Stage | Primers | Sequences | Temperature |
---|---|---|---|
EBNA-1-1 | 5'-TAG TCA GTC ATC ATC ATC CG-3' | 55 | |
EBNA-1-2 | 5'-GGG ATT TAT TCT TTA GTG CG-3' | ||
EBNA-1-3 | 5'-GCC ATT TTT CCA CCC TGT AG-3' | ||
EBNA-1-4 | 5'-ATT GAG GGC GTC TCC TAA CA-3' |
Codon | 487 | 492 | 499 | 502 | 520 | 524 | 528 | 529 | 533 | 553 | 585 | 588 | 594 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Pattern 1 | T5 | Val | Ser | Glu | Asn | Leu | Ile | Val | Pro | Ile | Pro | Thr | Ala | Lys |
Pattern 2 | T6 | ⋅ | · | · | · | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | Ile | ⋅ | ⋅ |
Pattern 3 | T77 | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | Ile | Gin | Leu | ⋅ | Ile | Pro | ⋅ |
Pattern 4 | T70 | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | Ile | Pro | ⋅ |
Pattern 5 | T75 | ⋅ | •/Cys | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | Ile | Pro | ⋅ |
Study 1 | GC4 | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ |
Study 2 | ⋅ | ⋅ | ⋅ | Thr | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ |
B95-8 | 109408 | 109409 | 109410 | 109423 | 109424 | 109425 | 109444 | 109445 | 109446 | 109447 | 109448 | 109449 | 109453 | 109454 | 109455 | 109507 | 109508 | 109509 | 109519 | 109520 | 109521 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
487 | 492 | 499 | 500 | 502 | 520 | 524 | |||||||||||||||
G | C | T | A | G | T | G | A | C | G | A | A | A | C | T | C | T | A | A | C | T | |
Ala | Ser | Asp | Glu | Thr | Leu | Thr | |||||||||||||||
T5 | ⋅ | T | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | G | ⋅ | ⋅ | ⋅ | ⋅ | A | ⋅ | ⋅ | ⋅ | C | ⋅ | T | ⋅ |
Val | * | Glu | * | Asn | + | ||||||||||||||||
T6 | ⋅ | T | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | G | ⋅ | ⋅ | ⋅ | ⋅ | A | ⋅ | ⋅ | ⋅ | C | ⋅ | T | ⋅ |
Val | * | Glu | * | Asn | + | ||||||||||||||||
T77 | ⋅ | T | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | G | ⋅ | ⋅ | ⋅ | ⋅ | A | ⋅ | ⋅ | ⋅ | ⋅ | T | ⋅ | |
Val | * | Glu | * | Asn | + | Ile | |||||||||||||||
T70 | ⋅ | T | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | ⋅ | G | ⋅ | ⋅ | ⋅ | ⋅ | A | ⋅ | ⋅ | ⋅ | ⋅ | T | ⋅ | |
Val | * | Glu | * | Asn | + | Ile | |||||||||||||||
T75 | ⋅ | T | ⋅ | T | ⋅ | ⋅ | ⋅ | ⋅ | G | ⋅ | ⋅ | ⋅ | ⋅ | A | ⋅ | ⋅ | ⋅ | ⋅ | T | ⋅ | |
Val | Cys | Glu | * | Asn | + | Ile |