[Amann R. (1995): In situ identification of microorganisms by whole cell hybridization with rRNA-targered nucleic acid probes, pp. 3.3.6./1-3.3.6./15. In Akerman A. D. L., van El sas J. D. & de Brui jn F. J. (eds): Molecular Microbial Ecology Manual. Kluwer Academic Publisher, Dordrecht, Netherlands.]Search in Google Scholar
[Araya R., Tani K., Takagi T., Yamaguchi N. & Nasu M. (2003): Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescence in situ hybridization and DGGE analysis. − FEMS Microbiol. Ecol. 43: 111-119.]Search in Google Scholar
[Balasté E. & Blanch A. R. (2010): Persistance of Bacteriodes species populations in a river as measured by molecular and culture techniques. − Appl. Environ. Microbiol. 76: 7608-7616.]Search in Google Scholar
[Baudišová D., Havel L. & Benáková A. (2008): The water quality in anthropogenically affected stream of Luzicka Nisa. Part 1 - Microbiological indicators. − VTEI 50(4/2008): 5-7.]Search in Google Scholar
[Bouvier T. & del Giorgio P.A. (2003): Factors influencing the detection of bacerial cells using fluorescence in situ hybridization (FISH): A quantitative review of published reports. − FEMS Microbiol. Ecol. 44:3-15.]Search in Google Scholar
[Brűmmer I. H. M., Fehr W. & Wagner-Dőbler I. (2000): Biofilm community Structure in Polluted rivers: Abundance of Dominant Phylogenetic groups over a Complete Annual Cycle. − Appl. Environ. Microbiol. 66(7): 3078-3082.10.1128/AEM.66.7.3078-3082.2000]Search in Google Scholar
[Kildare B. J., Leutenegger C. M., McSwain B. S., Bambic D. G., Rajal V. B. & Wuer tz S. (2007): 16 S r RNA-based assays for quantitative detection of universal, human-, cow-, and dog specific fecal Bacteriodales. A Bayesian approach. − Wat. Res. 41(16): 3701-3715.]Search in Google Scholar
[Kirchmann D. L. (2002): The ecology of Cytophaga-Flavobacterium in aquatic environments. − FEMS Microbiol. Ecol. 39: 91-100.]Search in Google Scholar
[Loy A., Maixner F., Wagner M. & Horn M. (2007): ProbeBase - an online resource for rRNA-targeted oligonucleotide probes: New features. − Nucl. Acids Res. 35: 800-804.10.1093/nar/gkl856]Search in Google Scholar
[Neef A. (in litt): Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. (Ph.D. thesis). Technische Universität München, 1997.]Search in Google Scholar
[Nielsen P. H., Daims H. & Lemmer H. (2009): FISH handbook for biological wastewater treatment, identification and quantification of microorganisms in activated sludge and biofilms by FISH. IWA Publishing, London, UK, 123 pp.10.2166/9781780401775]Search in Google Scholar
[Manz W., Amann R., Ludwig W., Wagner M. & Schlei fer K.-H. (1992): Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. − Syst. Appl. Microbiol. 15: 593-600.]Search in Google Scholar
[Manz W., Amann R., Ludwig W., Vancanneyt M. & Schlei fer , K.-H. (1996): Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga- Flavobacter-Bacteroides in the natural environment. − Microbiology 142(5): 1097-1106.10.1099/13500872-142-5-1097]Search in Google Scholar
[Mlejnková H. & Sovová K. (2010): Impact of pollution and seasonal changes on microbial community structure in surface water. − Wat. Sci. Tech. 61(11): 2787-2795.10.2166/wst.2010.080]Search in Google Scholar
[Raskin L., St romley J., M., Ri t tmann B. & E. & Stahl , D., A. (1994): Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. − Appl. Environ. Microbiol. 60: 1232-1240.]Search in Google Scholar
[Sekar R., Pernthaler A., Pernthaler J., Warnecke F., Posch T. & Amann R. (2003): An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridisation. − Appl. Environ. Microbiol. 69(5): 2928-2935.10.1128/AEM.69.5.2928-2935.2003]Search in Google Scholar
[Stahl D., A. & Amann., R. (1991): Development and application of nucleic acid probes, pp. 205-248. In E. Stackebrandt & M. Goodfel low (eds): Nucleic acid techniques in bacterial systematics. John Wiley & Sons Ltd., Chichester, England.]Search in Google Scholar
[Tirodimos I., Haidich A.B., Dar ravess i s T. & Arvani t idou M. (2009): River research and applications 10.1002/rra1301.]Search in Google Scholar
[Wagner M., Horn M., Daims H. (2003): Fluorescence in situ hybridisation for identification and characterisation of prokaryotes. − Current Opinion in Microbiology, 6:302-309.10.1016/S1369-5274(03)00054-7]Search in Google Scholar