Molecular Characterization of the Emerging Sublineage IND2001E of Foot-and-Mouth Disease Virus Serotype O in Buffalo in Manikganj, Bangladesh

1 Kitching, R.P. (2002). Clinical variation in foot and mouth disease: cattle. Rev Sci Tech. 21(3): 499-502. https://doi.org/10.20506/rst.21.3.1343 PMid:12523690 Search in Google Scholar

2 Grubman, M.J., Baxt, B. (2004). Foot-and-mouth disease. Clin Microbiol Rev. 17(2): 465-493. https://doi.org/10.1128/CMR.17.2.465-493.2004 PMid:15084510 PMCid:PMC387408 Search in Google Scholar

3 Knight-Jones, T.J., Rushton, J. (2013). The economic impacts of foot and mouth disease-what are they, how big are they and where do they occur? Prev Vet Med. 112(3-4): 161-173. https://doi.org/10.1016/j.prevetmed.2013.07.013 PMid:23958457 PMCid:PMC3989032 Search in Google Scholar

4 Bijari, M., Sadeghi-Sefidmazgi, A., Ansari-Lari, M., Ghaffari, M.H. (2025). Productivity, reproduction and economic losses due to foot-and-mouth disease (FMD) in Iranian Holstein cows. Prev Vet Med. 238, 106471. https://doi.org/10.1016/j.prevetmed.2025.106471 PMid: 39978113 Search in Google Scholar

5 Giasuddin, M., Ali, M.Z., Sayeed, M.A., Islam, E. (2020). Financial loss due to foot and mouth disease outbreak in cattle in some affected areas of Bangladesh. Bangl J Lives Res. 27(1&2): 82-94. https://doi.org/10.3329/bjlr.v27i1.55172 Search in Google Scholar

6 Nandi, S.P., Rahman, M.Z., Momtaz, S., Sultana, M., Hossain, M.A. (2015). Emergence and distribution of foot‐and‐mouth disease virus serotype A and O in Bangladesh. Transbound Emerg Dis. 62(3): 328-331. https://doi.org/10.1111/tbed.12113 PMid:23734722 Search in Google Scholar

7 Hemadri, D., Tosh, C., Sanyal, A., Venkataramanan, R. (2002). Emergence of a new strain of type O foot-and-mouth disease vir us: its phylogenetic and evolutionary relationship with the PanAsia pandemic strain. Virus Genes. 25(1): 23-34. https://doi.org/10.1023/A:1020165923805 PMid:12206305 Search in Google Scholar

8 Subramaniam, S., Mohapatra, J.K., Das, B., Sanyal, A., Pattnaik, B. (2015). Genetic and antigenic analysis of foot-and-mouth disease vir us serotype O responsible for outbreaks in India during 2013. Infect Genet Evol. 30, 59-64. https://doi.org/10.1016/j.meegid.2014.12.009 PMid:25511252 Search in Google Scholar

9 Siddique, M.A., Ali, M.R., Alam, A.S.M.R.U., Ullah, H., Rahman, A., Chakrabarty, R.P., Amin, M.A., et al. (2018). Emergence of two novel sublineages Ind2001 BD 1 and Ind2001 BD 2 of foot-and-mouth disease virus serotype O in Bangladesh. Transbound Emerg Dis. 65(4): 1009-1023. https://doi.org/10.1111/tbed.12834 PMid:29457368 Search in Google Scholar

10 Subramaniam, S., Sanyal, A., Mohapatra, J.K., Sharma, G.K., Biswal, J.K., Ranjan, R., Rout, M., et al. (2013). Emergence of a novel lineage genetically divergent from the predominant Ind2001 lineage of serotype O foot-and-mouth disease virus in India. Infect Genet Evol. 18, 1-7. https://doi.org/10.1016/j.meegid.2013.04.027 PMid:23643555 Search in Google Scholar

11 Dahiya, S.S., Subramaniam, S., Biswal, J.K., Das, B., Prusty, B.R., Ali, S.Z., Khulape, S.A., et al. (2021). Genetic characterization of foot‐and‐mouth disease virus serotype O isolates collected during 2014-2018 revealed dominance of O/ME‐SA/Ind2001e and the emergence of a novel lineage in India. Transbound Emerg Dis. 68(6): 3498-3508. https://doi.org/10.1111/tbed.13954 PMid:33305514 Search in Google Scholar

12 Hossain, K.A., Anjume, H., Alam, K.M., Yeamin, A., Akter, S., Hossain, M.A., Sultana, M. (2023). Emergence of a novel sublineage, MYMBD21 under SA-2018 lineage of Foot-and-Mouth Disease Virus serotype O in Bangladesh. Sci Rep. 13(1): 9817. https://doi.org/10.1038/s41598-023-36830-w PMid:37330573 PMCid:PMC10276842 Search in Google Scholar

13 Hamid, M.A., Siddiky, M.N.A., Rahman, M.A., Hossain, K.M. (2016). Scopes and opportunities of buffalo farming in Bangladesh: A review. SAARC J Agri. 14(2): 63-77. https://doi.org/10.3329/sja.v14i2.31246 Search in Google Scholar

14 Habib, M.A., Rahman, M.S., Khatun, A., Ali, M.Y. (2023). The scenario of buffalo production and research in Bangladesh. J Buffalo Sci. 12, 28-37. https://doi.org/10.6000/1927-520X.2023.12.04 Search in Google Scholar

15 Samad, M. (2020). A systematic review of research findings on buffalo health and production published during the last six decades in Bangladesh. J Vet Med OH Res. 2(1): 1-62. https://doi.org/10.36111/jvmohr.2020.2(1).0016 Search in Google Scholar

16 Vangrysperre, W., De Clercq, K. (1996). Rapid and sensitive polymerase chain reaction based detection and typing of foot-and-mouth disease virus in clinical samples and cell culture isolates, combined with a simultaneous differentiation with other genomically and/or symptomatically related viruses. Arch Virol. 141(2): 331-344. https://doi.org/10.1007/BF01718403 PMid:8634024 Search in Google Scholar

17 Callens, M., De Clercq, K. (1997). Differentiation of the seven serotypes of foot-and-mouth disease virus by reverse transcriptase polymerase chain reaction. J Virol Methods. 67(1): 35-44. https://doi.org/10.1016/S0166-0934(97)00074-8 PMid:9274816 Search in Google Scholar

18 Amadori, M., Volpe, G., Defilippi, P., Berneri, C. (1997). Phenotypic features of BHK-21 cells used for production of foot-and-mouth disease vaccine. Biologicals. 25(1): 65-73. https://doi.org/10.1006/biol.1996.0061 PMid:9167010 Search in Google Scholar

19 Knowles, N.J., Wadsworth, J., Bachanek-Bankowska, K., King, D.P. (2016). VP1 sequencing protocol for foot and mouth disease virus molecular epidemiology. Rev Sci Tech. 35(3): 741-755. https://doi.org/10.20506/rst.35.3.2565 PMid:28332654 Search in Google Scholar

20 Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J. (1990). Basic local alignment search tool. J Mol Biol. 215(3): 403-410. https://doi.org/10.1016/S0022-2836(05)80360-2 PMid:2231712 Search in Google Scholar

21 Thompson, J.D., Higgins, D.G., Gibson, T.J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22): 4673-4680. https://doi.org/10.1093/nar/22.22.4673 PMid:7984417 PMCid:PMC308517 Search in Google Scholar

22 Tamura, K., Stecher, G., Kumar, S. (2021). MEGA11: Molecular evolutionary genetics analysis version 11. Mol Biol Evol. 38(7): 3022-3027. https://doi.org/10.1093/molbev/msab120 PMid:33892491 PMCid:PMC8233496 Search in Google Scholar

23 Tamura, K., Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10(3): 512-526. Search in Google Scholar

24 WAHID. (2009). OIE World Animal Health Database. c2024 [cited 2024 October 17]. https://wahis.woah.org/#/event-management Search in Google Scholar

25 Loth, L., Osmani, M.G., Kalam, M.A., Chakraborty, R.K., Wadsworth, J., Knowles, N.J., Hammond, J.M., Benigno, C. (2011). Molecular characterization of foot‐and‐mouth disease virus: implications for disease control in Bangladesh. Transbound Emerg Dis. 58(3): 240-246. https://doi.org/10.1111/j.1865-1682.2011.01206.x PMid:21320294 Search in Google Scholar

26 Michel, A.L., Bengis, R.G. (2012). The African buffalo: a villain for inter-species spread of infectious diseases in southern Africa. Onderstepoort J Vet Res. 79(2): 453. https://doi.org/10.4102/ojvr.v79i2.453 PMid:23327373 Search in Google Scholar

27 Ali, M.Z., Giasuddin, M. (2020). Detection of an emerging novel sublineage Ind2001BD1 and lineage PanAsia of foot-and-mouth disease virus serotype O in cattle in Manikgonj district of Bangladesh, 2018. Open Vet J. 10(3): 347-353. https://doi.org/10.4314/ovj.v10i3.14 Search in Google Scholar

28 Miguel, E., Grosbois, V., Fritz, H., Caron, A., de Garine‐Wichatitsky, M., Nicod, F., Loveridge, A.J., et al. (2017). Drivers of foot‐and‐mouth disease in cattle at wild/domestic interface: Insights from farmers, buffalo and lions. Divers Distrib. 23(9): 1018-1030. https://doi.org/10.1111/ddi.12585 PMid:32313434 PMCid:PMC7163638 Search in Google Scholar

29 Upadhyaya, S., Mahapatra, M., Mioulet, V., Parida, S. (2021). Molecular basis of antigenic drift in serotype O foot-and-mouth disease viruses (2013-2018) from Southeast Asia. Viruses. 13(9): 1886. https://doi.org/10.3390/v13091886 PMid:34578467 PMCid:PMC8473337 Search in Google Scholar

30 Brito, B.P., Rodriguez, L.L., Hammond, J.M., Pinto, J., Perez, A.M. (2017). Review of the global distribution of foot‐and‐mouth disease virus from 2007 to 2014. Transbound Emerg Dis. 64(2): 316-332. https://doi.org/10.1111/tbed.12373 PMid:25996568 Search in Google Scholar