Open Access

Comparison of bacterial communities in roots of selected trees with and without summer truffle (Tuber aestivum) ectomycorrhiza


Cite

Ali, N.A., Jackson, R.M. 1988. The effect of plant roots and their secretions on the germination of ectomycorrhizal fungal spores. Transactions of the British Mycological Society, 91 (2), 253–260.Ali N.A. Jackson R.M. 1988 The effect of plant roots and their secretions on the germination of ectomycorrhizal fungal spores Transactions of the British Mycological Society 91 2 253 26010.1016/S0007-1536(88)80212-2Search in Google Scholar

Antony-Babu, S. et al. 2014. Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles. Environmental Microbiology, 16 (9), 2831–2847.Antony-Babu S. et al 2014 Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles Environmental Microbiology 16 9 2831 284710.1111/1462-2920.1229424118660Search in Google Scholar

Badura, L. 2005. Mikroorganizmy glebowe i ich znaczenie w ekosystemach degradowanych przez człowieka. Inżynieria Ekologiczna, 12, 14–15.Badura L. 2005 Mikroorganizmy glebowe i ich znaczenie w ekosystemach degradowanych przez człowieka Inżynieria Ekologiczna 12 1415Search in Google Scholar

Baldrian, P. et al. 2012. Active and total microbial communities in forest soil are largely 463 different and highly stratified during decomposition. The ISME Journal, 6, 248–258.Baldrian P. et al 2012 Active and total microbial communities in forest soil are largely 463 different and highly stratified during decomposition The ISME Journal 6 24825810.1038/ismej.2011.95326051321776033Search in Google Scholar

Bardgett, R.D. 2011. Plant-soil interactions in a changing world. F1000 Biological Reports 3, 16. DOI: 10.3410/B3-16Bardgett R.D. 2011 Plant-soil interactions in a changing world F1000 Biological Reports 3 16 10.3410/B3-16315518721876727Open DOISearch in Google Scholar

Beckers, B., Beeck, M.O., Weyens, N., Boerjan, W., Vangronsveld, J. 2017. Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees. Microbiome, 5, 25.Beckers B. Beeck M.O. Weyens N. Boerjan W. Vangronsveld J. 2017 Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees Microbiome 5 2510.1186/s40168-017-0241-2532421928231859Search in Google Scholar

Błaszczyk, M.K. 2010. Mikrobiologia środowisk. Wydawnictwo PWN, Warszawa.Błaszczyk M.K. 2010 Mikrobiologia środowisk Wydawnictwo PWN WarszawaSearch in Google Scholar

Blom, D. et al. 2011. Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions. Environmental Microbiology, 13, 3047–3058.Blom D. et al 2011 Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions Environmental Microbiology 13 3047305810.1111/j.1462-2920.2011.02582.x21933319Search in Google Scholar

Boersma, F.G.H., Warmink, J.A., Andreote, F.A., Van Elsas, J.D. 2009. Selection of Sphingomonadaceae at the base of Laccaria proxima and Russula exalbicans fruiting bodies. Applied and Environmental Microbiology, 75, 1979–1989.Boersma F.G.H. Warmink J.A. Andreote F.A. Van Elsas J.D. 2009 Selection of Sphingomonadaceae at the base of Laccaria proxima and Russula exalbicans fruiting bodies Applied and Environmental Microbiology 75 1979198910.1128/AEM.02489-08266321319181827Search in Google Scholar

Boersma, F.G.H., Otten, R., Warmink, J.A., Nazir, R., Van Elsas, J.D. 2010. Selection of Variovorax paradoxus-like bacteria in the mycosphere and the role of fungal-released compounds. Soil Biology and Biochemistry, 42 (12), 2137–2145.Boersma F.G.H. Otten R. Warmink J.A. Nazir R. Van Elsas J.D. 2010 Selection of Variovorax paradoxus-like bacteria in the mycosphere and the role of fungal-released compounds Soil Biology and Biochemistry 42 12 2137 214510.1016/j.soilbio.2010.08.009Search in Google Scholar

Citterio, B. et al. 1995. Isolation of bacteria from sporocarps of Tuber magnatum Pico, Tuber borchii Vitt. and Tuber maculatum Vitt. In: Biotechnology of ectomycorrhizae, (eds.: V. Stocchi, P. Bonfante, M. Nuti). Plenum Press, New York, 241–248.Citterio B. et al 1995 Isolation of bacteria from sporocarps of Tuber magnatum Pico, Tuber borchii Vitt. and Tuber maculatum Vitt Biotechnology of ectomycorrhizae, (eds.: V. Stocchi, P. Bonfante, M. Nuti) Plenum Press New York 24124810.1007/978-1-4615-1889-1_21Search in Google Scholar

Clark, D.S. 1971. Studies on the surface plate method of counting bacteria. Canadian Journal of Microbiology, 17 (7), 943–946.Clark D.S. 1971 Studies on the surface plate method of counting bacteria Canadian Journal of Microbiology 17 7 943 94610.1139/m71-1504937646Search in Google Scholar

Deveau, A. et al. 2007. The mycorrhiza assistant Pseudomonas fluorescens BBc6R8 has a specific stimulating effect on the growth, morphology and expression of the genes of the ectomycorrhizal fungus Laccaria bicolor S238N. New Phytologist, 175 (4), 743–755.Deveau A. et al 2007 The mycorrhiza assistant Pseudomonas fluorescens BBc6R8 has a specific stimulating effect on the growth, morphology and expression of the genes of the ectomycorrhizal fungus Laccaria bicolor S238N New Phytologist 175 4 743 75510.1111/j.1469-8137.2007.02148.x17688589Search in Google Scholar

Deveau, A. et al. 2016. Temporal changes of bacterial communities in the Tuber melanosporum ectomycorrhizosphere during ascocarp development. Mycorrhiza, 26, 389–399.Deveau A. et al 2016 Temporal changes of bacterial communities in the Tuber melanosporum ectomycorrhizosphere during ascocarp development Mycorrhiza 26 38939910.1007/s00572-015-0679-726781750Search in Google Scholar

Eisenhauer, N. et al. 2017. The root biomass and secretions combine the diversity of plants with the biomass of soil bacteria and fungi. Scientific Reports, 7 (1), 1–8.Eisenhauer N. et al 2017 The root biomass and secretions combine the diversity of plants with the biomass of soil bacteria and fungi Scientific Reports 7 1 1 8Search in Google Scholar

Foster, R.C. 1988. Microenvironments of soil microorganisms. Biology and Soil Fertility, 6 (3), 189–203.Foster R.C. 1988 Microenvironments of soil microorganisms Biology and Soil Fertility 6 3 189 20310.1007/BF00260816Search in Google Scholar

Frey-Klett, P., Garbaye, J.A., Tarkka, M. 2007. The mycorrhiza helper bacteria revisited. New Phytologist, 176, 22–36.Frey-Klett P. Garbaye J.A. Tarkka M. 2007 The mycorrhiza helper bacteria revisited New Phytologist 176 223610.1111/j.1469-8137.2007.02191.x17803639Search in Google Scholar

Frey-Klett, P., Burlinson, P., Deveau, A., Barret, M., Tarkka, M., Sarniguet, A. 2011. Bacterico-fungal interactions: links between agricultural, clinical, environmental and food microbiologists. Review of Microbiology and Molecular Biology, 75 (4), 583–609.Frey-Klett P. Burlinson P. Deveau A. Barret M. Tarkka M. Sarniguet A. 2011 Bacterico-fungal interactions: links between agricultural, clinical, environmental and food microbiologists Review of Microbiology and Molecular Biology 75 4 583 60910.1128/MMBR.00020-11323273622126995Search in Google Scholar

Galus-Barchan, A., Paśmionka, I. 2014. The occurrence of selected microorganisms in the soil in the area of the Niepolomice Forest with particular emphasis on mould fungi. Polish Journal of Agronomy, 17, 11–17.Galus-Barchan A. Paśmionka I. 2014 The occurrence of selected microorganisms in the soil in the area of the Niepolomice Forest with particular emphasis on mould fungi Polish Journal of Agronomy 17 1117Search in Google Scholar

Gotkowska-Płachta, A., Filipkowska, Z., Korzeniewska, E., Janczukowicz, W. 2008. Microbiological contamination of the atmospheric air in and around the sewage treatment plant with an overhead pond system. Water-Environment-Rural Areas, 8, 83–98.Gotkowska-Płachta A. Filipkowska Z. Korzeniewska E. Janczukowicz W. 2008 Microbiological contamination of the atmospheric air in and around the sewage treatment plant with an overhead pond system Water-Environment-Rural Areas 8 8398Search in Google Scholar

Gryndler, M., Hršelová, H. 2012. Isolation of bacteria from ectomycorrhizae of Tuber aestivum Vittad. Acta Mycologica, 47, 155–160.Gryndler M. Hršelová H. 2012 Isolation of bacteria from ectomycorrhizae of Tuber aestivum Vittad Acta Mycologica 47 15516010.5586/am.2012.018Search in Google Scholar

Gryndler, M. et al. 2013. A quest for indigenous truffle helper prokaryotes. Environmental Microbiology Reports, 5, 346–352.Gryndler M. et al 2013 A quest for indigenous truffle helper prokaryotes Environmental Microbiology Reports 5 34635210.1111/1758-2229.1201423754715Search in Google Scholar

Hilszczańska, D. 2016. Polskie trufle skarb odzyskany. Centrum Informacyjne Lasów Państwowych, Warsaw, Poland.Hilszczańska D. 2016 Polskie trufle skarb odzyskany Centrum Informacyjne Lasów Państwowych Warsaw, PolandSearch in Google Scholar

Hilszczańska, D., Szmidla, H., Sikora, K., Rosa-Gruszecka, A. 2019. Soil properties conducive to the formation of Tuber aestivum Vitt. fruiting bodies. Polish Journal of Environmental Studies, 28, 1713–1718.Hilszczańska D. Szmidla H. Sikora K. Rosa-Gruszecka A. 2019 Soil properties conducive to the formation of Tuber aestivum Vitt fruiting bodies. Polish Journal of Environmental Studies 28 1713171810.15244/pjoes/89588Search in Google Scholar

Kubiak, K., Wrzosek, M., Przemieniecki, S., Damszel, M., Sierota, Z. 2018. Bacteria inhabiting wood of roots and stumps in forest and arable soils. In: Endophytes of forest trees. Springer, Cham, 319–342.Kubiak K. Wrzosek M. Przemieniecki S. Damszel M. Sierota Z. 2018 Bacteria inhabiting wood of roots and stumps in forest and arable soils Endophytes of forest trees Springer Cham 31934210.1007/978-3-319-89833-9_14Search in Google Scholar

Kurek, E., Kobus, J. 1990. Beneficial and harmful influence of rhizosphere microflora on the growth and development of plants. Advances in Microbiology, 29, 103–123.Kurek E. Kobus J. 1990 Beneficial and harmful influence of rhizosphere microflora on the growth and development of plants Advances in Microbiology 29 103123Search in Google Scholar

Kim, Bo-Ra et al. 2017. Deciphering diversity indices for a better understanding of microbial communities. Journal of Microbiology and Biotechnology, 27, 2089–2093.Kim Bo-Ra et al 2017 Deciphering diversity indices for a better understanding of microbial communities Journal of Microbiology and Biotechnology 27 2089209310.4014/jmb.1709.0902729032640Search in Google Scholar

Kubiak, K., Damszel, M., Sikora, K., Przemieniecki, S., Małecka, M., Sierota, Z. 2017. Colonization of fungi and bacteria in stumps and roots of scots pine after thinning and treatment with Rotstop. Journal of Phytopathology, 165, 143–156.Kubiak K. Damszel M. Sikora K. Przemieniecki S. Małecka M. Sierota Z. 2017 Colonization of fungi and bacteria in stumps and roots of scots pine after thinning and treatment with Rotstop Journal of Phytopathology 165 14315610.1111/jph.12534Search in Google Scholar

Lane, D.J. 1991. 16S/23S rRNA sequencing. In: Nucleic acid techniques in bacterial systematics (eds.: E. Stackebrandt, M. Goodfellow). John Wiley and Sons, 115–175.Lane D.J. 1991 16S/23S rRNA sequencing Nucleic acid techniques in bacterial systematics (eds.: E Stackebrandt M. Goodfellow). John Wiley and Sons 115175Search in Google Scholar

López-Mondéjar, R., Voříšková, J., Větrovský, T., Baldrian, P. 2015. The bacterial community of the temperate zone deciduous forests is vertically stratified and subject to seasonal dynamics. Soil Biology and Biochemistry, 87, 43–50.López-Mondéjar R. Voříšková J. Větrovský T. Baldrian P. 2015 The bacterial community of the temperate zone deciduous forests is vertically stratified and subject to seasonal dynamics Soil Biology and Biochemistry 87 435010.1016/j.soilbio.2015.04.008Search in Google Scholar

Lau, J.A., Lennon, J.T. 2011. Evolutionary ecology of plant–microbe interactions: soil microbial structure alters selection on plant traits. New Phytologist, 192 (1), 215–224.Lau J.A. Lennon J.T. 2011 Evolutionary ecology of plant–microbe interactions: soil microbial structure alters selection on plant traits New Phytologist 192 1 215 22410.1111/j.1469-8137.2011.03790.x21658184Search in Google Scholar

Lozupone, C., Knight, R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology, 71.12, 8228–8235.Lozupone C. Knight R. 2005 UniFrac: a new phylogenetic method for comparing microbial communities Applied and Environmental Microbiology 7112 8228823510.1128/AEM.71.12.8228-8235.2005131737616332807Search in Google Scholar

Medinger, R. et al. 2010. Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Molecular Ecology, 19, 32–40.Medinger R. et al 2010 Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms Molecular Ecology 19 324010.1111/j.1365-294X.2009.04478.x295370720331768Search in Google Scholar

Mello, A. et al. 2013. Truffle brûlés have an impact on the diversity of soil bacterial communities. PLoS One, 8 (4), 61945.Mello A. et al 2013 Truffle brûlés have an impact on the diversity of soil bacterial communities PLoS One 8 4 6194510.1371/journal.pone.0061945364003123667413Search in Google Scholar

Ncbi. Available at http://www.ncbi.nlm.nih.gov/ (access on 15 November 2017). Ncbi. Available at http://www.ncbi.nlm.nih.gov/ (access on 15 November 2017Search in Google Scholar

Pociejowska, M., Natywa, M., Gałązka, A. 2014. Stymulacja wzrostu roślin przez bakterie PGPR. Kosmos, 4, 603–610.Pociejowska M. Natywa M. Gałązka A. 2014 Stymulacja wzrostu roślin przez bakterie PGPR Kosmos 4 603610Search in Google Scholar

Poole, E.J., Bending, G.D., Whipps, J.M., Read, D.J. 2001. Bacteria associated with Pinus sylvestrisLactarius rufus ectomycorrhizas and their effects on mycorrhiza formation in vitro. New Phytologist, 151 (3), 743–751.Poole E.J. Bending G.D. Whipps J.M. Read D.J. 2001 Bacteria associated with Pinus sylvestris– Lactarius rufus ectomycorrhizas and their effects on mycorrhiza formation in vitro New Phytologist 151 3 743 75110.1046/j.0028-646x.2001.00219.x33853249Search in Google Scholar

Proença, D.N. et al. 2017. Microbial endophytic, wood colonizing pine bacteria as a result of pine wilting disease. Scientific Reports, 7 (1), 1–9.Proença D.N. et al 2017 Microbial endophytic, wood colonizing pine bacteria as a result of pine wilting disease Scientific Reports 7 1 1 9Search in Google Scholar

Przemieniecki, S.W. et al. 2021. Bacterial microbiome in Armillaria ostoyae rhizomorphs inhabiting the root zone during progressively dying Scots pine. Applied Soil Ecology, 164, 103929. 10.1016/j.apsoil.2021.103929Przemieniecki S.W. et al 2021 Bacterial microbiome in Armillaria ostoyae rhizomorphs inhabiting the root zone during progressively dying Scots pine Applied Soil Ecology 164 103929 10.1016/j.apsoil.2021.103929Open DOISearch in Google Scholar

Rangel-Castro, I.J., Danell, E., Taylor, A.F. 2002. Use of different nitrogen sources by the edible ectomycorrhizal mushroom Cantharellus cibarius Mycorrhiza, 12 (3), 131–137.Rangel-Castro I.J. Danell E. Taylor A.F. 2002 Use of different nitrogen sources by the edible ectomycorrhizal mushroom Cantharellus cibarius Mycorrhiza 12 3 131 13710.1007/s00572-002-0160-212072983Search in Google Scholar

Riedlinger, J., Schrey, S.D., Tarkka, M.T., Hampp, R., Kapur, M., Fiedler, H.P. 2006. Auxofuran, a novel metabolite that stimulates the growth of fly agaric, is produced by the mycorrhiza helper bacterium Streptomyces strain AcH 505. Applied and Environmental Microbiology, 72 (5), 3550–3557.Riedlinger J. Schrey S.D. Tarkka M.T. Hampp R. Kapur M. Fiedler H.P. 2006 Auxofuran, a novel metabolite that stimulates the growth of fly agaric, is produced by the mycorrhiza helper bacterium Streptomyces strain AcH 505 Applied and Environmental Microbiology 72 5 3550 355710.1128/AEM.72.5.3550-3557.2006147232116672502Search in Google Scholar

Rosa-Gruszecka, A., Hilszczańska, D., Szmidla, H. 2014. Warunki środowiskowe sprzyjające występo-waniu trufli (Tuber spp.) na historycznych stanowiskach w Polsce. Leśne Prace Badawcze, 75, 5–11.Rosa-Gruszecka A. Hilszczańska D. Szmidla H. 2014 Warunki środowiskowe sprzyjające występo-waniu trufli (Tuber spp.) na historycznych stanowiskach w Polsce Leśne Prace Badawcze 75 511Search in Google Scholar

Siebyła, M., Hilszczańska, D. 2020. Diversity of soil bacteria complexes associated with summer truffle (Tuber aestivum Folia Forestalia Polonica Series A – Forestry, 62 (2), 114–127. DOI: 10.2478/ffp-2020-0012Siebyła M. Hilszczańska D. 2020 Diversity of soil bacteria complexes associated with summer truffle (Tuber aestivum) Folia Forestalia Polonica Series A – Forestry 62 2 114 127 10.2478/ffp-2020-0012Open DOISearch in Google Scholar

Siebyła, M., Hilszczańska, D. Genomic analysis (Next Generation Sequencing) of bacteria in the soils of sites of naturally-occurring summer truffle (Tuber aestivum Vittad.). unpubl.Siebyła M. Hilszczańska D. Genomic analysis (Next Generation Sequencing) of bacteria in the soils of sites of naturally-occurring summer truffle (Tuber aestivum Vittad.). unpublSearch in Google Scholar

Splivallo, R., Deveau, A., Valdez, N., Kirchhoff, N., Frey-Klett, P., Karlovsky, P. 2015. Bacteria associated with truffle-fruiting bodies contribute to truffle aroma. Environmental Microbiology, 17 (8), 2647–2660.Splivallo R. Deveau A. Valdez N. Kirchhoff N. Frey-Klett P. Karlovsky P. 2015 Bacteria associated with truffle-fruiting bodies contribute to truffle aroma Environmental Microbiology 17 8 2647 266010.1111/1462-2920.1252124903279Search in Google Scholar

Sosnowski, J., Król, J. 2018. Effect of synthetic plant hormones on the concentration of Ca, Mg and K in Medicago x varia T biomass. Martyn and Trifolium pratense L. Annual Set the Environment Protection Environmental Protection, 20, 1465–1479.Sosnowski J. Król J. 2018 Effect of synthetic plant hormones on the concentration of Ca, Mg and K in Medicago x varia T biomass Martyn and Trifolium pratense L. Annual Set the Environment Protection Environmental Protection 20 14651479Search in Google Scholar

Staley, C. et al. 2013. Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River. Journal of Applied Microbiology, 115 (5), 1147–1158.Staley C. et al 2013 Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River Journal of Applied Microbiology 115 5 1147 115810.1111/jam.1232323924231Search in Google Scholar

Steinauer, K., Chatzinotas, A., Eisenhauer, N. 2016. Cocktails with root exudation: a link between plant diversity and soil microorganisms? Ecology and Evolution, 6 (20), 7387–7396.Steinauer K. Chatzinotas A. Eisenhauer N. 2016 Cocktails with root exudation: a link between plant diversity and soil microorganisms? Ecology and Evolution 6 20 7387 739610.1002/ece3.2454551327628725406Search in Google Scholar

Sun, L., Qiu, F., Zhang, X., Daim, X., Dong, X., Song, W. 2008. Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Microbial Ecology, 55 (3), 415–424.Sun L. Qiu F. Zhang X. Daim X. Dong X. Song W. 2008 Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis Microbial Ecology 55 3 415 42410.1007/s00248-007-9287-117690836Search in Google Scholar

Tarkka, M.T., Frey-Klett, P. 2008. Mycorrhiza helper bacteria. In: Mycorrhiza (ed.: A. Varma). Springer, Berlin, Heidelberg. 10.1007/978-3-540-78826-3_6Tarkka M.T. Frey-Klett P. 2008 Mycorrhiza helper bacteria. In: Mycorrhiza (ed.: A. Varma) Springer Berlin, Heidelberg 10.1007/978-3-540-78826-3_6Open DOISearch in Google Scholar

Tedersoo, L. et al. 2010. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist, 188 (1), 291–301.Tedersoo L. et al 2010 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases New Phytologist 188 1 291 30110.1111/j.1469-8137.2010.03373.x20636324Search in Google Scholar

Team, R.C. 2013. A language and environment for statistical computing.Team R.C. 2013 A language and environment for statistical computingSearch in Google Scholar

Tsukamoto, T., Murata, H., Shirata, A. 2002. Identification of non-pseudomonad bacteria from fruit bodies of wild agaricales fungi that detoxify tolaasin produced by Pseudomonas tolaasii Bioscience, Biotechnology, and Biochemistry, 66 (10), 2201–2208.Tsukamoto T. Murata H. Shirata A. 2002 Identification of non-pseudomonad bacteria from fruit bodies of wild agaricales fungi that detoxify tolaasin produced by Pseudomonas tolaasii Bioscience, Biotechnology, and Biochemistry 66 10 2201 220810.1271/bbb.66.220112450133Search in Google Scholar

Vahdatzadeh, M., Deveau, A., Splivallo, R. 2015. The role of the microbiome of truffles in aroma formation: a meta-analysis approach. Applied and Environmental Microbiology, 81, 6946–6952.Vahdatzadeh M. Deveau A. Splivallo R. 2015 The role of the microbiome of truffles in aroma formation: a meta-analysis approach Applied and Environmental Microbiology 81 6946695210.1128/AEM.01098-15457944826187969Search in Google Scholar

Zacchi, L., Vaughan-Martini, A., Angelini, P. 2003. Yeast distribution in a truffle field ecosystem. Annals of Microbiology, 53, 275–282.Zacchi L. Vaughan-Martini A. Angelini P. 2003 Yeast distribution in a truffle field ecosystem Annals of Microbiology 53 275282Search in Google Scholar

eISSN:
2199-5907
Language:
English
Publication timeframe:
4 times per year
Journal Subjects:
Life Sciences, Plant Science, Medicine, Veterinary Medicine