Species | GH18 | GH17 | GH55 | GH64 | GH81 | GH75 | Total |
---|---|---|---|---|---|---|---|
Strain cr013 | 3 | 7 | 9 | 3 | 1 | 5 | 28 |
Trichoderma atroviride | 29 | 5 | 8 | 3 | 2 | 5 | 52 |
Trichoderma virens | 36 | 4 | 10 | 3 | 1 | 5 | 59 |
Trichoderma reesei | 20 | 4 | 10 | 3 | 1 | 5 | 43 |
Trichoderma harzianum | 20 | 4 | 5 | 3 | 2 | 4 | 38 |
Pathway | Genes with pathway annotation | Pathway ID |
---|---|---|
Metabolic pathways | 3,279 | ko01100 |
Biosynthesis of secondary metabolites | 1,153 | ko01110 |
Biosynthesis of antibiotics | 816 | ko01130 |
MAPK signaling pathway – yeast | 404 | ko04011 |
Glycine, serine and threonine metabolism | 356 | ko00260 |
RNA transport | 304 | ko03013 |
Biosynthesis of amino acids | 288 | ko01230 |
Carbon metabolism | 280 | ko01200 |
Glycerophospholipid metabolism | 231 | ko00564 |
Meiosis – yeast | 230 | ko04113 |
Strain cr013 | Total | NR | Swissport | KEGG | COG | GO | CAZy | PHI | ARDB | Overall |
---|---|---|---|---|---|---|---|---|---|---|
Number | 14893 | 14003 | 8869 | 9768 | 2812 | 8924 | 710 | 20 | 1735 | 14,014 |
Percentage | 100% | 94.02% | 59.55% | 65.59% | 18.88% | 59.92% | 4.77% | 0.13% | 11.65% | 94.10% |
Other genes | Strain cr013 | Trichoderma atroviride | Trichoderma virens | Trichoderma reesei | Trichoderma harzianum |
---|---|---|---|---|---|
Cytochrome P450 | 234 | 69 | 120 | 73 | 120 |
Protease | 74 | 24 | 28 | 14 | 53 |
Zn2Cys6 transcription factor | 3 | 69 | 95 | 9 | 7 |
Feature | Strain cr013 | Trichoderma atroviride | Trichoderma virens | Trichoderma reesei | Trichoderma harzianum |
---|---|---|---|---|---|
Genome size (Mb) | 46.69 | 36.1 | 38.8 | 34.1 | 38.8 |
Number of scaffolds | 13 | 50 | 135 | 89 | 498 |
Scaffold N50 (Mb) | 6.39 | 2 | 1.8 | 1.2 | 6.2 |
GC content (%) | 52.1 | 49.5 | 49 | 52.5 | 49.5 |
Protein-coding genes | 14,893 | 11,865 | 12,518 | 9,143 | 11,264 |
Exons per gene | 2.95 | 2.93 | 2.98 | 3.06 | / |
Exon length (bp) | 498.14 | 528.17 | 506.13 | 507.81 | / |
Intron length (bp) | 113.76 | 104.20 | 104.95 | 119.64 | / |
Species | Ter- pene | NRPS | NRPS- like | T1 PKS | T3 PKS | Indole | NRPS-PKS | Bata- lactone | NRPS- terpene | RiPP | Indole- PKS | Total |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Strain cr013 | 6 | 9 | 15 | 19 | 1 | 2 | 6 | 1 | 2 | 1 | 2 | 64 |
10 | 11 | 16 | 24 | 1 | 4 | 4 | 2 | 2 | 1 | 75 | ||
10 | 12 | 14 | 18 | 1 | 3 | 5 | 1 | 1 | 2 | 67 | ||
8 | 10 | 10 | 12 | 4 | 44 | |||||||
10 | 16 | 11 | 14 | 6 | 1 | 1 | 59 | |||||
8 | 6 | 5 | 9 | 4 | 32 | |||||||
9 | 9 | 9 | 20 | 8 | 1 | 56 |