;31 (4):594–597.https://doi.org/10.1177/1040638719851832Search in Google Scholar
Tuteja D, Banu K, Mondal B. Canine parvovirology – A brief updated review on structural biology, occurrence, pathogenesis, clinical diagnosis, treatment and prevention. Comp Immunol Microbiol Infect Dis. 2022 Feb;82:101765. https://doi.org/10.1016/j.cimid.2022.101765TutejaDBanuKMondalB.Canine parvovirology-A brief updated review on structural biology, occurrence, pathogenesis, clinical diagnosis, treatment and prevention.Comp Immunol Microbiol Infect Dis.2022Feb;82:101765.https://doi.org/10.1016/j.cimid.2022.101765Search in Google Scholar
Vargas-Bermudez DS, Mogollon JD, Franco-Rodriguez C, Jaime J. The novel porcine parvoviruses: Current state of knowledge and their possible implications in clinical syndromes in pigs. Viruses. 2023 Dec;15 (12):2398. https://doi.org/10.3390/v15122398Vargas-BermudezDSMogollonJDFranco-RodriguezCJaimeJ.The novel porcine parvoviruses: Current state of knowledge and their possible implications in clinical syndromes in pigs.Viruses.2023Dec;15 (12):2398.https://doi.org/10.3390/v15122398Search in Google Scholar
Wang Y, Yang S, Liu D, Zhou C, Li W, Lin Y, Wang X, Shen Q, Wang H, Li C, et al. The fecal virome of red-crowned cranes. Arch Virol. 2019 Jan;164 (1):3–16. https://doi.org/10.1007/s00705-018-4037-xWangYYangSLiuDZhouCLiWLinYWangXShenQWangHLiCThe fecal virome of red-crowned cranes.Arch Virol.2019Jan;164 (1):3–16.https://doi.org/10.1007/s00705-018-4037-xSearch in Google Scholar
Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, et al. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303. https://doi.org/10.1093/nar/gky427WaterhouseABertoniMBienertSStuderGTaurielloGGumiennyRHeerFTde BeerTAPRempferCBordoliLSWISS-MODEL: homology modelling of protein structures and complexes.Nucleic Acids Res.2018Jul;46(W1):W296–W303.https://doi.org/10.1093/nar/gky427Search in Google Scholar
Yeo YG, Kim HR, Park J, Kim JM, Shin YK, Lee KK, Kwon OK, Jeoung HY, Kang HE, Ku BK, et al. Epidemiological and molecular approaches for a fatal feline panleukopenia virus infection of captive Siberian tigers (Panthera tigris altaica) in the Republic of Korea. Animals. 2023 Sep;13 (18):2991. https://doi.org/10.3390/ani13182991YeoYGKimHRParkJKimJMShinYKLeeKKKwonOKJeoungHYKangHEKuBKEpidemiological and molecular approaches for a fatal feline panleukopenia virus infection of captive Siberian tigers (Panthera tigris altaica) in the Republic of Korea.Animals.2023Sep;13 (18):2991.https://doi.org/10.3390/ani13182991Search in Google Scholar
Yeşil Y, Çelik M, Yılmaz B. Wild edible plants in Yeşilli (Mardin-Turkey), a multicultural area. J Ethnobiol Ethnomed. 2019 Nov;15 (1):52. https://doi.org/10.1186/s13002-019-0327-yYeşilYÇelikMYılmazB.Wild edible plants in Yeşilli (Mardin-Turkey), a multicultural area.J Ethnobiol Ethnomed.2019Nov;15 (1):52.https://doi.org/10.1186/s13002-019-0327-ySearch in Google Scholar
Zhang P, Su H, Peng R, Chan JF, Bai S, Wang G, Huang Y, Hu X, Luo J, Liu S, et al. Identification of a novel astrovirus in pinnipeds. Front Microbiol. 2022 May;13:845601. https://doi.org/10.3389/fmicb.2022.845601ZhangPSuHPengRChanJFBaiSWangGHuangYHuXLuoJLiuSIdentification of a novel astrovirus in pinnipeds.Front Microbiol.2022May;13:845601.https://doi.org/10.3389/fmicb.2022.845601Search in Google Scholar