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Figure 1

The figure shows the distribution map of CNVs on different chromosomes. The x-axis represents the number of chromosome and the y-axis represents the count of different CNVs in the 324 samples. Different color depth means different CNVs on the same chromosome. Copy number variations of Xq22.31, 22qll.21 and 15qll.2 show high frequencies in this study.
The figure shows the distribution map of CNVs on different chromosomes. The x-axis represents the number of chromosome and the y-axis represents the count of different CNVs in the 324 samples. Different color depth means different CNVs on the same chromosome. Copy number variations of Xq22.31, 22qll.21 and 15qll.2 show high frequencies in this study.

Copy number variations detected and their descriptions. (The bolded CNVs indicate high frequencies.)

CNVs TypeCodeChromosome LocationStart-End PositionSize (Mb)Number of RefSeq GenesIncluded in DGV, ISCA, DECDisease-Related Gene in OMIMPhenotype
DeletionR17017q31.31120420001-1205-800000.161noTSPAN12primary 4 years; infertility no symptoms
R17028p23.3-p23.2160001-38800003.7210yesCLN8; ARHGEF10primary 4 years; infertility no symptoms
R170316pl3.2-pl3.1114720001-153000001.0420yesND1; MYH11; ABCC6primary 5 years; infertility no symptoms
R1704Xq21.3393900001-951400001.240yesprimary infertility 5 years; no symptoms
R1705Xp22.316420001-81600001.686yesSTSprimary 6 years; infertility no symptoms
DuplicationR17073q27.3-q28187560001-1888800001.322noLPPprimary 5 years; infertility no symptoms
R17084q34.3178120001-1798400001.724noAGAsecondary 1 year; no infertility symptoms
R17095q21.3-q22.1108900001-1100200001.123noprimary infertility 4 years; no symptoms
R17106ql6.3102480001-1038600001.361yes(most of) GRIK2secondary infertility 5 years; no symptoms
R17117q21.1388920001-904400001.207yesCLDN12; GTPBP10primary 1 year; no infertility symptoms
R17129q22.32-q22.3398480001-995600001.088noHSD17B3secondary 1 year; no infertility symptoms
R171311q24.2124580001-1269800002.4036noROBO3; FOXRED1; HEPACAM; HYLS1; TIRAP; KIRREL3primary infertility 3 years; no symptoms
R171412pl3.33640001-17200001.087noWNK1primary 3 years; infertility no symptoms
R171515qll.220840001-227800001.745yesNBEAP1primary 1 year; no infertility symptoms
R171615qll.220840001-227800001.745yesNBEAP1primary infertility 5 years; no symptoms
R171716pl3.11-pl2.315580001-186200002.1215yesNDE1; MYH11; ABCC6; XYLT1secondary infertility 1 year; no symptoms
R171817pl214610001-154400001.286yesPMP22secondary 9 years; no infertility symptoms
R171918pll.2113880001-140400000.161yesMC2Rsecondary 1 year; no infertility symptoms
R172018pll.2118620001-218200002.2055yesRTN4R; SERPIND1; PIBB; SCARF2; COMPT; PRODHsecondary infertility 5 years; no symptoms
R172122qll.2118960001-2110000001.6837yesRTN4R; TBX1; GP1BB; SCARF2; COMTprimary infertility 1 year; no symptoms
R172222qll.2118920001-214200002.0447yesRTN4R; TBX1; SERPIND1; GP1BB; SCARF2;COMT; PRODH; SNAP29primary infertility 1 year; no symptoms
R1723Xql2-ql3.167060001-680600001.004noOPHN1primary infertility 5 years; no symptoms
R1724Xql3.374180001-753800001.204noABCB7; ZDHHC15secondary infertility 1 year; one spontaneous abortion
R1725Xp21.133040001-347200001.683yesDMDprimary infertility 1 year; no symptoms
R1726Xq21.1-q21.283580001-847800001.205noPOF1Bsecondary infertility 1 one year; spontaneous two miscarriages; abortion
R1727Xp22.316420001-81600001.686yesSTSsecondary infertility 8 years; no symptoms
R1728Xp22.316420001-81600001.766yesSTSsecondary infertility 4 years; no symptoms
R1729Xp22.216420001-81600001.725yesSTSsecondary infertility 3 years; no symptoms
R1730Xp22.316420001-81600001.686yesSTSsecondary infertility 1 one year; spontaneous one miscarriage; abortion
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