Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry for Identification of Microorganisms in Clinical Urine Specimens after Two Pretreatments
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Akoachere JFTK, Yvonne S, Akum NH, Seraphine EN. Etiologic profile and antimicrobial susceptibility of community-acquired urinary tract infection in two Cameroonian towns. BMC Res Notes. 2012 Dec;5(1):219. https://doi.org/10.1186/1756-0500-5-219AkoachereJFTKYvonneSAkumNHSeraphineEN. Etiologic profile and antimicrobial susceptibility of community-acquired urinary tract infection in two Cameroonian towns. . 2012Dec;5(1):219. https://doi.org/10.1186/1756-0500-5-21910.1186/1756-0500-5-219352874422564344Search in Google Scholar
Croxatto A, Prod’hom G, Greub G. Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology. FEMS Microbiol Rev. 2012 Mar;36(2):380–407. https://doi.org/10.1111/j.1574-6976.2011.00298.xCroxattoAProd’homGGreubG. Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology. . 2012Mar;36(2):380–407. https://doi.org/10.1111/j.1574-6976.2011.00298.x10.1111/j.1574-6976.2011.00298.x22092265Search in Google Scholar
Bizzini A, Jaton K, Romo D, Bille J, Prod’hom G, Greub G. Matrix-assisted laser desorption ionization-time of flight mass spectrometry as an alternative to 16S rRNA gene sequencing for identification of difficult-to-identify bacterial strains. J Clin Microbiol. 2011 Feb 01;49(2):693–696. https://doi.org/10.1128/JCM.01463-10BizziniAJatonKRomoDBilleJProd’homGGreubG. Matrix-assisted laser desorption ionization-time of flight mass spectrometry as an alternative to 16S rRNA gene sequencing for identification of difficult-to-identify bacterial strains. . 2011Feb01;49(2):693–696. https://doi.org/10.1128/JCM.01463-1010.1128/JCM.01463-10304350121106794Search in Google Scholar
de Cueto M, Aliaga L, Alós JI, Canut A, Los-Arcos I, Martínez JA, Mensa J, Pintado V, Rodriguez-Pardo D, Yuste JR, et al. Executive summary of the diagnosis and treatment of urinary tract infection: Guidelines of the Spanish Society of Clinical Microbiology and Infectious Diseases (SEIMC). Enferm Infecc Microbiol Clin. 2017 May;35(5):314–320. https://doi.org/10.1016/j.eimc.2016.11.005de CuetoMAliagaLAlósJICanutALos-ArcosIMartínezJAMensaJPintadoVRodriguez-PardoDYusteJR, Executive summary of the diagnosis and treatment of urinary tract infection: Guidelines of the Spanish Society of Clinical Microbiology and Infectious Diseases (SEIMC). . 2017May;35(5):314–320. https://doi.org/10.1016/j.eimc.2016.11.00510.1016/j.eimc.2016.11.00528017477Search in Google Scholar
Dierig A, Frei R, Egli A. The fast route to microbe identification: matrix assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS). Pediatr Infect Dis J. 2015 Jan; 34(1): 97–99. https://doi.org/10.1097/INF.0000000000000601DierigAFreiREgliA. The fast route to microbe identification: matrix assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS). . 2015Jan; 34(1): 97–99. https://doi.org/10.1097/INF.000000000000060110.1097/INF.000000000000060125741802Search in Google Scholar
Flores-Mireles AL, Walker JN, Caparon M, Hultgren SJ. Urinary tract infections: epidemiology, mechanisms of infection and treatment options. Nat Rev Microbiol. 2015 May;13(5):269–284. https://doi.org/10.1038/nrmicro3432Flores-MirelesALWalkerJNCaparonMHultgrenSJ. Urinary tract infections: epidemiology, mechanisms of infection and treatment options. . 2015May;13(5):269–284. https://doi.org/10.1038/nrmicro343210.1038/nrmicro3432445737725853778Search in Google Scholar
Hsu D, Melzer M. Strategy to reduce E. coli bacteraemia based on cohort data from a London teaching hospital. Postgrad Med J. 2018 Apr;94(1110):212–215. https://doi.org/10.1136/postgradmedj-2017-135454HsuDMelzerM. Strategy to reduce E. coli bacteraemia based on cohort data from a London teaching hospital. . 2018Apr;94(1110):212–215. https://doi.org/10.1136/postgradmedj-2017-13545410.1136/postgradmedj-2017-13545429463684Search in Google Scholar
Klein RD, Hultgren SJ. Urinary tract infections: microbial pathogenesis, host–pathogen interactions and new treatment strategies. Nat Rev Microbiol. 2020 Apr;18(4):211–226. https://doi.org/10.1038/s41579-020-0324-0KleinRDHultgrenSJ. Urinary tract infections: microbial pathogenesis, host–pathogen interactions and new treatment strategies. . 2020Apr;18(4):211–226. https://doi.org/10.1038/s41579-020-0324-010.1038/s41579-020-0324-0794278932071440Search in Google Scholar
Korbel L, Howell M, Spencer JD. The clinical diagnosis and management of urinary tract infections in children and adolescents. Paediatr Int Child Health. 2017 Oct 02;37(4):273–279. https://doi.org/10.1080/20469047.2017.1382046KorbelLHowellMSpencerJD. The clinical diagnosis and management of urinary tract infections in children and adolescents. . 2017Oct02;37(4):273–279. https://doi.org/10.1080/20469047.2017.138204610.1080/20469047.2017.138204628978286Search in Google Scholar
Manickam K, Karlowsky JA, Adam H, Lagacé-Wiens PRS, Rendina A, Pang P, Murray BL, Alfa MJ. CHROMagar Orientation medium reduces urine culture workload. J Clin Microbiol. 2013 Apr 01;51(4):1179–1183. https://doi.org/10.1128/JCM.02877-12ManickamKKarlowskyJAAdamHLagacé-WiensPRSRendinaAPangPMurrayBLAlfaMJ. CHROMagar Orientation medium reduces urine culture workload. . 2013Apr01;51(4):1179–1183. https://doi.org/10.1128/JCM.02877-1210.1128/JCM.02877-12366679723363839Search in Google Scholar
Nomura F. Proteome-based bacterial identification using matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS): A revolutionary shift in clinical diagnostic microbiology. Biochimica et Biophysica Acta (BBA) – Proteins and Proteomics. 2015 Jun;1854(6):528–537. https://doi.org/10.1016/j.bbapap.2014.10.022NomuraF. Proteome-based bacterial identification using matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS): A revolutionary shift in clinical diagnostic microbiology. . 2015Jun;1854(6):528–537. https://doi.org/10.1016/j.bbapap.2014.10.02210.1016/j.bbapap.2014.10.022Search in Google Scholar
Nomura F, Tsuchida S, Murata S, Satoh M, Matsushita K. Mass spectrometry-based microbiological testing for blood stream infection. Clin Proteomics. 2020 Dec;17(1):14. https://doi.org/10.1186/s12014-020-09278-7NomuraFTsuchidaSMurataSSatohMMatsushitaK. Mass spectrometry-based microbiological testing for blood stream infection. . 2020Dec;17(1):14. https://doi.org/10.1186/s12014-020-09278-710.1186/s12014-020-09278-7Search in Google Scholar
Oviaño M, Ramírez CL, Barbeyto LP, Bou G. Rapid direct detection of carbapenemase-producing Enterobacteriaceae in clinical urine samples by MALDI-TOF MS analysis. J Antimicrob Chemother. 2017 May 1;72(5):1350–1354. https://doi.org/10.1093/jac/dkw579OviañoMRamírezCLBarbeytoLPBouG. Rapid direct detection of carbapenemase-producing Enterobacteriaceae in clinical urine samples by MALDI-TOF MS analysis. . 2017May1;72(5):1350–1354. https://doi.org/10.1093/jac/dkw57910.1093/jac/dkw579Search in Google Scholar
Sauget M, Valot B, Bertrand X, Hocquet D. Can MALDI-TOF mass spectrometry reasonably type bacteria? Trends Microbiol. 2017 Jun;25(6):447–455. https://doi.org/10.1016/j.tim.2016.12.006SaugetMValotBBertrandXHocquetD. Can MALDI-TOF mass spectrometry reasonably type bacteria?. 2017Jun;25(6):447–455. https://doi.org/10.1016/j.tim.2016.12.00610.1016/j.tim.2016.12.006Search in Google Scholar
Sood A, Penna FJ, Eleswarapu S, Pucheril D, Klett DE, Abd-El-Barr A-E-R, Abdollah F, Lakshmanan Y, Menon M, Trinh Q-D, et al. 503 Incidence, admission rates and economic burden of pediatric emergency department visits for urinary tract infection. Eur Urol Suppl. 2015 Apr;14(2):e503–e503a. https://doi.org/10.1016/S1569-9056(15)60496-1SoodAPennaFJEleswarapuSPucherilDKlettDEAbd-El-BarrA-E-RAbdollahFLakshmananYMenonMTrinhQ-D, 503 Incidence, admission rates and economic burden of pediatric emergency department visits for urinary tract infection. . 2015Apr;14(2):e503–e503a. https://doi.org/10.1016/S1569-9056(15)60496-110.1016/S1569-9056(15)60496-1Search in Google Scholar
Sun C, Zhang X, Wang J, Cheng C, Kang H, Gu B, Ma P. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry combined with UF-5000i urine flow cytometry to directly identify pathogens in clinical urine specimens within 1 hour. Ann Transl Med. 2020 May;8(9):602–611. https://doi.org/10.21037/atm.2019.10.73SunCZhangXWangJChengCKangHGuBMaP. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry combined with UF-5000i urine flow cytometry to directly identify pathogens in clinical urine specimens within 1 hour. . 2020May;8(9):602–611. https://doi.org/10.21037/atm.2019.10.7310.21037/atm.2019.10.73729053132566628Search in Google Scholar
Vincent CR, Thomas TL, Reyes L, White CL, Canales BK, Brown MB. Symptoms and risk factors associated with first urinary tract infection in college age women: a prospective cohort study. J Urol. 2013 Mar;189(3):904–910. https://doi.org/10.1016/j.juro.2012.09.087VincentCRThomasTLReyesLWhiteCLCanalesBKBrownMB. Symptoms and risk factors associated with first urinary tract infection in college age women: a prospective cohort study. . 2013Mar;189(3):904–910. https://doi.org/10.1016/j.juro.2012.09.08710.1016/j.juro.2012.09.08723017515Search in Google Scholar
Wang XH, Zhang G, Fan YY, Yang X, Sui WJ, Lu XX. Direct identification of bacteria causing urinary tract infections by combining matrix-assisted laser desorption ionization-time of flight mass spectrometry with UF-1000i urine flow cytometry. J Microbiol Methods. 2013 Mar;92(3):231–235. https://doi.org/10.1016/j.mimet.2012.12.016WangXHZhangGFanYYYangXSuiWJLuXX. Direct identification of bacteria causing urinary tract infections by combining matrix-assisted laser desorption ionization-time of flight mass spectrometry with UF-1000i urine flow cytometry. . 2013Mar;92(3):231–235. https://doi.org/10.1016/j.mimet.2012.12.01610.1016/j.mimet.2012.12.01623305925Search in Google Scholar
Zboromyrska Y, Rubio E, Alejo I, Vergara A, Mons A, Campo I, Bosch J, Marco F, Vila J. Development of a new protocol for rapid bacterial identification and susceptibility testing directly from urine samples. Clin Microbiol Infect. 2016 Jun;22(6):561.e1–561.e6. https://doi.org/10.1016/j.cmi.2016.01.025ZboromyrskaYRubioEAlejoIVergaraAMonsACampoIBoschJMarcoFVilaJ. Development of a new protocol for rapid bacterial identification and susceptibility testing directly from urine samples. . 2016Jun;22(6):561.e1–561.e6. https://doi.org/10.1016/j.cmi.2016.01.02510.1016/j.cmi.2016.01.02526899829Search in Google Scholar