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Journals
Journal of Veterinary Research
Volume 66 (2022): Issue 3 (September 2022)
Open Access
Detection of a new emerging strain of rabbit haemorrhagic disease virus 2 (GI.2) in China
Wanting Chen
Wanting Chen
,
Teng Tu
Teng Tu
,
Yan Luo
Yan Luo
,
Zexiao Yang
Zexiao Yang
,
Xueping Yao
Xueping Yao
,
Xulong Wu
Xulong Wu
and
Yin Wang
Yin Wang
| Sep 14, 2022
Journal of Veterinary Research
Volume 66 (2022): Issue 3 (September 2022)
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Published Online:
Sep 14, 2022
Page range:
289 - 295
Received:
Mar 10, 2022
Accepted:
Aug 30, 2022
DOI:
https://doi.org/10.2478/jvetres-2022-0048
Keywords
China
,
rabbit haemorrhagic disease virus 2
,
whole genome sequence
,
genetic variation
© 2022 W. Chen et al. published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.
Fig. 1
Clinical pathological changes after GI.2 infection in rabbits. A – lungs and epicardium; B – tracheas; C – livers; D – facial appearance of an infected rabbit; E – faeces; F – bladders
Fig. 2
Histopathological lesions in spleen, liver, and lung tissue. A and B – liver; C – spleen; D – lung. Scale bar 100μm
Fig. 3
Particles of the rabbit haemorrhagic disease virus (GI.2)
Fig. 4
PCR amplification results of the whole gene from the strain isolated in the present study. M – DNA marker; 1 – sample; 2 – negative control
Fig. 5
Maximum-likelihood phylogenetic trees. A – tree for the whole genome, nucleotide substitution model GTR + G + I; B – tree for the non-structural genes: nucleotides 1–5295, nucleotide substitution model GTR + G + I; C – tree for the structural genes (VP60+VP10): nucleotides 5296–7369, nucleotide substitution model GTR + G + I
Recombination analysis of the SCCN04 isolate
Major parent
Minor parent
Breakpoints (nt)
P value
RDP
GENECONV
BootScan
MaxChi
Chimaera
SiScan
3Seq
MT586027.1
a
MN90145.1
a
2858and 5137
-
-
-
2.046×10
−7
2.481×10
−6
-
4.093×10
−5