The phytoseston flora and heterotrophic bacteria from the two intersecting rivers were studied during the intensive water flow (from October 2006 to May 2007). The physical and chemical measurements indicated that the water quality in the rivers regarding their purity, had slightly improved in the Nielba River and deteriorated in the Wełna River, at the sites behind the intersection zone. It was in the agreement with the studied phytoseston diatom communities (dominated by eutraphentic taxa). Phytoplankton during the winter months was dominated by