This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Albareda M, Manyani H, Imperial J, Brito B, Ruiz-Argüeso T, Böck A, Palacios JM. Dual role of HupF in the biosynthesis of [NiFe] hydrogenase in Rhizobium leguminosarum. BMC Microbiol. 2012;12(1):256–256. https://doi.org/10.1186/1471-2180-12-256AlbaredaMManyaniHImperialJBritoBRuiz-ArgüesoTBöckAPalaciosJM.Dual role of HupF in the biosynthesis of [NiFe] hydrogenase in Rhizobium leguminosarum. BMC Microbiol.2012;12(1):256–256. https://doi.org/10.1186/1471-2180-12-25610.1186/1471-2180-12-256353440123136881Search in Google Scholar
Allen MB, Arnon DI. Studies on nitrogen-fixing blue-green algae. I. Growth and nitrogen fixation by Anabaena cylindrica Lemm. Plant Physiol. 1955 Jul 01;30(4):366–372., https://doi.org/10.1104/pp.30.4.366AllenMBArnonDI.Studies on nitrogen-fixing blue-green algae. I. Growth and nitrogen fixation by Anabaena cylindrica Lemm. Plant Physiol.1955Jul 01;30(4):366–372., https://doi.org/10.1104/pp.30.4.36610.1104/pp.30.4.36654066416654787Search in Google Scholar
Barnett MJ, Bittner AN, Toman CJ, Oke V, Long SR. Dual RpoH sigma factors and transcriptional plasticity in a symbiotic bacterium. J Bacteriol. 2012 Sep 15;194(18):4983–4994. https://doi.org/10.1128/JB.00449-12BarnettMJBittnerANTomanCJOkeVLongSR.Dual RpoH sigma factors and transcriptional plasticity in a symbiotic bacterium. J Bacteriol.2012Sep 15;194(18):4983–4994. https://doi.org/10.1128/JB.00449-1210.1128/JB.00449-12343034622773790Search in Google Scholar
Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, et al. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Proc Natl Acad Sci USA. 2001 Aug 14;98(17):9883–9888. https://doi.org/10.1073/pnas.161294798BarnettMJFisherRFJonesTKompCAbolaAPBarloy-HublerFBowserLCapelaDGalibertFGouzyJ, Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Proc Natl Acad Sci USA.2001Aug 14;98(17):9883–9888. https://doi.org/10.1073/pnas.16129479810.1073/pnas.1612947985554711481432Search in Google Scholar
Bobik C, Meilhoc E, Batut J. FixJ: a major regulator of the oxygen limitation response and late symbiotic functions of Sinorhizobium meliloti. J Bacteriol. 2006 Jul 01;188(13):4890–4902. https://doi.org/10.1128/JB.00251-06BobikCMeilhocEBatutJ.FixJ: a major regulator of the oxygen limitation response and late symbiotic functions of Sinorhizobium meliloti. J Bacteriol.2006Jul 01;188(13):4890–4902. https://doi.org/10.1128/JB.00251-0610.1128/JB.00251-06148299316788198Search in Google Scholar
Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, et al. Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021. Proc Natl Acad Sci USA. 2001 Aug 14;98(17): 9877–9882. https://doi.org/10.1073/pnas.161294398CapelaDBarloy-HublerFGouzyJBotheGAmpeFBatutJBoistardPBeckerABoutryMCadieuE, Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021. Proc Natl Acad Sci USA.2001Aug 14;98(17): 9877–9882. https://doi.org/10.1073/pnas.16129439810.1073/pnas.1612943985554611481430Search in Google Scholar
Chien CT, Rupp R, Beck S, Orser CS. Proline auxotrophic and catabolic mutants of Rhizobium leguminosarum biovar viciae strain C1204b are unaffected in nitrogen fixation. FEMS Microbiol Lett. 1991 Jan;77(2–3):299–302. https://doi.org/10.1111/j.1574-6968.1991.tb04365.xChienCTRuppRBeckSOrserCS.Proline auxotrophic and catabolic mutants of Rhizobium leguminosarum biovar viciae strain C1204b are unaffected in nitrogen fixation. FEMS Microbiol Lett.1991Jan;77(2–3):299–302. https://doi.org/10.1111/j.1574-6968.1991.tb04365.x10.1111/j.1574-6968.1991.tb04365.xSearch in Google Scholar
Cunningham SD, Kapulnik Y, Phillips DA. Distribution of hydrogen-metabolizing bacteria in Alfalfa field soil. Appl Environ Microbiol. 1986;52(5):1091–1095. https://doi.org/10.1128/AEM.52.5.1091-1095.1986CunninghamSDKapulnikYPhillipsDA.Distribution of hydrogen-metabolizing bacteria in Alfalfa field soil. Appl Environ Microbiol.1986;52(5):1091–1095. https://doi.org/10.1128/AEM.52.5.1091-1095.198610.1128/aem.52.5.1091-1095.198623917816347207Search in Google Scholar
Defez R, Esposito R, Angelini C, Bianco C. Overproduction of indole-3-acetic acid in free-living Rhizobia induces transcriptional changes resembling those occurring in nodule bacteroids. Mol Plant Microbe Interact. 2016 Jun;29(6):484–495. https://doi.org/10.1094/MPMI-01-16-0010-RDefezREspositoRAngeliniCBiancoC.Overproduction of indole-3-acetic acid in free-living Rhizobia induces transcriptional changes resembling those occurring in nodule bacteroids. Mol Plant Microbe Interact.2016Jun;29(6):484–495. https://doi.org/10.1094/MPMI-01-16-0010-R10.1094/MPMI-01-16-0010-R27003799Search in Google Scholar
Dong Z, Wu L, Kettlewell B, Caldwell CD, Layzell DB. Hydrogen fertilization of soils – is this a benefit of legumes in rotation? Plant Cell Environ. 2003 Nov;26(11):1875–1879. https://doi.org/10.1046/j.1365-3040.2003.01103.xDongZWuLKettlewellBCaldwellCDLayzellDB.Hydrogen fertilization of soils – is this a benefit of legumes in rotation?Plant Cell Environ.2003Nov;26(11):1875–1879. https://doi.org/10.1046/j.1365-3040.2003.01103.x10.1046/j.1365-3040.2003.01103.xSearch in Google Scholar
Elboutahiri N, Thami-Alami I, Udupa SM. Phenotypic and genetic diversity in Sinorhizobium meliloti and S. medicae from drought and salt affected regions of Morocco. BMC Microbiol. 2010;10(1):15–0. https://doi.org/10.1186/1471-2180-10-15ElboutahiriNThami-AlamiIUdupaSM.Phenotypic and genetic diversity in Sinorhizobium meliloti and S. medicae from drought and salt affected regions of Morocco. BMC Microbiol.2010;10(1):15–0. https://doi.org/10.1186/1471-2180-10-1510.1186/1471-2180-10-15Search in Google Scholar
Galibert F, Finan TM, Long SR, Pühler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, et al. The composite genome of the legume symbiont Sinorhizobium meliloti. Science. 2001 Jul 27;293(5530):668–672. https://doi.org/10.1126/science.1060966GalibertFFinanTMLongSRPühlerAAbolaPAmpeFBarloy-HublerFBarnettMJBeckerABoistardP, The composite genome of the legume symbiont Sinorhizobium meliloti. Science.2001Jul 27;293(5530):668–672. https://doi.org/10.1126/science.106096610.1126/science.1060966Search in Google Scholar
Golding AL. H2-oxidizing, plant growth promoting rhizobacteria as seed inoculants for barley. Halifax (Canada): Saint Mary’s University; 2009.GoldingAL.H2-oxidizing, plant growth promoting rhizobacteria as seed inoculants for barley. Halifax (Canada): Saint Mary’s University; 2009.Search in Google Scholar
Hesterman OB, Sheaffer CC, Barnes DK, Lueschen WE, Ford JH. Alfalfa dry matter and nitrogen production and fertilizer nitrogen response in leguminous-corn rotation. Agron J. 1986 Jan;78(1):19–23. https://doi.org/10.2134/agronj1986.00021962007800010005xHestermanOBSheafferCCBarnesDKLueschenWEFordJH.Alfalfa dry matter and nitrogen production and fertilizer nitrogen response in leguminous-corn rotation. Agron J.1986Jan;78(1):19–23. https://doi.org/10.2134/agronj1986.00021962007800010005x10.2134/agronj1986.00021962007800010005xSearch in Google Scholar
Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 2000;28:27–30.KanehisaMGotoS.KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res.2000;28:27–30.10.1093/nar/28.1.27Search in Google Scholar
Kärst U, Suetin S, Friedrich CG. Purification and properties of a protein linked to the soluble hydrogenase of hydrogen-oxidizing bacteria. J Bacteriol. 1987;169(5):2079–2085. https://doi.org/10.1128/JB.169.5.2079-2085.1987KärstUSuetinSFriedrichCG.Purification and properties of a protein linked to the soluble hydrogenase of hydrogen-oxidizing bacteria. J Bacteriol.1987;169(5):2079–2085. https://doi.org/10.1128/JB.169.5.2079-2085.198710.1128/jb.169.5.2079-2085.1987Search in Google Scholar
La Favre JS, Focht DD. Conservation in soil of H2 liberated from N2 fixation by Hup-nodules. Appl Environ Microbiol. 1983;46(2): 304–311. https://doi.org/10.1128/AEM.46.2.304-311.1983La FavreJSFochtDD.Conservation in soil of H2 liberated from N2 fixation by Hup-nodules. Appl Environ Microbiol.1983;46(2): 304–311. https://doi.org/10.1128/AEM.46.2.304-311.198310.1128/aem.46.2.304-311.1983Search in Google Scholar
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012 Apr;9(4):357–359. https://doi.org/10.1038/nmeth.1923LangmeadBSalzbergSL.Fast gapped-read alignment with Bowtie 2. Nat Methods.2012Apr;9(4):357–359. https://doi.org/10.1038/nmeth.192310.1038/nmeth.1923Search in Google Scholar
Li J, Han S, Ding X, He T, Dai J, Yang S, Gai J. Comparative transcriptome analysis between the cytoplasmic male sterile line NJCMS1A and its maintainer NJCMS1B in soybean (Glycine max (L.) Merr.). PLoS One. 2015 May 18;10(5):e0126771. https://doi.org/10.1371/journal.pone.0126771LiJHanSDingXHeTDaiJYangSGaiJ.Comparative transcriptome analysis between the cytoplasmic male sterile line NJCMS1A and its maintainer NJCMS1B in soybean (Glycine max (L.) Merr.). PLoS One.2015May 18;10(5):e0126771. https://doi.org/10.1371/journal.pone.012677110.1371/journal.pone.0126771Search in Google Scholar
López M, Carbonero V, Cabrera E, Ruiz-Argüeso T. Effects of host on the expression of the H2-uptake hydrogenase of Rhizobium in legume nodules. Plant Sci Lett. 1983 Apr;29(2–3):191–199. https://doi.org/10.1016/0304-4211(83)90143-8LópezMCarboneroVCabreraERuiz-ArgüesoT.Effects of host on the expression of the H2-uptake hydrogenase of Rhizobium in legume nodules. Plant Sci Lett.1983Apr;29(2–3):191–199. https://doi.org/10.1016/0304-4211(83)90143-810.1016/0304-4211(83)90143-8Search in Google Scholar
McLearn N, Dong Z. Microbial nature of the hydrogen-oxidizing agent in hydrogen-treated soil. Biol Fertil Soils. 2002 Jul 1;35(6): 465–469. https://doi.org/10.1007/s00374-002-0495-zMcLearnNDongZ.Microbial nature of the hydrogen-oxidizing agent in hydrogen-treated soil. Biol Fertil Soils.2002Jul 1;35(6): 465–469. https://doi.org/10.1007/s00374-002-0495-z10.1007/s00374-002-0495-zSearch in Google Scholar
Millar AH, Day DA, Bergersen FJ. Microaerobic respiration and oxidative phosphorylation by soybean nodule mitochondria: implications for nitrogen fixation. Plant Cell Environ. 1995 Jul; 18(7): 715–726. https://doi.org/10.1111/j.1365-3040.1995.tb00574.xMillarAHDayDABergersenFJ.Microaerobic respiration and oxidative phosphorylation by soybean nodule mitochondria: implications for nitrogen fixation. Plant Cell Environ.1995Jul; 18(7): 715–726. https://doi.org/10.1111/j.1365-3040.1995.tb00574.x10.1111/j.1365-3040.1995.tb00574.xSearch in Google Scholar
Muller PY, Janovjak H, Miserez AR, Dobbie Z. Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques. 2002 Jun;32(6):1372–1374, 1376, 1378–1379.MullerPYJanovjakHMiserezARDobbieZ.Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques.2002Jun;32(6):1372–1374, 1376, 1378–1379.Search in Google Scholar
Osborne CA, Peoples MB, Janssen PH. Detection of a reproducible, single-member shift in soil bacterial communities exposed to low levels of hydrogen. Appl Environ Microbiol. 2010 Mar 01;76(5):1471–1479. https://doi.org/10.1128/AEM.02072-09OsborneCAPeoplesMBJanssenPH.Detection of a reproducible, single-member shift in soil bacterial communities exposed to low levels of hydrogen. Appl Environ Microbiol.2010Mar 01;76(5):1471–1479. https://doi.org/10.1128/AEM.02072-0910.1128/AEM.02072-09Search in Google Scholar
Parry R, Asgari S. Aedes anphevirus: an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells. J Virol. 2018 Jun 27;92(17):e00224-18. https://doi.org/10.1128/JVI.00224-18ParryRAsgariS.Aedes anphevirus: an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells. J Virol.2018Jun 27;92(17):e00224-18. https://doi.org/10.1128/JVI.00224-1810.1128/JVI.00224-18Search in Google Scholar
Provorov NA, Chuklina E, Vorob’ev NI, Onishchuk OP, Simarov BV. [Factor analysis of interactions between alfalfa nodule bacteria (Sinorhizobium meliloti) genes that regulate symbiotic nitrogen fixation] (in Russian). Genetika. 2013 Apr;49(4):448–453. https://doi.org/10.7868/s0016675813030156ProvorovNAChuklinaEVorob’evNIOnishchukOPSimarovBV.[Factor analysis of interactions between alfalfa nodule bacteria (Sinorhizobium meliloti) genes that regulate symbiotic nitrogen fixation] (in Russian). Genetika.2013Apr;49(4):448–453. https://doi.org/10.7868/s001667581303015610.7868/S0016675813030156Search in Google Scholar
Sokolova MG, Akimova GP, Nechaeva LV, Permyakov AV, Sobenin AM. The effect of inoculation with Rhizobium leguminosarum on the contents of cytoplasmic protein and free amino acids in the roots of pea seedlings. Appl Biochem Microbiol. 2007 May;43(3):268–273. https://doi.org/10.1134/S0003683807030064SokolovaMGAkimovaGPNechaevaLVPermyakovAVSobeninAM.The effect of inoculation with Rhizobium leguminosarum on the contents of cytoplasmic protein and free amino acids in the roots of pea seedlings. Appl Biochem Microbiol.2007May;43(3):268–273. https://doi.org/10.1134/S000368380703006410.1134/S0003683807030064Search in Google Scholar
Spaink HP. Root nodulation and infection factors produced by rhizobial bacteria. Annu Rev Microbiol. 2000 Oct;54(1):257–288. https://doi.org/10.1146/annurev.micro.54.1.257SpainkHP.Root nodulation and infection factors produced by rhizobial bacteria. Annu Rev Microbiol.2000Oct;54(1):257–288. https://doi.org/10.1146/annurev.micro.54.1.25710.1146/annurev.micro.54.1.257Search in Google Scholar
Taylor AB, Smith BS, Kitada S, Kojima K, Miyaura H, Otwinowski Z, Ito A, Deisenhofer J. Crystal structures of mitochondrial processing peptidase reveal the mode for specific cleavage of import signal sequences. Structure. 2001 Jul;9(7):615–625. https://doi.org/10.1016/S0969-2126(01)00621-9TaylorABSmithBSKitadaSKojimaKMiyauraHOtwinowskiZItoADeisenhoferJ.Crystal structures of mitochondrial processing peptidase reveal the mode for specific cleavage of import signal sequences. Structure.2001Jul;9(7):615–625. https://doi.org/10.1016/S0969-2126(01)00621-910.1016/S0969-2126(01)00621-9Search in Google Scholar
Vinson V. How a hydrogenase protects its active site. Science. 2017 Sep 01;357(6354);882–884. https://doi.org/10.1126/science.357.6354.882-nVinsonV.How a hydrogenase protects its active site. Science.2017Sep 01;357(6354);882–884. https://doi.org/10.1126/science.357.6354.882-n10.1126/science.357.6354.882-nSearch in Google Scholar
Vyatkina G, Bhatia V, Gerstner A, Papaconstantinou J, Garg N. Impaired mitochondrial respiratory chain and bioenergetics during chagasic cardiomyopathy development. Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease. 2004 Jun;1689(2): 162–173. https://doi.org/10.1016/j.bbadis.2004.03.005VyatkinaGBhatiaVGerstnerAPapaconstantinouJGargN.Impaired mitochondrial respiratory chain and bioenergetics during chagasic cardiomyopathy development. Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease.2004Jun;1689(2): 162–173. https://doi.org/10.1016/j.bbadis.2004.03.00510.1016/j.bbadis.2004.03.005Search in Google Scholar
Wang F, Wang C, Sun Y, Wang N, Li X, Dong Y, Yao N, Liu X, Chen H, Chen X, et al. Overexpression of vacuolar proton pump ATPase (V-H+–ATPase) subunits B, C and H confers tolerance to salt and saline-alkali stresses in transgenic alfalfa (Medicago sativa L.). J Integr Agric. 2016 Oct;15(10):2279–2289. https://doi.org/10.1016/S2095-3119(16)61399-0WangFWangCSunYWangNLiXDongYYaoNLiuXChenHChenX, Overexpression of vacuolar proton pump ATPase (V-H+–ATPase) subunits B, C and H confers tolerance to salt and saline-alkali stresses in transgenic alfalfa (Medicago sativa L.). J Integr Agric.2016Oct;15(10):2279–2289. https://doi.org/10.1016/S2095-3119(16)61399-010.1016/S2095-3119(16)61399-0Search in Google Scholar
Webb BA, Compton KK, Del Campo JSM, Taylor D, Sobrado P, Scharf BE. Sinorhizobium meliloti chemotaxis to multiple amino acids is mediated by the chemoreceptor McpU. Mol Plant Microbe Interact. 2017 Oct;30(10):770–777. https://doi.org/10.1094/MPMI-04-17-0096-RWebbBAComptonKKDel CampoJSMTaylorDSobradoPScharfBE.Sinorhizobium meliloti chemotaxis to multiple amino acids is mediated by the chemoreceptor McpU. Mol Plant Microbe Interact.2017Oct;30(10):770–777. https://doi.org/10.1094/MPMI-04-17-0096-R10.1094/MPMI-04-17-0096-R28745538Search in Google Scholar