This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Abbasian F, Lockington R, Mallavarapu M, Naidu R. A comprehensive review of aliphatic hydrocarbon biodegradation by bacteria. Appl Biochem Biotechnol. 2015 Jun;176(3):670–699. https://doi.org/10.1007/s12010-015-1603-5AbbasianFLockingtonRMallavarapuMNaiduR.A comprehensive review of aliphatic hydrocarbon biodegradation by bacteria. . 2015Jun;176(3):670–699. https://doi.org/10.1007/s12010-015-1603-5Search in Google Scholar
Abdulla KJ, Ali SA, Gatea IH, Hameed NA, Maied SK. Bio-degradation of crude oil using local bacterial isolates. IOP Conf Ser Earth Environ Sci. 2019;467:012173. https://doi.org/10.1088/1755-1315/467/1/012173AbdullaKJAliSAGateaIHHameedNAMaiedSK.Bio-degradation of crude oil using local bacterial isolates. . 2019;467:012173. https://doi.org/10.1088/1755-1315/467/1/012173Search in Google Scholar
Abereton P, Ordinioha B, Mensah-Attipoe J, Toyinbo O. Crude oil spills and respiratory health of clean-up workers: A systematic review of literature. Atmosphere. 2023;14(3):494. https://doi.org/10.3390/atmos14030494AberetonPOrdiniohaBMensah-AttipoeJToyinboO.Crude oil spills and respiratory health of clean-up workers: A systematic review of literature. . 2023;14(3):494. https://doi.org/10.3390/atmos14030494Search in Google Scholar
Abu Laban N, Selesi D, Rattei T, Tischler P, Meckenstock RU. Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture. Environ Microbiol. 2010 Oct;12(10):2783–2796. https://doi.org/10.1111/j.1462-2920.2010.02248.xAbu LabanNSelesiDRatteiTTischlerPMeckenstockRU.Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture. . 2010Oct;12(10):2783–2796. https://doi.org/10.1111/j.1462-2920.2010.02248.xSearch in Google Scholar
Adebusoye SA, Ilori MO, Amund OO, Teniola OD, Olatope SO. Microbial degradation of petroleum hydrocarbons in a polluted tropical stream. World J Microbiol Biotechnol. 2007;23(8):1149–1159. https://doi.org/10.1007/s11274-007-9345-3AdebusoyeSAIloriMOAmundOOTeniolaODOlatopeSO.Microbial degradation of petroleum hydrocarbons in a polluted tropical stream. . 2007;23(8):1149–1159. https://doi.org/10.1007/s11274-007-9345-3Search in Google Scholar
Adipah S. Introduction of petroleum hydrocarbons contaminants and its human effects. J Environ Sci Public Health. 2019;3(1):1–9.AdipahS.Introduction of petroleum hydrocarbons contaminants and its human effects. . 2019;3(1):1–9.Search in Google Scholar
Ahmed S, Kumari K, Singh D. Different strategies and bio-removal mechanisms of petroleum hydrocarbons from contaminated sites. Arab Gulf J Sci Res. 2023 Apr. https://doi.org/10.1108/AGJSR-09-2022-0172AhmedSKumariKSinghD.Different strategies and bio-removal mechanisms of petroleum hydrocarbons from contaminated sites. . 2023Apr. https://doi.org/10.1108/AGJSR-09-2022-0172Search in Google Scholar
Al-Surrayai T, Yateem A, Al-Kandari R, Al-Sharrah T, Bin-Haji A. The use of Conocarpus lancifolius trees for the remediation of oil-contaminated soils. Soil Sediment Contam: Int J. 2009 Apr;18(3): 354–368. https://doi.org/10.1080/15320380902772661Al-SurrayaiTYateemAAl-KandariRAl-SharrahTBin-HajiA.The use of Conocarpus lancifolius trees for the remediation of oil-contaminated soils. . 2009Apr;18(3): 354–368. https://doi.org/10.1080/15320380902772661Search in Google Scholar
An X, Li N, Zhang S, Han Y, Zhang Q. Integration of proteome and metabolome profiling to reveal heat stress response and tolerance mechanisms of Serratia sp. AXJ-M for the bioremediation of papermaking black liquor. J Hazard Mater. 2023 May 15;450:131092. https://doi.org/10.1016/j.jhazmat.2023.131092AnXLiNZhangSHanYZhangQ.Integration of proteome and metabolome profiling to reveal heat stress response and tolerance mechanisms of Serratia sp. AXJ-M for the bioremediation of papermaking black liquor. . 2023May15;450:131092. https://doi.org/10.1016/j.jhazmat.2023.131092Search in Google Scholar
Arjoon K, Speight JG. Chemical and physical analysis of a petroleum hydrocarbon contamination on a soil sample to determine its natural degradation feasibility. Invent. 2020 Aug;5(3):43. https://doi.org/10.3390/inventions5030043ArjoonKSpeightJG.Chemical and physical analysis of a petroleum hydrocarbon contamination on a soil sample to determine its natural degradation feasibility. . 2020Aug;5(3):43. https://doi.org/10.3390/inventions5030043Search in Google Scholar
Arvind M, Bhatt S, Nichith KR. Biodegradation of aromatics such as benzene, toluene and phenol by Pseudomonas strain. Eur J Environ Earth Sci. 2020;1(3). https://doi.org/10.24018/ejgeo.2020.1.3.22ArvindMBhattSNichithKR.Biodegradation of aromatics such as benzene, toluene and phenol by Pseudomonas strain. . 2020;1(3). https://doi.org/10.24018/ejgeo.2020.1.3.22Search in Google Scholar
Avanzi IR, Gracioso LH, Baltazar MPG, Karolski B, Perpetuo EA, Nascimento CAO. Aerobic biodegradation of gasoline compounds by bacteria isolated from a hydrocarbon-contaminated soil. Environ Eng Sci. 2015 Dec;32(12):990–997. https://doi.org/10.1089/ees.2015.0122AvanziIRGraciosoLHBaltazarMPGKarolskiBPerpetuoEANascimentoCAO.Aerobic biodegradation of gasoline compounds by bacteria isolated from a hydrocarbon-contaminated soil. . 2015Dec;32(12):990–997. https://doi.org/10.1089/ees.2015.0122Search in Google Scholar
Basu A, Dixit SS, Phale PS. Metabolism of benzyl alcohol via catechol ortho-pathway in methylnaphthalene-degrading Pseudomonas putida CSV86. Appl Microbiol Biotechnol. 2003 Oct;62(5–6) 579–585. https://doi.org/10.1007/s00253-003-1305-8BasuADixitSSPhalePS.Metabolism of benzyl alcohol via catechol ortho-pathway in methylnaphthalene-degrading Pseudomonas putida CSV86. . 2003Oct;62(5–6).579–585. https://doi.org/10.1007/s00253-003-1305-8Search in Google Scholar
Bedics A, Banerjee S, Bóka K, Tóth E, Benedek T, Kriszt B, Táncsics A.Pinisolibacter aquiterrae sp. nov., a novel aromatic hydrocarbon-degrading bacterium isolated from benzene-, and xylene-degrading enrichment cultures, and emended description of the genus Pinisolibacter. Int J Syst Evol Microbiol. 2022 Feb;72(2). https://doi.org/10.1099/ijsem.0.005229BedicsABanerjeeSBókaKTóthEBenedekTKrisztBTáncsicsA.Pinisolibacter aquiterrae sp. . 2022Feb;72(2). https://doi.org/10.1099/ijsem.0.005229Search in Google Scholar
Bilen Ozyurek S, Seyis Bilkay I. Determination of petroleum biodegradation by bacteria isolated from drilling fluid, waste mud pit and crude oil. Turk J Biochem. 2017 Dec;42(6):609–616. https://doi.org/10.1515/tjb-2017-0087Bilen OzyurekSSeyis BilkayI.Determination of petroleum biodegradation by bacteria isolated from drilling fluid, waste mud pit and crude oil. . 2017Dec;42(6):609–616. https://doi.org/10.1515/tjb-2017-0087Search in Google Scholar
Brito EMS, Guyoneaud R, Goñi-Urriza M, Ranchou-Peyruse A, Verbaere A, Crapez MAC, Wasserman JCA, Duran R. Characterization of hydrocarbonoclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil. Res Microbiol. 2006 Oct; 157(8):752–762. https://doi.org/10.1016/j.resmic.2006.03.005BritoEMSGuyoneaudRGoñi-UrrizaMRanchou-PeyruseAVerbaereACrapezMACWassermanJCADuranR.Characterization of hydrocarbonoclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil. . 2006Oct; 157(8):752–762. https://doi.org/10.1016/j.resmic.2006.03.005Search in Google Scholar
Brzeszcz J, Kaszycki P. Aerobic bacteria degrading both n-alkanes and aromatic hydrocarbons: An undervalued strategy for metabolic diversity and flexibility. Biodegradation. 2018 Aug;29(4):359–407. https://doi.org/10.1007/s10532-018-9837-xBrzeszczJKaszyckiP.Aerobic bacteria degrading both n-alkanes and aromatic hydrocarbons: An undervalued strategy for metabolic diversity and flexibility. . 2018Aug;29(4):359–407. https://doi.org/10.1007/s10532-018-9837-xSearch in Google Scholar
Chen Y, Ye W, Zhang Y, Xu Y. High speed BLASTN: An accelerated MegaBLAST search tool. Nucleic Acids Res. 2015 Aug;43(16): 7762–7768. https://doi.org/10.1093/nar/gkv784ChenYYeWZhangYXuY.High speed BLASTN: An accelerated MegaBLAST search tool. . 2015Aug;43(16): 7762–7768. https://doi.org/10.1093/nar/gkv784Search in Google Scholar
Chuah LF, Chew KW, Bokhari A, Mubashir M, Show PL. Biodegradation of crude oil in seawater by using a consortium of symbiotic bacteria. Environ Res. 2022 Oct;213:113721. https://doi.org/10.1016/j.envres.2022.113721ChuahLFChewKWBokhariAMubashirMShowPL.Biodegradation of crude oil in seawater by using a consortium of symbiotic bacteria. . 2022Oct;213:113721. https://doi.org/10.1016/j.envres.2022.113721Search in Google Scholar
da Silva LJ, Alves FC, de França FP. A review of the technological solutions for the treatment of oily sludges from petroleum refineries. Waste Manage Res. 2012 Oct;30(10):1016–1030. https://doi.org/10.1177/0734242X12448517da SilvaLJAlvesFCde FrançaFP.A review of the technological solutions for the treatment of oily sludges from petroleum refineries. . 2012Oct;30(10):1016–1030. https://doi.org/10.1177/0734242X12448517Search in Google Scholar
Davey JF, Gibson DT. Bacterial metabolism of para- and metaxylene: Oxidation of a methyl substituent. J Bacteriol. 1974 Sep; 119(3):923–929. https://doi.org/10.1128/jb.119.3.923-929.1974DaveyJFGibsonDT.Bacterial metabolism of para- and metaxylene: Oxidation of a methyl substituent. . 1974Sep; 119(3):923–929. https://doi.org/10.1128/jb.119.3.923-929.1974Search in Google Scholar
Denome SA, Stanley DC, Olson ES, Young KD. Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway. J Bacteriol. 1993 Nov;175(21):6890–6901. https://doi.org/10.1128/jb.175.21.6890-6901.1993DenomeSAStanleyDCOlsonESYoungKD.Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway. . 1993Nov;175(21):6890–6901. https://doi.org/10.1128/jb.175.21.6890-6901.1993Search in Google Scholar
Di Canito A, Zampolli J, Orro A, D’Ursi P, Milanesi L, Sello G, Steinbüchel A, Di Gennaro P. Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7. BMC Genomics. 2018 Dec;19(1):587. https://doi.org/10.1186/s12864-018-4965-6Di CanitoAZampolliJOrroAD’UrsiPMilanesiLSelloGSteinbüchelADi GennaroP.Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7. . 2018Dec;19(1):587. https://doi.org/10.1186/s12864-018-4965-6Search in Google Scholar
Egland PG, Pelletier DA, Dispensa M, Gibson J, Harwood CS. A cluster of bacterial genes for anaerobic benzene ring biodegradation. Proc Natl Acad Sci USA. 1997 Jun;94(12):6484–6489. https://doi.org/10.1073/pnas.94.12.6484EglandPGPelletierDADispensaMGibsonJHarwoodCS.A cluster of bacterial genes for anaerobic benzene ring biodegradation. . 1997Jun;94(12):6484–6489. https://doi.org/10.1073/pnas.94.12.6484Search in Google Scholar
Ezeonu CS, Tagbo R, Anike EN, Oje OA, Onwurah INE. Biotechnological tools for environmental sustainability: Prospects and challenges for environments in Nigeria – A standard review. Biotechnol Res Int. 2012 May;2012:1–26. https://doi.org/10.1155/2012/450802EzeonuCSTagboRAnikeENOjeOAOnwurahINE.Biotechnological tools for environmental sustainability: Prospects and challenges for environments in Nigeria – A standard review. . 2012May;2012:1–26. https://doi.org/10.1155/2012/450802Search in Google Scholar
Eziuzor SC, Vogt C. Anaerobe isolation from denitrifying benzenedegrading enrichment culture and their capacity to mineralize benzene. bioRxiv 2023;2023.01.07.522375. https://doi.org/10.1101/2023.01.07.522375EziuzorSCVogtC.Anaerobe isolation from denitrifying benzenedegrading enrichment culture and their capacity to mineralize benzene. 2023;2023.01.07.522375. https://doi.org/10.1101/2023.01.07.522375Search in Google Scholar
Feng S, Gong L, Zhang Y, Tong Y, Zhang H, Zhu D, Huang X, Yang H. Bioaugmentation potential evaluation of a bacterial consortium composed of isolated Pseudomonas and Rhodococcus for degrading benzene, toluene and styrene in sludge and sewage. Bioresour Technol. 2021 Jan;320(Pt A):124329. https://doi.org/10.1016/j.biortech.2020.124329FengSGongLZhangYTongYZhangHZhuDHuangXYangH.Bioaugmentation potential evaluation of a bacterial consortium composed of isolated Pseudomonas and Rhodococcus for degrading benzene, toluene and styrene in sludge and sewage. . 2021Jan;320(Pt A):124329. https://doi.org/10.1016/j.biortech.2020.124329Search in Google Scholar
Ganesh Kumar A, Mathew NC, Sujitha K, Kirubagaran R, Dharani G. Genome analysis of deep sea piezotolerant Nesiotobacter exalbescens COD22 and toluene degradation studies under high pressure condition. Sci Rep. 2019 Dec;9(1):18724. https://doi.org/10.1038/s41598-019-55115-9Ganesh KumarAMathewNCSujithaKKirubagaranRDharaniG.Genome analysis of deep sea piezotolerant Nesiotobacter exalbescens COD22 and toluene degradation studies under high pressure condition. . 2019Dec;9(1):18724. https://doi.org/10.1038/s41598-019-55115-9Search in Google Scholar
Gomes E, da Silva R, de Cassia Pereira J, Ladino-Orjuela G. Chapter 3 – Fungal growth on solid substrates: A physiological overview. In: Pandey A, Larroche C, Soccol CR, editors. Current developments in biotechnology and bioengineering. Amsterdam (The Netherlands): Elsevier B.V.; 2018. p. 31–56. https://doi.org/10.1016/B978-0-444-63990-5.00003-7GomesEda SilvaRde Cassia PereiraJLadino-OrjuelaG.Chapter 3 – Fungal growth on solid substrates: A physiological overview. In: PandeyALarrocheCSoccolCR, editors. . Amsterdam (The Netherlands): Elsevier B.V.; 2018. p. 31–56. https://doi.org/10.1016/B978-0-444-63990-5.00003-7Search in Google Scholar
Goyal AK, Zylstra GJ. Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni. J Ind Microbiol Biotechnol. 1997 Nov;19(5–6):401–407. https://doi.org/10.1038/sj.jim.2900476GoyalAKZylstraGJ.Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni. . 1997Nov;19(5–6):401–407. https://doi.org/10.1038/sj.jim.2900476Search in Google Scholar
Haider FU, Ejaz M, Cheema SA, Khan MI, Zhao B, Liqun C, Salim MA, Naveed M, Khan N, Núñez-Delgado A, et al. Phytotoxicity of petroleum hydrocarbons: Sources, impacts and remediation strategies. Environ Res. 2021 Jun;197:111031. https://doi.org/10.1016/j.envres.2021.111031HaiderFUEjazMCheemaSAKhanMIZhaoBLiqunCSalimMANaveedMKhanNNúñez-DelgadoAPhytotoxicity of petroleum hydrocarbons: Sources, impacts and remediation strategies. . 2021Jun;197:111031. https://doi.org/10.1016/j.envres.2021.111031Search in Google Scholar
Hao X, Chen Q, van Loosdrecht MCM, Li J, Jiang H. Sustainable disposal of excess sludge: Incineration without anaerobic digestion. Water Res. 2020 Mar;170:115298. https://doi.org/10.1016/j.watres.2019.115298HaoXChenQvan LoosdrechtMCMLiJJiangH.Sustainable disposal of excess sludge: Incineration without anaerobic digestion. . 2020Mar;170:115298. https://doi.org/10.1016/j.watres.2019.115298Search in Google Scholar
Heider J, Spormann AM, Beller HR, Widdel F. Anaerobic bacterial metabolism of hydrocarbons. FEMS Microbiol Rev. 1998 Dec; 22(5):459–473. https://doi.org/10.1111/j.1574-6976.1998.tb00381.xHeiderJSpormannAMBellerHRWiddelF.Anaerobic bacterial metabolism of hydrocarbons. . 1998Dec; 22(5):459–473. https://doi.org/10.1111/j.1574-6976.1998.tb00381.xSearch in Google Scholar
Hossain MF, Akter MA, Sohan MSR, Sultana DN, Reza MA, Hoque KMF. Bioremediation potential of hydrocarbon degrading bacteria: Isolation, characterization, and assessment. Saudi J Biol Sci. 2022 Jan;29(1):211–216. https://doi.org/10.1016/j.sjbs.2021.08.069HossainMFAkterMASohanMSRSultanaDNRezaMAHoqueKMF.Bioremediation potential of hydrocarbon degrading bacteria: Isolation, characterization, and assessment. . 2022Jan;29(1):211–216. https://doi.org/10.1016/j.sjbs.2021.08.069Search in Google Scholar
Hu M, Zhang F, Li G, Ruan H, Li X, Zhong L, Chen G, Rui Y.Falsochrobactrum tianjinense sp. nov., a new petroleum-degrading bacteria isolated from oily soils. Int J Environ Res Public Health. 2022 Sep;19(18):11833. https://doi.org/10.3390/ijerph191811833HuMZhangFLiGRuanHLiXZhongLChenGRuiY.Falsochrobactrum tianjinense sp. nov., a new petroleum-degrading bacteria isolated from oily soils. . 2022Sep;19(18):11833. https://doi.org/10.3390/ijerph191811833Search in Google Scholar
Jeffries TC, Rayu S, Nielsen UN, Lai K, Ijaz A, Nazaries L, Singh BK. Metagenomic functional potential predicts degradation rates of a model organophosphorus xenobiotic in pesticide contaminated soils. Front Microbiol. 2018 Feb;9:147. https://doi.org/10.3389/fmicb.2018.00147JeffriesTCRayuSNielsenUNLaiKIjazANazariesLSinghBK.Metagenomic functional potential predicts degradation rates of a model organophosphorus xenobiotic in pesticide contaminated soils. . 2018Feb;9:147. https://doi.org/10.3389/fmicb.2018.00147Search in Google Scholar
Kalyuzhnaya MG, Yang S, Rozova ON, Smalley NE, Clubb J, Lamb A, Gowda GAN, Raftery D, Fu Y, Bringel F, et al. Highly efficient methane biocatalysis revealed in a methanotrophic bacterium. Nat Commun. 2013 Dec;4(1):2785. https://doi.org/10.1038/ncomms3785KalyuzhnayaMGYangSRozovaONSmalleyNEClubbJLambAGowdaGANRafteryDFuYBringelFHighly efficient methane biocatalysis revealed in a methanotrophic bacterium. . 2013Dec;4(1):2785. https://doi.org/10.1038/ncomms3785Search in Google Scholar
Koe WS, Lee JW, Chong WC, Pang YL, Sim LC. An overview of photocatalytic degradation: Photocatalysts, mechanisms, and development of photocatalytic membrane. Environ Sci Pollut Res Int. 2020 Jan;27(3):2522–2565. https://doi.org/10.1007/s11356-019-07193-5KoeWSLeeJWChongWCPangYLSimLC.An overview of photocatalytic degradation: Photocatalysts, mechanisms, and development of photocatalytic membrane. . 2020Jan;27(3):2522–2565. https://doi.org/10.1007/s11356-019-07193-5Search in Google Scholar
Kumar A, Mallick SP, Singh D, Gupta N. Chapter 1 – Advances in bioremediation: Introduction, applications, and limitations. In: Kumar S, Hashmi MZ, editors. Biological approaches to controlling pollutants. Duxford (UK): Woodhead Publishing; 2022. p. 1–14. https://doi.org/10.1016/B978-0-12-824316-9.00003-3KumarAMallickSPSinghDGuptaN.Chapter 1 – Advances in bioremediation: Introduction, applications, and limitations. In: KumarSHashmiMZ, editors. . Duxford (UK): Woodhead Publishing; 2022. p. 1–14. https://doi.org/10.1016/B978-0-12-824316-9.00003-3Search in Google Scholar
Li X, Zhang F, Guan B, Sun J, Liao G. Review on oily sludge treatment technology. IOP Conf Ser Earth Environ Sci. 2020;467:012173. https://doi.org/10.1088/1755-1315/467/1/012173LiXZhangFGuanBSunJLiaoG.Review on oily sludge treatment technology. . 2020;467:012173. https://doi.org/10.1088/1755-1315/467/1/012173Search in Google Scholar
Li Y, Cui Z, Luan X, Bian X, Li G, Hao T, Liu J, Feng K, Song Y. Degradation potential and pathways of methylcyclohexane by bacteria derived from Antarctic surface water. Chemosphere. 2023a Jul; 329:138647. https://doi.org/10.1016/j.chemosphere.2023.138647LiYCuiZLuanXBianXLiGHaoTLiuJFengKSongY.Degradation potential and pathways of methylcyclohexane by bacteria derived from Antarctic surface water. . 2023aJul; 329:138647. https://doi.org/10.1016/j.chemosphere.2023.138647Search in Google Scholar
Li YQ, Xin Y, Li C, Liu J, Huang T. Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil. Braz J Microbiol. 2023b;54:935–947. https://doi.org/10.1007/s42770-023-01000-7LiYQXinYLiCLiuJHuangT.Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil. . 2023b;54:935–947. https://doi.org/10.1007/s42770-023-01000-7Search in Google Scholar
Liang J, Cheng T, Huang Y, Liu J. Petroleum degradation by Pseudomonas sp. ZS1 is impeded in the presence of antagonist Alcaligenes sp. CT10. AMB Express. 2018 Dec;8(1):88. https://doi.org/10.1186/s13568-018-0620-5LiangJChengTHuangYLiuJ.Petroleum degradation by Pseudomonas sp. . 2018Dec;8(1):88. https://doi.org/10.1186/s13568-018-0620-5Search in Google Scholar
Lim MW, Lau EV, Poh PE. Micro-macrobubbles interactions and its application in flotation technology for the recovery of high density oil from contaminated sands. J Petrol Sci Eng. 2018 Feb;161:29–37. https://doi.org/10.1016/j.petrol.2017.11.064LimMWLauEVPohPE.Micro-macrobubbles interactions and its application in flotation technology for the recovery of high density oil from contaminated sands. . 2018Feb;161:29–37. https://doi.org/10.1016/j.petrol.2017.11.064Search in Google Scholar
Lima SD, Oliveira AF, Golin R, Lopes VCP, Caixeta DS, Lima ZM, Morais EB. Isolation and characterization of hydrocarbon-degrading bacteria from gas station leaking-contaminated groundwater in the Southern Amazon, Brazil. Braz J Biol. 2020 Jun;80(2):354–361. https://doi.org/10.1590/1519-6984.208611LimaSDOliveiraAFGolinRLopesVCPCaixetaDSLimaZMMoraisEB.Isolation and characterization of hydrocarbon-degrading bacteria from gas station leaking-contaminated groundwater in the Southern Amazon, Brazil. . 2020Jun;80(2):354–361. https://doi.org/10.1590/1519-6984.208611Search in Google Scholar
Liu JW, Wei KH, Xu SW, Cui J, Ma J, Xiao XL, Xi BD, He XS. Surfactant-enhanced remediation of oil-contaminated soil and groundwater: A review. Sci Total Environ. 2021a Feb;756:144142. https://doi.org/10.1016/j.scitotenv.2020.144142LiuJWWeiKHXuSWCuiJMaJXiaoXLXiBDHeXS.Surfactant-enhanced remediation of oil-contaminated soil and groundwater: A review. . 2021aFeb;756:144142. https://doi.org/10.1016/j.scitotenv.2020.144142Search in Google Scholar
Liu Y, Tang H, Lin Z, Xu P. Mechanisms of acid tolerance in bacteria and prospects in biotechnology and bioremediation. Biotechnol Adv. 2015 Nov;33(7):1484–1492. https://doi.org/10.1016/j.biotechadv.2015.06.001LiuYTangHLinZXuP.Mechanisms of acid tolerance in bacteria and prospects in biotechnology and bioremediation. . 2015Nov;33(7):1484–1492. https://doi.org/10.1016/j.biotechadv.2015.06.001Search in Google Scholar
Liu Y, Wu J, Liu Y, Wu X. Biological process of alkane degradation by Gordonia sihwaniensis. ACS Omega. 2021b Jan;7(1):55–63. https://doi.org/10.1021/acsomega.1c01708LiuYWuJLiuYWuX.Biological process of alkane degradation by Gordonia sihwaniensis. . 2021bJan;7(1):55–63. https://doi.org/10.1021/acsomega.1c01708Search in Google Scholar
MacKintosh RW, Fewson CA. Benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II from Acinetobacter calcoaceticus. Purification and preliminary characterization. Biochem J. 1988 Mar; 250(3):743–751. https://doi.org/10.1042/bj2500743MacKintoshRWFewsonCA.Benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II from Acinetobacter calcoaceticus. . 1988Mar; 250(3):743–751. https://doi.org/10.1042/bj2500743Search in Google Scholar
Marchand C, St-Arnaud M, Hogland W, Bell TH, Hijri M. Petroleum biodegradation capacity of bacteria and fungi isolated from petroleum-contaminated soil. Int Biodeterior Biodegrad. 2017 Jan; 116:48–57. https://doi.org/10.1016/j.ibiod.2016.09.030MarchandCSt-ArnaudMHoglandWBellTHHijriM.Petroleum biodegradation capacity of bacteria and fungi isolated from petroleum-contaminated soil. . 2017Jan; 116:48–57. https://doi.org/10.1016/j.ibiod.2016.09.030Search in Google Scholar
Margolin Eren KJ, Elkabets O, Amirav A. A comparison of electron ionization mass spectra obtained at 70 eV, low electron energies, and with cold EI and their NIST library identification probabilities. J Mass Spectrom. 2020 Dec;55(12):e4646. https://doi.org/10.1002/jms.4646Margolin ErenKJElkabetsOAmiravA.A comparison of electron ionization mass spectra obtained at 70 eV, low electron energies, and with cold EI and their NIST library identification probabilities. . 2020Dec;55(12):e4646. https://doi.org/10.1002/jms.4646Search in Google Scholar
Marr EK, Stone RW. Bacterial oxidation of benzene. J Bacteriol. 1961 Mar;81(3):425–430. https://doi.org/10.1128/jb.81.3.425-430.1961MarrEKStoneRW.Bacterial oxidation of benzene. . 1961Mar;81(3):425–430. https://doi.org/10.1128/jb.81.3.425-430.1961Search in Google Scholar
Mohanty G, Mukherji S. Biodegradation rate of diesel range n-alkanes by bacterial cultures Exiguobacterium aurantiacum and Burkholderia cepacia. Int Biodeterior Biodegrad. 2008 Apr;61(3): 240–250. https://doi.org/10.1016/j.ibiod.2007.06.011MohantyGMukherjiS.Biodegradation rate of diesel range n-alkanes by bacterial cultures Exiguobacterium aurantiacum and Burkholderia cepacia. . 2008Apr;61(3): 240–250. https://doi.org/10.1016/j.ibiod.2007.06.011Search in Google Scholar
Mori R. Replacing all petroleum-based chemical products with natural biomass-based chemical products: A tutorial review. RSC Sustain. 2023;1(2):179–212. https://doi.org/10.1039/D2SU00014HMoriR.Replacing all petroleum-based chemical products with natural biomass-based chemical products: A tutorial review. . 2023;1(2):179–212. https://doi.org/10.1039/D2SU00014HSearch in Google Scholar
Mousa AERA. Isolation and characterization of phenol degrading bacteria from wastewater. Int J Biol Phys Chem Stud. 2023;5(2):17–24. https://doi.org/10.32996/ijbpcs.2023.5.2.3MousaAERA.Isolation and characterization of phenol degrading bacteria from wastewater. . 2023;5(2):17–24. https://doi.org/10.32996/ijbpcs.2023.5.2.3Search in Google Scholar
Muccee F, Ejaz S, Riaz N, Iqbal J. Molecular and functional analysis of naphthalene-degrading bacteria isolated from the effluents of indigenous tanneries. J Basic Microbiol. 2021 Jul;61(7):627–641. https://doi.org/10.1002/jobm.202100123MucceeFEjazSRiazNIqbalJ.Molecular and functional analysis of naphthalene-degrading bacteria isolated from the effluents of indigenous tanneries. . 2021Jul;61(7):627–641. https://doi.org/10.1002/jobm.202100123Search in Google Scholar
Muccee F, Ejaz S, Riaz N. Toluene degradation via a unique metabolic route in indigenous bacterial species. Arch Microbiol. 2019 Dec; 201(10):1369–1383. https://doi.org/10.1007/s00203-019-01705-0MucceeFEjazSRiazN.Toluene degradation via a unique metabolic route in indigenous bacterial species. . 2019Dec; 201(10):1369–1383. https://doi.org/10.1007/s00203-019-01705-0Search in Google Scholar
Muccee F, Ejaz S. An investigation of petrol metabolizing bacteria isolated from contaminated soil samples collected from various fuel stations. Pol J Microbiol. 2019 Jan;68(2):193–201. https://doi.org/10.33073/pjm-2019-019MucceeFEjazS.An investigation of petrol metabolizing bacteria isolated from contaminated soil samples collected from various fuel stations. . 2019Jan;68(2):193–201. https://doi.org/10.33073/pjm-2019-019Search in Google Scholar
Newman LM, Wackett LP. Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4. Biochemistry. 1995 Oct;34(43):14066–14076. https://doi.org/10.1021/bi00043a012NewmanLMWackettLP.Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4. . 1995Oct;34(43):14066–14076. https://doi.org/10.1021/bi00043a012Search in Google Scholar
Olsen RH, Kukor JJ, Kaphammer B. A novel toluene-3-monooxy-genase pathway cloned from Pseudomonas pickettii PKO1. J Bacteriol. 1994 Jun;176(12):3749–3756. https://doi.org/10.1128/jb.176.12.3749-3756.1994OlsenRHKukorJJKaphammerB.A novel toluene-3-monooxy-genase pathway cloned from Pseudomonas pickettii PKO1. . 1994Jun;176(12):3749–3756. https://doi.org/10.1128/jb.176.12.3749-3756.1994Search in Google Scholar
Ossai IC, Ahmed A, Hassan A, Hamid FS. Remediation of soil and water contaminated with petroleum hydrocarbon: A review. Environ Technol Innovation. 2020 Feb;17:100526. https://doi.org/10.1016/j.eti.2019.100526OssaiICAhmedAHassanAHamidFS.Remediation of soil and water contaminated with petroleum hydrocarbon: A review. . 2020Feb;17:100526. https://doi.org/10.1016/j.eti.2019.100526Search in Google Scholar
Petkova M, Shilev S. Revealing fungal diversity in mesophilic and thermophilic habitats of sewage sludge composting by next-generation sequencing. Appl Sci. 2023;13(9):5546. https://doi.org/10.3390/app13095546PetkovaMShilevS.Revealing fungal diversity in mesophilic and thermophilic habitats of sewage sludge composting by next-generation sequencing. . 2023;13(9):5546. https://doi.org/10.3390/app13095546Search in Google Scholar
Podgorski DC, Corilo YE, Nyadong L, Lobodin VV, Bythell BJ, Robbins WK, McKenna AM, Marshall AG, Rodgers RP. Heavy petroleum composition. 5. Compositional and structural continuum of petroleum revealed. Energy Fuels. 2013 Mar;27(3):1268–1276. https://doi.org/10.1021/ef301737fPodgorskiDCCoriloYENyadongLLobodinVVBythellBJRobbinsWKMcKennaAMMarshallAGRodgersRP.Heavy petroleum composition. 5. . 2013Mar;27(3):1268–1276. https://doi.org/10.1021/ef301737fSearch in Google Scholar
Ramírez-Camacho JG, Carbone F, Pastor E, Bubbico R, Casal J. Assessing the consequences of pipeline accidents to support landuse planning. Saf Sci. 2017 Aug;97:34–42. https://doi.org/10.1016/j.ssci.2016.01.021Ramírez-CamachoJGCarboneFPastorEBubbicoRCasalJ.Assessing the consequences of pipeline accidents to support landuse planning. . 2017Aug;97:34–42. https://doi.org/10.1016/j.ssci.2016.01.021Search in Google Scholar
Reiner AM. Metabolism of benzoic acid by bacteria: 3,5-cyclohexa-diene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol. J Bacteriol. 1971 Oct;108(1):89–94. https://doi.org/10.1128/jb.108.1.89-94.1971ReinerAM.Metabolism of benzoic acid by bacteria: 3,5-cyclohexa-diene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol. . 1971Oct;108(1):89–94. https://doi.org/10.1128/jb.108.1.89-94.1971Search in Google Scholar
Sadiqi S, Hamza M, Ali F, Alam S, Shakeela Q, Ahmed S, Ayaz A, Ali S, Saqib S, Ullah F, et al. Molecular characterization of bacterial isolates from soil samples and evaluation of their antibacterial potential against MDRS. Molecules. 2022 Sep;27(19):6281. https://doi.org/10.3390/molecules27196281SadiqiSHamzaMAliFAlamSShakeelaQAhmedSAyazAAliSSaqibSUllahFMolecular characterization of bacterial isolates from soil samples and evaluation of their antibacterial potential against MDRS. . 2022Sep;27(19):6281. https://doi.org/10.3390/molecules27196281Search in Google Scholar
Salari M, Rahmanian V, Hashemi SA, Chiang WH, Lai CW, Mousavi SM, Gholami A. Bioremediation treatment of polyaromatic hydrocarbons for environmental sustainability. Water. 2022 Dec;14(23):3980. https://doi.org/10.3390/w14233980SalariMRahmanianVHashemiSAChiangWHLaiCWMousaviSMGholamiA.Bioremediation treatment of polyaromatic hydrocarbons for environmental sustainability. . 2022Dec;14(23):3980. https://doi.org/10.3390/w14233980Search in Google Scholar
Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O’Neill K, Robbertse B, et al. NCBI Taxonomy: A comprehensive update on curation, resources and tools. Database. 2020 Jan;2020:baaa062. https://doi.org/10.1093/database/baaa062SchochCLCiufoSDomrachevMHottonCLKannanSKhovanskayaRLeipeDMcveighRO’NeillKRobbertseBNCBI Taxonomy: A comprehensive update on curation, resources and tools. . 2020Jan;2020:baaa062. https://doi.org/10.1093/database/baaa062Search in Google Scholar
Sharma I. Bioremediation techniques for polluted environment: Concept, advantages, limitations, and prospects. In: Alfonso Murillo-Tovar M, Saldarriaga-Noreña H and Saeid A, editors. Trace metals in the environment – new approaches and recent advances. London (UK): IntechOpen; 2020. https://doi.org/10.5772/intechopen.90453SharmaI.Bioremediation techniques for polluted environment: Concept, advantages, limitations, and prospects. In: Alfonso Murillo-TovarMSaldarriaga-NoreñaHSaeidA, editors. . London (UK): IntechOpen; 2020. https://doi.org/10.5772/intechopen.90453Search in Google Scholar
Sievers F, Higgins DG. The Clustal Omega multiple alignment package. In: Katoh K, editor. Multiple sequence alignment. Methods in molecular biology, vol. 2231. New York (USA): Humana; 2021. p. 3–16. https://doi.org/10.1007/978-1-0716-1036-7_1SieversFHigginsDG.The Clustal Omega multiple alignment package. In: KatohK, editor. , vol. 2231. New York (USA): Humana; 2021. p. 3–16. https://doi.org/10.1007/978-1-0716-1036-7_1Search in Google Scholar
Sivagami K, Padmanabhan K, Joy AC, Nambi IM. Microwave (MW) remediation of hydrocarbon contaminated soil using spent graphite – An approach for waste as a resource. J Environ Manage. 2019 Jan;230:151–158. https://doi.org/10.1016/j.jenvman.2018.08.071SivagamiKPadmanabhanKJoyACNambiIM.Microwave (MW) remediation of hydrocarbon contaminated soil using spent graphite – An approach for waste as a resource. . 2019Jan;230:151–158. https://doi.org/10.1016/j.jenvman.2018.08.071Search in Google Scholar
Speight JG, Arjoon KK. Bioremediation of petroleum and petroleum products. Hoboken (USA): John Wiley & Sons, Ltd.; 2012. https://doi.org/10.1002/9781118528471SpeightJGArjoonKK.. Hoboken (USA): John Wiley & Sons, Ltd.; 2012. https://doi.org/10.1002/9781118528471Search in Google Scholar
Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol. 2021 Jun;38(7): 3022–3027. https://doi.org/10.1093/molbev/msab120TamuraKStecherGKumarS.MEGA11: Molecular Evolutionary Genetics Analysis version 11. . 2021Jun;38(7): 3022–3027. https://doi.org/10.1093/molbev/msab120Search in Google Scholar
Tian X, Wang X, Peng S, Wang Z, Zhou R, Tian H. Isolation, screening, and crude oil degradation characteristics of hydrocarbons-degrading bacteria for treatment of oily wastewater. Water Sci Technol. 2018 Dec;78(12):2626–2638. https://doi.org/10.2166/wst.2019.025TianXWangXPengSWangZZhouRTianH.Isolation, screening, and crude oil degradation characteristics of hydrocarbons-degrading bacteria for treatment of oily wastewater. . 2018Dec;78(12):2626–2638. https://doi.org/10.2166/wst.2019.025Search in Google Scholar
Tran HT, Lin C, Hoang HG, Bui XT, Le VG, Vu CT. Soil washing for the remediation of dioxin-contaminated soil: A review. J Hazard Mater. 2022 Jan;421:126767. https://doi.org/10.1016/j.jhazmat.2021.126767TranHTLinCHoangHGBuiXTLeVGVuCT.Soil washing for the remediation of dioxin-contaminated soil: A review. . 2022Jan;421:126767. https://doi.org/10.1016/j.jhazmat.2021.126767Search in Google Scholar
Viesser JA, Sugai-Guerios MH, Malucelli LC, Pincerati MR, Karp SG, Maranho LT. Petroleum-tolerant rhizospheric bacteria: Isolation, characterization and bioremediation potential. Sci Rep. 2020 Feb;10(1):2060. https://doi.org/10.1038/s41598-020-59029-9ViesserJASugai-GueriosMHMalucelliLCPinceratiMRKarpSGMaranhoLT.Petroleum-tolerant rhizospheric bacteria: Isolation, characterization and bioremediation potential. . 2020Feb;10(1):2060. https://doi.org/10.1038/s41598-020-59029-9Search in Google Scholar
Wang M, Ding M, Yuan Y. Bioengineering for the microbial degradation of petroleum hydrocarbon contaminants. Bioengineering. 2023 Mar;10(3):347. https://doi.org/10.3390/bioengineering10030347WangMDingMYuanY.Bioengineering for the microbial degradation of petroleum hydrocarbon contaminants. . 2023Mar;10(3):347. https://doi.org/10.3390/bioengineering10030347Search in Google Scholar
Whited GM, Gibson DT. Separation and partial characterization of the enzymes of the toluene-4-monooxygenase catabolic pathway in Pseudomonas mendocina KR1. J Bacteriol. 1991 May;173(9): 3017–3020. https://doi.org/10.1128/jb.173.9.3017-3020.1991WhitedGMGibsonDT.Separation and partial characterization of the enzymes of the toluene-4-monooxygenase catabolic pathway in Pseudomonas mendocina KR1. . 1991May;173(9): 3017–3020. https://doi.org/10.1128/jb.173.9.3017-3020.1991Search in Google Scholar
Wright MH, Adelskov J, Greene AC. Bacterial DNA extraction using individual enzymes and phenol/chloroform separation. J Microbiol Biol Educ. 2017 Sep;18(2):18.2.48. https://doi.org/10.1128/jmbe.v18i2.1348WrightMHAdelskovJGreeneAC.Bacterial DNA extraction using individual enzymes and phenol/chloroform separation. . 2017Sep;18(2):18.2.48. https://doi.org/10.1128/jmbe.v18i2.1348Search in Google Scholar
Wulandari M, Effendi AJ. Effect of frequency and ratio solid liquid on ultrasonic remediation of petroleum contaminated soil. AIP Conf Proc. 2018 Sep;2014(1):020120-1–020120-7. https://doi.org/10.1063/1.5054524WulandariMEffendiAJ.Effect of frequency and ratio solid liquid on ultrasonic remediation of petroleum contaminated soil. . 2018Sep;2014(1):020120-1–020120-7. https://doi.org/10.1063/1.5054524Search in Google Scholar
Xu J, Zhang Q, Li D, Du J, Wang C, Qin J. Rapid degradation of long-chain crude oil in soil by indigenous bacteria using fermented food waste supernatant. Waste Manag. 2019 Feb;85:361–373. https://doi.org/10.1016/j.wasman.2018.12.041XuJZhangQLiDDuJWangCQinJ.Rapid degradation of long-chain crude oil in soil by indigenous bacteria using fermented food waste supernatant. . 2019Feb;85:361–373. https://doi.org/10.1016/j.wasman.2018.12.041Search in Google Scholar
Zehnle H, Otersen C, Benito Merino D, Wegener G. Potential for the anaerobic oxidation of benzene and naphthalene in thermophilic microorganisms from the Guaymas Basin. Front Microbiol. 2023 Sep;14:1279865. https://doi.org/10.3389/fmicb.2023.1279865ZehnleHOtersenCBenito MerinoDWegenerG.Potential for the anaerobic oxidation of benzene and naphthalene in thermophilic microorganisms from the Guaymas Basin. . 2023Sep;14:1279865. https://doi.org/10.3389/fmicb.2023.1279865Search in Google Scholar
Zhang X, Kong D, Liu X, Xie H, Lou X, Zeng C. Combined microbial degradation of crude oil under alkaline conditions by Acinetobacter baumannii and Talaromyces sp. Chemosphere. 2021 Jun; 273: 129666. https://doi.org/10.1016/j.chemosphere.2021.129666ZhangXKongDLiuXXieHLouXZengC.Combined microbial degradation of crude oil under alkaline conditions by Acinetobacter baumannii and Talaromyces sp. . 2021Jun; 273: 129666. https://doi.org/10.1016/j.chemosphere.2021.129666Search in Google Scholar
Zhao C, Dong Y, Feng Y, Li Y, Dong Y. Thermal desorption for remediation of contaminated soil: A review. Chemosphere. 2019 Apr; 221:841–855. https://doi.org/10.1016/j.chemosphere.2019.01.079ZhaoCDongYFengYLiYDongY.Thermal desorption for remediation of contaminated soil: A review. . 2019Apr; 221:841–855. https://doi.org/10.1016/j.chemosphere.2019.01.079Search in Google Scholar
Zhou L, Li H, Zhang Y, Han S, Xu H.Sphingomonas from petroleum-contaminated soils in Shenfu, China and their PAHs degradation abilities. Braz J Microbiol. 2016 Apr;47(2):271–278. https://doi.org/10.1016/j.bjm.2016.01.001ZhouLLiHZhangYHanSXuH.Sphingomonas from petroleum-contaminated soils in Shenfu, China and their PAHs degradation abilities. . 2016Apr;47(2):271–278. https://doi.org/10.1016/j.bjm.2016.01.001Search in Google Scholar
Zou X, Su Q, Yi Q, Guo L, Chen D, Wang B, Li Y, Li J. Determining the degradation mechanism and application potential of benzopyrene-degrading bacterium Acinetobacter XS-4 by screening. J Hazard Mater. 2023 Aug;456:131666. https://doi.org/10.1016/j.jhazmat.2023.131666ZouXSuQYiQGuoLChenDWangBLiYLiJ.Determining the degradation mechanism and application potential of benzopyrene-degrading bacterium Acinetobacter XS-4 by screening. . 2023Aug;456:131666. https://doi.org/10.1016/j.jhazmat.2023.131666Search in Google Scholar