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Journals
International Journal of Applied Mathematics and Computer Science
Volume 30 (2020): Issue 2 (June 2020)
Open Access
New models and algorithms for RNA pseudoknot order assignment
Tomasz Zok
Tomasz Zok
,
Jan Badura
Jan Badura
,
Sylwester Swat
Sylwester Swat
,
Kacper Figurski
Kacper Figurski
,
Mariusz Popenda
Mariusz Popenda
and
Maciej Antczak
Maciej Antczak
| Jul 04, 2020
International Journal of Applied Mathematics and Computer Science
Volume 30 (2020): Issue 2 (June 2020)
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Published Online:
Jul 04, 2020
Page range:
315 - 324
Received:
Jul 25, 2019
Accepted:
Mar 12, 2020
DOI:
https://doi.org/10.34768/amcs-2020-0024
Keywords
RNA pseudoknot order
,
conflict graph
,
vertex coloring
,
maximum independent set
,
integer programming
© 2020 Tomasz Zok et al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.
Tomasz Zok
Institute of Computing Science Poznan University of Technology
Poznan, Poland
Poznan Supercomputing and Networking Center
Poznan, Poland
Jan Badura
Institute of Computing Science Poznan University of Technology
Poznan, Poland
Sylwester Swat
Institute of Computing Science Poznan University of Technology
Poznan, Poland
Kacper Figurski
Poznan Supercomputing and Networking Center
Poznan, Poland
Mariusz Popenda
Institute of Bioorganic Chemistry, Polish Academy of Sciences
Poznan, Poland
Maciej Antczak
Institute of Computing Science Poznan University of Technology
Poznan, Poland
Institute of Bioorganic Chemistry, Polish Academy of Sciences
Poznan, Poland