<abstract xmlns="http://www.w3.org/1999/xhtml"><p>We developed a new set of 25 nuclear (nc), 12 chloroplast (cp) and 7 mitochondrial (mt) SNPs and used it to genotype 371 Mongolian oak (<italic>Quercus mongolica</italic> Fisch. ex Ledeb.) trees from seven locations in a 200 km by 400 km area in the Russian Far East. One of the locations in an area of 15 km by 25 km east of the city Ussuriusk was analyzed more intensively with 188 collected trees. The genetic differentiation at the nuclear SNPs was small to moderate and for the plastid SNPs it was high when considering all trees from the seven locations. The gene pool distances between locations were for 19 out of 21 pairs statistically highly significant. There was no correlation of genetic and spatial distances. Only three different multilocus-haplotypes could be identified and 42 two-loci-combinations of plastid SNPs could be used to identify them. Conclusions for the practical application such as timber tracking and gene conservation are discussed.</p></abstract>

We developed a new set of 25 nuclear (nc), 12 chloroplast (cp) and 7 mitochondrial (mt) SNPs and used it to genotype 371 Mongolian oak (Quercus mongolica Fisch. ex Ledeb.) trees from seven locations in a 200 km by 400 km area in the Russian Far East. One of the locations in an area of 15 km by 25 km east of the city Ussuriusk was analyzed more intensively with 188 collected trees. The genetic differentiation at the nuclear SNPs was small to moderate and for the plastid SNPs it was high when considering all trees from the seven locations. The gene pool distances between locations were for 19 out of 21 pairs statistically highly significant. There was no correlation of genetic and spatial distances. Only three different multilocus-haplotypes could be identified and 42 two-loci-combinations of plastid SNPs could be used to identify them. Conclusions for the practical application such as timber tracking and gene conservation are discussed.

Short note: Development of a new set of SNP markers to measure genetic diversity and genetic differentiation of Mongolian oak (<italic>Quercus mon­golica</italic> Fisch. ex Ledeb.) in the Far East of Russia

Silvae Genetica

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Short note: Development of a new set of SNP markers to measure genetic diversity and genetic differentiation of Mongolian oak ( Fisch. ex Ledeb.) in the Far East of Russia

We developed a new set of 25 nuclear (nc), 12 chloroplast (cp) and 7 mitochondrial (mt) SNPs and used it to genotype 371 Mongolian oak (Quercus mongolica...

Short note: Development of a new set of SNP markers to measure genetic diversity and genetic differentiation of Mongolian oak (Quercus mongolica Fisch. ex Ledeb.) in the Far East of Russia

Published Online: Oct 21, 2019

Page range: 85 - 91

DOI: https://doi.org/10.2478/sg-2019-0016

Keywords
Quercus mongolica, genetic differentiation, genetic diversity, SNPs, nuclear, plastid, mitochondrial

© 2019 Hilke Schröder et al., published by Sciendo

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Short note: Development of a new set of SNP markers to measure genetic diversity and genetic differentiation of Mongolian oak (Quercus mon­golica Fisch. ex Ledeb.) in the Far East of Russia

Published Online: Oct 21, 2019

Page range: 85 - 91

DOI: https://doi.org/10.2478/sg-2019-0016

KeywordsQuercus mongolica, genetic differentiation, genetic diversity, SNPs, nuclear, plastid, mitochondrial

© 2019 Hilke Schröder et al., published by Sciendo

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Short note: Development of a new set of SNP markers to measure genetic diversity and genetic differentiation of Mongolian oak (Quercus mongolica Fisch. ex Ledeb.) in the Far East of Russia

Keywords
Quercus mongolica, genetic differentiation, genetic diversity, SNPs, nuclear, plastid, mitochondrial