This work is licensed under the Creative Commons Attribution 4.0 International License.
Abou-Shaara, H. (2019). Highlights on the Genetic Relationships Between Some Honey Bee Viruses Using Various Techniques. Journal of Applied Biotechnology Reports, 6(1), 15–19. https://doi.org/10.29252/JABR.06.01.03Abou-ShaaraH.2019Highlights on the Genetic Relationships Between Some Honey Bee Viruses Using Various TechniquesJournal of Applied Biotechnology Reports611519https://doi.org/10.29252/JABR.06.01.0310.29252/JABR.06.01.03Search in Google Scholar
Boncristiani, H., Underwood, R., Schwarz, R., Evans, J. D., Pettis, J., vanEngelsdorp, D. (2012). Direct effect of acaricides on pathogen loads and gene expression levels in honey bees Apis mellifera. Journal of Insect Physiology, 58(5), 613–620. https://doi.org/10.1016/j.jinsphys.2011.12.011BoncristianiH.UnderwoodR.SchwarzR.EvansJ.D.PettisJ.vanEngelsdorpD.2012Direct effect of acaricides on pathogen loads and gene expression levels in honey bees Apis melliferaJournal of Insect Physiology585613620https://doi.org/10.1016/j.jinsphys.2011.12.01110.1016/j.jinsphys.2011.12.01122212860Search in Google Scholar
Bowen-Walker, P. L., Martin, S. J., Gunn, A. (1999). The transmission of Deformed wing virus between honeybees (Apis mellifera L.) by the ectoparasitic mite Varroa jacobsoni Oud. Journal of Invertebrate Pathology, 73(1), 101–106. https://doi.org/10.1006/jipa.1998.4807Bowen-WalkerP.L.MartinS.J.GunnA.1999The transmission of Deformed wing virus between honeybees (Apis mellifera L.) by the ectoparasitic mite Varroa jacobsoni OudJournal of Invertebrate Pathology731101106https://doi.org/10.1006/jipa.1998.480710.1006/jipa.1998.48079878295Search in Google Scholar
Bustin, S. A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, ... Wittwer, C. T. (2009). The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments. Clinical Chemistry, 55(4), 611–622. https://doi.org/10.1373/clinchem.2008.112797BustinS.A.BenesV.GarsonJ.A.HellemansJ.HuggettJ.KubistaWittwerC. T.2009The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR ExperimentsClinical Chemistry554611622https://doi.org/10.1373/clinchem.2008.11279710.1373/clinchem.2008.11279719246619Search in Google Scholar
Bray, N. L., Pimentel, H., Melsted, P., Pachter, L. (2016). Near-optimal probabilistic RNA-seq quantification. Nature Biotechnology, 34(5), 525–527. https://doi.org/10.1038/nbt.3519BrayN.L.PimentelH.MelstedP.PachterL.2016Near-optimal probabilistic RNA-seq quantificationNature Biotechnology345525527https://doi.org/10.1038/nbt.351910.1038/nbt.351927043002Search in Google Scholar
Le Conte, Y., Ellis, M., Ritter, W. (2010). Varroa mites and honey bee health: Can Varroa explain part of the colony losses? Apidologie, 41(3), 353–363. https://doi.org/10.1051/apido/2010017Le ConteY.EllisM.RitterW.2010Varroa mites and honey bee health: Can Varroa explain part of the colony losses?Apidologie413353363https://doi.org/10.1051/apido/201001710.1051/apido/2010017Search in Google Scholar
de Miranda, J. R., & Genersch, E. (2010). Deformed wing virus. Journal of Invertebrate Pathology, 103, S48–S61. https://doi.org/10.1016/j.jip.2009.06.012de MirandaJ.R.GenerschE.2010Deformed wing virusJournal of Invertebrate Pathology103S48S61https://doi.org/10.1016/j.jip.2009.06.01210.1016/j.jip.2009.06.01219909976Search in Google Scholar
Di Prisco, G., Pennacchio, F., Caprio, E., Boncristiani, H. F., Evans, J. D., Chen, Y. 2011. (n.d.). Varroa destructor is an effective vector of Israeli acute paralysis virus in the honeybee, Apis mellifera. Journal of General Virology, 92(1), 151–155. https://doi.org/10.1099/vir.0.023853-0Di PriscoG.PennacchioF.CaprioE.BoncristianiH.F.EvansJ.D.ChenY.2011(n.d.).Varroa destructor is an effective vector of Israeli acute paralysis virus in the honeybee, Apis melliferaJournal of General Virology921151155https://doi.org/10.1099/vir.0.023853-010.1099/vir.0.023853-020926637Search in Google Scholar
Gisder, S., & Genersch, E. (2020). Direct Evidence for Infection of Varroa destructor Mites with the Bee-Pathogenic Deformed Wing Virus Variant B, but Not Variant A, via Fluorescence In Situ Hybridization Analysis. Journal of Virology. https://doi.org/10.1128/JVI.01786-20GisderS.GenerschE.2020Direct Evidence for Infection of Varroa destructor Mites with the Bee-Pathogenic Deformed Wing Virus Variant B, but Not Variant A, via Fluorescence In Situ Hybridization AnalysisJournal of Virologyhttps://doi.org/10.1128/JVI.01786-2010.1128/JVI.01786-20809282733298545Search in Google Scholar
Guzman-Novoa, E., Eccles, L., Calvete, Y., Mcgowan, J., Kelly, P. G., Correa-Benítez, A. (2010). Varroa destructor is the main culprit for the death and reduced populations of overwintered honey bee (Apis mellifera) colonies in Ontario, Canada. Apidologie, 41(4), 443–450. https://doi.org/10.1051/apido/2009076Guzman-NovoaE.EcclesL.CalveteY.McgowanJ.KellyP.G.Correa-BenítezA.2010Varroa destructor is the main culprit for the death and reduced populations of overwintered honey bee (Apis mellifera) colonies in Ontario, CanadaApidologie414443450https://doi.org/10.1051/apido/200907610.1051/apido/2009076Search in Google Scholar
Iqbal, J., & Mueller, U. (2007). Virus infection causes specific learning deficits in honeybee foragers. Proceedings of the Royal Society B: Biological Sciences, 274(1617), 1517–1521. https://doi.org/10.1098/rspb.2007.0022IqbalJ.MuellerU.2007Virus infection causes specific learning deficits in honeybee foragersProceedings of the Royal Society B: Biological Sciences274161715171521https://doi.org/10.1098/rspb.2007.002210.1098/rspb.2007.0022217615617439851Search in Google Scholar
Levin, S., Sela, N., Chejanovsky, N. (2016). Two novel viruses associated with the Apis mellifera pathogenic mite Varroa destructor. Scientific Reports, 6(1), 37710. https://doi.org/10.1038/srep37710LevinS.SelaN.ChejanovskyN.2016Two novel viruses associated with the Apis mellifera pathogenic mite Varroa destructorScientific Reports6137710https://doi.org/10.1038/srep3771010.1038/srep37710512158127883042Search in Google Scholar
McMenamin, A. J., & Genersch, E. (2015). Honey bee colony losses and associated viruses. Current Opinion in Insect Science, 8, 121–129. https://doi.org/10.1016/j.cois.2015.01.015McMenaminA.J.GenerschE.2015Honey bee colony losses and associated virusesCurrent Opinion in Insect Science8121129https://doi.org/10.1016/j.cois.2015.01.01510.1016/j.cois.2015.01.01532846659Search in Google Scholar
National Centre for Biotechnology Information (NCBI). (2021). Retrieved December 28, 2021, from https://www.ncbi.nlm.nih.gov/National Centre for Biotechnology Information (NCBI)2021Retrieved December 28, 2021, from https://www.ncbi.nlm.nih.gov/Search in Google Scholar
Natsopoulou, M. E., McMahon, D. P., Doublet, V., Frey, E., Rosenkranz, P., Paxton, R. J. (2017). The virulent, emerging genotype B of Deformed wing virus is closely linked to overwinter honeybee worker loss. Scientific Reports, 7(1), 5242. https://doi.org/10.1038/s41598-017-05596-3NatsopoulouM.E.McMahonD.P.DoubletV.FreyE.RosenkranzP.PaxtonR.J.2017The virulent, emerging genotype B of Deformed wing virus is closely linked to overwinter honeybee worker lossScientific Reports715242https://doi.org/10.1038/s41598-017-05596-310.1038/s41598-017-05596-3550792628701778Search in Google Scholar
Ontario Ministry of Agriculture, Food and Rural Affairs (OMAFRA). (2016). Ontario's Pollinator Health Action Plan. Retrieved December 23, 2021, from https://www.vaughan.ca/cityhall/environmental_sustainability/General%20Documents/Ontario%20Pollinator%20Health%20Action%20Plan.pdfOntario Ministry of Agriculture, Food and Rural Affairs (OMAFRA)2016Ontario's Pollinator Health Action PlanRetrieved December 23, 2021, from https://www.vaughan.ca/cityhall/environmental_sustainability/General%20Documents/Ontario%20Pollinator%20Health%20Action%20Plan.pdfSearch in Google Scholar
Powell, D. (2019). Drpowell/degust 4.1.1. Zenodo. Retrieved December 28, 2021, from https://doi.org/10.5281/zenodo.3501067PowellD.2019Drpowell/degust 4.1.1. ZenodoRetrieved December 28, 2021, from https://doi.org/10.5281/zenodo.3501067Search in Google Scholar
Robinson, M. D., McCarthy, D. J., Smyth, G. K. (2010). edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26(1), 139–140. https://doi.org/10.1093/bioinformatics/btp616RobinsonM.D.McCarthyD.J.SmythG.K.2010edgeR: A Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics261139140https://doi.org/10.1093/bioinformatics/btp61610.1093/bioinformatics/btp616279681819910308Search in Google Scholar
Ryabov, E. V., Childers, A. K., Chen, Y., Madella, S., Nessa, A., vanEngelsdorp, D., Evans, J. D. (2017). Recent spread of Varroa destructor virus-1, a honey bee pathogen, in the United States. Scientific Reports, 7(1), 17447. https://doi.org/10.1038/s41598-017-17802-3RyabovE.V.ChildersA.K.ChenY.MadellaS.NessaA.vanEngelsdorpD.EvansJ.D.2017Recent spread of Varroa destructor virus-1, a honey bee pathogen, in the United StatesScientific Reports7117447https://doi.org/10.1038/s41598-017-17802-310.1038/s41598-017-17802-3572722729234127Search in Google Scholar
Tithi, S. S., Aylward, F. O., Jensen, R. V., Zhang, L. (2018). FastViromeExplorer: A pipeline for virus and phage identification and abundance profiling in metagenomics data. PeerJ, 6, e4227. https://doi.org/10.7717/peerj.4227TithiS.S.AylwardF.O.JensenR.V.ZhangL.2018FastViromeExplorer: A pipeline for virus and phage identification and abundance profiling in metagenomics dataPeerJ6e4227https://doi.org/10.7717/peerj.422710.7717/peerj.4227576817429340239Search in Google Scholar
vanEngelsdorp, D., Evans, J. D., Saegerman, C., Mullin, C., Haubruge, E., Nguyen, B. K., Frazier, M., Frazier, J., Cox-Foster, D., Chen, Y., Underwood, R., Tarpy, D. R., Pettis, J. S. (2009). Colony Collapse Disorder: A Descriptive Study. PLoS ONE, 4(8), e6481. https://doi.org/10.1371/journal.pone.0006481vanEngelsdorpD.EvansJ.D.SaegermanC.MullinC.HaubrugeE.NguyenB.K.FrazierM.FrazierJ.Cox-FosterD.ChenY.UnderwoodR.TarpyD.R.PettisJ.S.2009Colony Collapse Disorder: A Descriptive StudyPLoS ONE48e6481https://doi.org/10.1371/journal.pone.000648110.1371/journal.pone.0006481271589419649264Search in Google Scholar
Wingett, S. W., & Andrews, S. (2018). FastQ Screen: A tool for multi-genome mapping and quality control (7:1338). F1000Research. https://doi.org/10.12688/f1000research.15931.2WingettS.W.AndrewsS.2018FastQ Screen: A tool for multi-genome mapping and quality control (7:1338)F1000Researchhttps://doi.org/10.12688/f1000research.15931.210.12688/f1000research.15931.1Search in Google Scholar
Wood, D. E., & Salzberg, S. L. (2014). Kraken: Ultrafast metagenomic sequence classification using exact alignments. Genome Biology, 15(3), R46. https://doi.org/10.1186/gb-2014-15-3-r46WoodD.E.SalzbergS.L.2014Kraken: Ultrafast metagenomic sequence classification using exact alignmentsGenome Biology153R46https://doi.org/10.1186/gb-2014-15-3-r4610.1186/gb-2014-15-3-r46405381324580807Search in Google Scholar