Features | SF | HF | BF | YF |
---|---|---|---|---|
Total raw reads (Mb) | 45.24 | 48.46 | 52.98 | 45.47 |
Total clean reads (Mb) | 44.47 | 47.55 | 52.10 | 44.63 |
Total clean bases (Gb) | 6.59 | 7.05 | 7.75 | 6.61 |
Clean reads Q20 (%) | 98.27 | 98.23 | 98.34 | 98.40 |
Clean reads Q30 (%) | 94.63 | 94.56 | 94.83 | 95.01 |
Clean reads (pair reads) | 22.24 | 23.78 | 26.05 | 22.31 |
Mapped reads | 16,378,830 | 17,511,187 | 19,200,458 | 16,316,551 |
Mapped ratio (%) | 73.66 | 73.66 | 73.69 | 73.13 |
Total number of transcripts | 159,687 | |||
Total number of unigenes | 69,453 | |||
Total sequence base | 197,307,177 | |||
Average length of transcripts | 1,236 | |||
N50 value of transcripts | 1,830 | |||
E90N50 value of transcripts | 1,921 | |||
GC (%) | 42.49 | |||
TransRate score | 0.30 | |||
BUSCO score | 60.1% (3.5%) |
Unigene | Annotation | FPKM-SF | FPKM-HF | FPKM-BF | FPKM-YF | Regulation |
---|---|---|---|---|---|---|
DN13707_c0_g2 | WD-repeat protein | 306.8 | 283.4 | 244.7 | 226.5 | Whole flowering |
DN14303_c2_g4 | WD-repeat protein | 90.3 | 97.0 | 97.2 | 101.5 | periods |
DN17014_c0_g2 | MYB_superfamily | 613.5 | 1,695.1 | 531.6 | 718.1 | |
DN20674_c0_g1 | WD-repeat protein | 121.4 | 131.1 | 136.2 | 67.3 | |
DN15014_c1_g1 | MYB_superfamily | 66.3 | 27.2 | 13.4 | 11.8 | Early flowering |
DN11279_c3_g3 | MYB_superfamily | 105.1 | 64.9 | 0.8 | 38.9 | periods |
DN19744_c1_g3 | MYB_superfamily | 160.6 | 132.0 | 45.9 | 53.1 | |
DN12166_c1_g8 | MYB_superfamily | 16.3 | 10.9 | 41.8 | 6.4 | Blossom periods in |
DN12860_c2_g5 | MYB_superfamily | 4.5 | 5.2 | 22.7 | 2.8 | ‘Dutch Red’ |
DN15887_c1_g3 | MYB_superfamily | 14.1 | 10.7 | 36.5 | 2.8 | |
DN22635_c0_g1 | MYB_superfamily | 7.1 | 11.2 | 26.8 | 3.3 | |
DN12661_c0_g1 | WD-repeat protein | 1.9 | 5.5 | 36.5 | 36.2 | Blossom periods |
DN21970_c4_g5 | MYB_superfamily | 15.3 | 121.8 | 220.9 | 298.7 |
seq_id | FPKM (<0.5) | FPKM (0.5–5) | FPKM (5–100) | FPKM (>100) | SUM (30.5) |
---|---|---|---|---|---|
SF_1 | 65,107 | 61,397 | 31,536 | 1,647 | 94,580 |
SF_2 | 62,631 | 63,656 | 31,774 | 1,626 | 97,056 |
SF_3 | 64,446 | 62,140 | 31,444 | 1,657 | 95,241 |
HF_1 | 80,443 | 49,508 | 27,811 | 1,925 | 79,244 |
HF_2 | 67,574 | 59,459 | 30,864 | 1,790 | 92,113 |
HF_3 | 65,607 | 60,672 | 31,696 | 1,712 | 94,080 |
BF_1 | 67,310 | 59,403 | 31,170 | 1,804 | 92,377 |
BF_2 | 66,614 | 60,394 | 30,896 | 1,783 | 93,073 |
BF_3 | 76,848 | 51,186 | 29,570 | 2,083 | 82,839 |
YF_1 | 76,226 | 51,191 | 30,451 | 1,819 | 83,461 |
YF_2 | 84,464 | 45,418 | 27,806 | 1,999 | 75,223 |
YF_3 | 82,758 | 46,325 | 28,622 | 1,982 | 76,929 |
Genes | Sequences (5′-3′) | Product size |
---|---|---|
ANR 12990 | CAGCTGAAGCAGATGCAGAG |
147 |
ANR 13257 | TCACATCATCCTCACCGTGT |
103 |
CHI 10857 | ACGGAGTTCTTCCAGAGCAA |
165 |
CHI 15898 | GCTCGAACACCTCCTTGAAC |
155 |
CHS 16695 | TGAGGGAGAACCCGAATATG |
161 |
CHS 17923 | ATGGCCTGAAGATGGATCAG |
186 |
DFR 16691 | TGCCCGTTTAACTCATTTCC |
101 |
DFR 14193 | GTGGTGTTCACCTCCTCGAT |
189 |
F3′5′H 8362 | CTCCTCCTCCGCTACCTTCT |
160 |
F3′5′H 16064 | ATGTGGAGGTTGCAGAGCTT |
80 |
F3H 14172 | ACGTTGATTGGACCGAACAT |
186 |
F3H 22055 | GCCTCTTGCATAGCTTCACC |
83 |
F3H 22236 | AAGGAGAAGTACGCGTCCAA |
184 |
MYB 11279 | TTTCTCCCATGCTGCTTTCT |
160 |
MYB 12860 | ACCCTATCGTCGAACCACTG |
174 |
MYB 15887 | CATCTTCCTCCTTGGAGCTG |
138 |
MYB 18449 | TTCCACTTGGACTTGCACTG |
110 |
MYB 12166 | GCCGTCCAAACACATCTTCT |
85 |
MYB 15014 | ATTTCTGCAGATGGCTTGCT |
99 |
MYB 17014 | CTACGGAGGAGGATGGATGA |
93 |
MYB 19744 | CGAAGAACACTGCACTGGAA |
190 |
MYB 21970 | GCACCGGTAAGTGCGTTAAT |
159 |
MYB 22635 | GTCGCAATAACCGACCATCT |
125 |
UFGT 12119 | TCGGCGATCAAGGTAGATTC |
137 |
UFGT 13065 | CGGAGGTAGCCATCAACAAT |
143 |
UFGT 13592 | CTGGAGCTAAGGAGCAAGGA |
118 |
WD 12661 | CAGTAGCCATGGCAGCTACA |
109 |
WD 13707 | CCAAAGAAGTCCAGCTCCTG |
91 |
WD 14303 | CAGGCGATGTGAAGAATTGA |
|
WD 20674 | TTCGTCCCTTTGAGTTTGCT |
Sample | Raw reads | Raw bases | Clean reads | Clean bases | Error rate (%) | Q20 (%) | Q30 (%) | GC content (%) | Accession number |
---|---|---|---|---|---|---|---|---|---|
BF_1 | 54,170,030 | 8,179,674,530 | 53,271,940 | 7,920,660,194 | 0.0243 | 98.33 | 94.81 | 48.94 | SRR17783056 |
BF_2 | 55,251,576 | 8,342,987,976 | 54,405,312 | 8,096,016,364 | 0.0241 | 98.41 | 94.99 | 48.87 | SRR17783055 |
BF_3 | 49,533,034 | 7,479,488,134 | 48,632,006 | 7,241,216,477 | 0.0244 | 98.29 | 94.7 | 49.33 | SRR17783054 |
HF_1 | 47,378,590 | 7,154,167,090 | 46,432,354 | 6,880,585,840 | 0.0248 | 98.14 | 94.35 | 50.69 | SRR17783059 |
HF_2 | 47,325,446 | 7,146,142,346 | 46,485,250 | 6,893,639,691 | 0.0244 | 98.27 | 94.67 | 49.13 | SRR17783058 |
HF_3 | 50,665,694 | 7,650,519,794 | 49,743,012 | 7,381,231,384 | 0.0244 | 98.28 | 94.67 | 48.55 | SRR17783057 |
SF_1 | 43,599,698 | 6,583,554,398 | 42,859,044 | 6,355,814,159 | 0.0247 | 98.16 | 94.36 | 48.96 | SRR17783064 |
SF_2 | 44,423,394 | 6,707,932,494 | 43,751,414 | 6,485,935,396 | 0.024 | 98.48 | 95.15 | 48.33 | SRR17783063 |
SF_3 | 47,696,422 | 7,202,159,722 | 46,810,850 | 6,927,255,232 | 0.0247 | 98.16 | 94.38 | 48.97 | SRR17783060 |
YF_1 | 45,005,912 | 6,795,892,712 | 44,227,366 | 6,543,730,785 | 0.0241 | 98.4 | 95 | 49.34 | SRR17783053 |
YF_2 | 47,249,416 | 7,134,661,816 | 46,353,918 | 6,861,606,053 | 0.0241 | 98.41 | 95.05 | 50.28 | SRR17783062 |
YF_3 | 44,148,530 | 6,666,428,030 | 43,297,006 | 6,412,165,282 | 0.0241 | 98.39 | 94.99 | 49.7 | SRR17783061 |
Unigene | Annotation | FPKM-SF | FPKM-HF | FPKM-BF | Log2 Ratio (BF/SF) | FPKM-YF | Log2 Ratio (BF/YF) |
---|---|---|---|---|---|---|---|
DN17923_c1_g3 | CHS-like protein | 2,593.0 | 1,906.1 | 185.4 | −3.80 | 2,667.3 | −3.8 |
DN16695_c0_g5 | CHS | 80.4 | 760.5 | 298.4 | 1.9 | 2,187.2 | −2.9 |
DN10857_c0_g4 | Probable chalcone – flavonone isomerase 3 isoform X1 (CHI) | 501.8 | 344.7 | 38.0 | −3.7 | 561.0 | −3.9 |
DN15898_c0_g1 | Chalcone – flavonone isomerase (CHI) | 152.8 | 139.5 | 20.0 | −2.9 | 237.0 | −3.6 |
DN14172_c2_g1 | F3H | 976.4 | 886.8 | 232.7 | −2.1 | 1,440.4 | −2.6 |
DN22055_c1_g3 | Flavonol synthase/F3H | 5.1 | 7.3 | 11.9 | 1.2 | 1.4 | 3.1 |
DN22236_c1_g1 | Flavonol synthase/F3H | 296.2 | 125.1 | 3.0 | −6.6 | 257.7 | −6.4 |
DN16064_c1_g1 | Flavonoid 3′,5′-hydroxylase 1-like (F3′5′H) | 1,422.9 | 1,389.6 | 1,138.9 | −0.3 | 64.0 | 4.2 |
DN8362_c0_g1 | Flavonoid 3′,5′-hydroxylase 1-like (F3′5′H) | 6.6 | 14.1 | 2.3 | −1.5 | 20.0 | −3.1 |
DN14193_c0_g5 | DFR | 7.5 | 8.8 | 2.4 | −1.6 | 18.5 | −2.9 |
DN16691_c4_g1 | DFR | 67.8 | 259.7 | 117.8 | −0.8 | 570.8 | −2.3 |
DN12990_c1_g6 | Anthocyanidin reductase (ANR) | 64.7 | 331.3 | 90.8 | 0.5 | 323.2 | −1.8 |
DN13257_c0_g1 | Anthocyanidin reductase (ANR) | 27.8 | 249.5 | 85.3 | 1.6 | 277.8 | −1.7 |
DN12119_c3_g2 | Anthocyanidin 3-O-glucosyltransferase 7-like flavonoid 3-O-glucosyltransferase (UFGT) | 191.51 | 222.9 | 58.1 | −1.7 | 250.3 | 0.38 |
DN13065_c1_g1 | Anthocyanin 3′-O-beta-glucosyltransferase-like (UFGT) | 3.74 | 2.6 | 0.24 | −4.0 | 11.2 | −5.54 |
DN13592_c1_g3 | Anthocyanidin 3-O-glucosyltransferase-like (UFGT) | 155.8 | 42.5 | 3.1 | −5.67 | 196.8 | −6.0 |
Unigene | Hit_name | Description | Identity (%) | Similarity (%) | KO | Paths | Swiss-Prot |
---|---|---|---|---|---|---|---|
DN13707_c0_g2 | XP_009415403.1 | WD-repeat protein | 88 | 95.3 | – | – | gi|74698589|sp|Q9Y7K5.2|YGI3_SCHPO |
DN14303_c2_g4 | ONM38806.1 | WD-repeat protein | 76.8 | 85.4 | K10752 | – | gi|22096353|sp|O22607.3|MSI4_ARATH |
DN17014_c0_g2 | XP_009404081.1 | MYB_superfamily | 88 | 91.6 | – | – | gi|115502385|sp|O80622.2|EXP15_ARATH |
DN20674_c0_g1 | XP_010931565.1 | WD-repeat protein | 79.7 | 91.5 | – | – | gi|75318693|sp|O80775.2|WDR55_ARATH |
DN15014_c1_g1 | XP_009385043.1 | MYB_superfamily | 54.9 | 63.7 | K14491 | map04075 | gi|75323583|sp|Q6H805.1|ORR24_ORYSJ |
DN11279_c3_g3 | XP_017696697.1 | MYB_superfamily | 95.6 | 97.8 | K09422 | – | gi|75317981|sp|O22264.1|MYB12_ARATH |
DN19744_c1_g3 | XP_009418439.1 | MYB_superfamily | 76.3 | 82.4 | – | – | gi|75330977|sp|Q8S9H7.1|DIV_ANTMA |
DN12166_c1_g8 | XP_016205675.1 | MYB_superfamily | 86.2 | 92.6 | K09422 | – | gi|56749347|sp|Q8LPH6.1|MYB86_ARATH |
DN12860_c2_g5 | XP_023531843.1 | MYB_superfamily | 49.8 | 59.8 | K09422 | – | gi|75333993|sp|Q9FKL2.1|MYB36_ARATH |
DN15887_c1_g3 | XP_009408601.1 | MYB_superfamily | 44.7 | 55 | – | – | gi|75338846|sp|Q9ZQ85.2|EFM_ARATH |
DN22635_c0_g1 | PSS31516.1 | MYB_superfamily | 66.9 | 74.4 | K09422 | – | gi|75335856|sp|Q9M2Y9.1|RAX3_ARATH |
DN12661_c0_g1 | XP_009389455.1 | WD-repeat protein | 72.9 | 78.9 | K14963 | – | gi|82232080|sp|Q5M786.1|WDR5_XENTR |
DN21970_c4_g5 | XP_009405310.1 | MYB_superfamily | 59.5 | 66.4 | – | – | gi|75330977|sp|Q8S9H7.1|DIV_ANTMA |
Transcript number (%) | Unigene number (%) | |
---|---|---|
NR | 104,303 (0.6532) | 34,189 (0.4923) |
Swiss-Prot | 82,193 (0.5147) | 26,589 (0.3828) |
Pfam | 73,262 (0.4588) | 24,101 (0.347) |
COG | 25,088 (0.1571) | 7,537 (0.1085) |
GO | 71,758 (0.4494) | 23,229 (0.3345) |
KEGG | 47,453 (0.2972) | 14,838 (0.2136) |
Total_anno | 1,05,993 (0.6638) | 35,183 (0.5066) |
Total | 1,59,687 (1) | 69,453 (1) |