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De novo KMT2D heterozygous frameshift deletion in a newborn with a congenital heart anomaly


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Figure 1

The detected de novo heterozygous frameshift deletion in the KMT2D gene. (A) Sanger sequencing confirmed a heterozygous frameshift deletion at NM_003482.3: c. 11093delG in the KMT2D gene in the patient and excluded this deletion in the patient’s parents (data not shown). (B) Presentation of the de novo heterozygous frameshift deletion in the KMT2D gene at position chr12: g.49427394GC>G (hg19). The deletion in our patient after running the NGS analysis is shown as black lines in empty space using Integrative Genomics Viewer (IGV).
The detected de novo heterozygous frameshift deletion in the KMT2D gene. (A) Sanger sequencing confirmed a heterozygous frameshift deletion at NM_003482.3: c. 11093delG in the KMT2D gene in the patient and excluded this deletion in the patient’s parents (data not shown). (B) Presentation of the de novo heterozygous frameshift deletion in the KMT2D gene at position chr12: g.49427394GC>G (hg19). The deletion in our patient after running the NGS analysis is shown as black lines in empty space using Integrative Genomics Viewer (IGV).

Figure 2

Mild facial features of KS were observed in our patient during his follow-up at age 2.5 years. A written informed consent was obtained from the patient’s parents for publication of proband’s pictures.
Mild facial features of KS were observed in our patient during his follow-up at age 2.5 years. A written informed consent was obtained from the patient’s parents for publication of proband’s pictures.

Phenotypic scoring system for KS proposed by the international consensus diagnostic criteria. This table was adapted from the studies of Makrythanasis et al. [13] and Adam et al. [4].

Clinical FindingsPossible ScoreScored FeaturesFeature Present/Number of Points
Facial features0-5 pointsaabnormal dentition[–]
arched eyebrows, sparse lateral one-third[+]
blue sclerae[–]
broad nalal root[+]
averted lower eyelids[–]
flat nasal tip[+]
high or cleft palate[+]
large dysplastic ears[+]
lip nodules[–]
long palpebral fissures[+]
micrognathia[–]
oligodontia[–]
ptosis[–]
strabismus[–]
thin vermillion of the upper lip and full lower lip[+]
a 0-3 features = 1 point; 4-6 features = 2 points; 7-9 features = 3 points; 10-12 features = 4 points; 13-15 features = 5 points3 points
Limb/extremity featuresup to 1 pointbbrachydactyly or clinodactyly[+]
hip dislocation[–]
lax joints[–]
persistent fetal pads[–]
b 0-1 feature = 0 point; 2-4 features = 1 point0 points
Heart1 point1
Kidney1 point1
Microcephaly1 point1
Short stature1 point1

Noticed during development.

Summary1-10 points3+0+4=7

Comparison of features observed in our proband with the most commonly observed features in individuals with heterozygous pathogenic mutation in the KMT2D gene.

Phenotypic Features in Patients with KMT2D MutationsFeatures Present in Our Proband
Intellectual disability (IQ <70)not tested
Fetal fingertip padsno
Congenital heart defectyes
Long palpebral fissuresyes
Large, prominent or cupped earsyes
Hypotoniayes
Eversion of the lower eyelidno
Arched or broad eyhrowsyes
Cleft palateyes
Brachydactylyyes
Short columella with depressed nasal tipyes
Short statureyes
Microcephalyyes
Oligodontia and/or abnormal incisorsno
Feeding difficultiesyes
Developmental delayyes
Latent eyebrows, sparse or notchedyes
Hearing lossyes
Non traumatic joint dislocationno
Hypogammaglobulin or low serum IgAyes
Hyperinsulinemic hypoglycemia in infancyno
Lip pitsno
Malpositioned kidneysno
Idiopathic thrombocytopenia purpura (ITP)no
Hypospadias in malesno
eISSN:
1311-0160
Language:
English
Publication timeframe:
2 times per year
Journal Subjects:
Medicine, Basic Medical Science, other