Cite

Abad, P., Gouzy, J., Aury, J.M., Castagnone-Sereno, P., Danchin, E.G., Deleury, E., Perfus-Barbeoch, L., Anthouard, V., Artiguenave, F., Blok, V.C., Caillaud, M.-C., Coutinho, P.M., Dasilva, C., De Luca, F., Deau, F., Esquibet, M., Flutre, T., Goldstone, J.V., Hamamouch, N., Hewezi, T., Jaillon, O., Jubin, C., Leonetti, P., Magliano, M., Maier, T.R., Markov, G. V., McVeigh, P., Pesole, G., Poulain, J., Robinson-Rechavi, M., Sallet, E., Ségurens, B., Steinbach, D., Tytgat, T., Ugarte, E., van Ghelder, C., Veronico, P., Baum, T.J., Blaxter, M., Bleve-Zacheo, T., Davis, E.L., Ewbank, J. J., Favery, B., Grenier, E., Henrissat, B., Jones, J.T., Laudet, V., G Maule, A., Quesneville, H., Rosso, M.-N., Schiex, T., Smant, G., Weissenbach, J. and Wincker, P.. 2008. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology26: 909–915. Abad P. Gouzy J. Aury J.M. Castagnone-Sereno P. Danchin E.G. Deleury E. Perfus-Barbeoch L. Anthouard V. Artiguenave F. Blok V.C. Caillaud M.-C. Coutinho P.M. Dasilva C. De Luca F. Deau F. Esquibet M. Flutre T. Goldstone J.V. Hamamouch N. Hewezi T. Jaillon O. Jubin C. Leonetti P. Magliano M. Maier T.R. Markov G. V. McVeigh P. Pesole G. Poulain J. Robinson-Rechavi M. Sallet E. Ségurens B. Steinbach D. Tytgat T. Ugarte E. van Ghelder C. Veronico P. Baum T.J. Blaxter M. Bleve-Zacheo T. Davis E.L. Ewbank J. J. Favery B. Grenier E. Henrissat B. Jones J.T. Laudet V. G Maule A. Quesneville H. Rosso M.-N. Schiex T. Smant G. Weissenbach J. and Wincker P. . 2008 . Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita . Nature Biotechnology 26 : 909 915 . 10.1038/nbt.148218660804 Search in Google Scholar

Abawi, G.S. and Moktan, K.. 2010. Bloat nematode problem on garlic: symptoms, distribution, and management guidelines. Department of Plant Pathology and Plant-microbe Biology, Geneva: Cornell University. Abawi G.S. and Moktan K. . 2010 . Bloat nematode problem on garlic: symptoms, distribution, and management guidelines . Department of Plant Pathology and Plant-microbe Biology, Geneva: Cornell University . Search in Google Scholar

Bosi, E., Donati, B., Galardini, M., Brunetti, S., Sagot, M.F., Lió, P., Crescenzi, P., Fani, R. and Fondi, M.. 2015. MeDuSa: a multi-draft based scaffolder. Bioinformatics31: 2443–2451. Bosi E. Donati B. Galardini M. Brunetti S. Sagot M.F. Lió P. Crescenzi P. Fani R. and Fondi M. . 2015 . MeDuSa: a multi-draft based scaffolder . Bioinformatics 31 : 2443 2451 . 10.1093/bioinformatics/btv17125810435 Search in Google Scholar

Chakraborty, M., Baldwin-Brown, J.G., Long, A. D. and Emerson, J.J.. 2016. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage. Nucleic Acids Research44: 1–12. Chakraborty M. Baldwin-Brown J.G. Long A. D. and Emerson J.J. . 2016 . Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage . Nucleic Acids Research 44 : 1 12 . 10.1093/nar/gkw654510056327458204 Search in Google Scholar

Chen, N.. 2004. Using RepeatMasker to identify repetitive elements in genomic sequences. Current Protocols in Bioinformatics5: 4–10. Chen N. . 2004 . Using RepeatMasker to identify repetitive elements in genomic sequences . Current Protocols in Bioinformatics 5 : 4 10 . 10.1002/0471250953.bi0410s0518428725 Search in Google Scholar

Cotton, J.A., et al.2014. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology15: 1–17. Cotton J.A. 2014 . The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode . Genome Biology 15 : 1 17 . 10.1186/gb-2014-15-3-r43405485724580726 Search in Google Scholar

EPPO. 2004. Data Sheets on Quarantine Pests: Ditylenchus dipsaci. E. a. M. P. P. Organization and I.S. Compendium, 90/399003. EPPO . 2004 . Data Sheets on Quarantine Pests: Ditylenchus dipsaci. E. a. M. P. P. Organization and I.S. Compendium, 90/399003 . Search in Google Scholar

Eves-van den Akker, S., et al. 2016. The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology17: 1–23. Eves-van den Akker S. et al . 2016 . The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence . Genome Biology 17 : 1 23 . Search in Google Scholar

Hoff, K.J., Lange, S., Lomsadze, A., Borodovsky, M. and Stanke, M.. 2015. BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS. Bioinformatics32: 767–769. Hoff K.J. Lange S. Lomsadze A. Borodovsky M. and Stanke M. . 2015 . BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS . Bioinformatics 32 : 767 769 . 10.1093/bioinformatics/btv661607816726559507 Search in Google Scholar

Koren, S., Walenz, B.P., Berlin, K., Miller, J.R., Bergman, N. H. and Phillippy, A.M.. 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Research27: 722–736. Koren S. Walenz B.P. Berlin K. Miller J.R. Bergman N. H. and Phillippy A.M. . 2017 . Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation . Genome Research 27 : 722 736 . 10.1101/gr.215087.116541176728298431 Search in Google Scholar

Laetsch, D.R. and Blaxter, M.L.. 2017. BlobTools: Interrogation of genome assemblies. F1000Research,6:1287. Laetsch D.R. and Blaxter M.L. . 2017 . BlobTools: Interrogation of genome assemblies . F1000Research,6:1287 . Search in Google Scholar

Poirier, S., Dauphinais, N., Van der Heyden, H., Véronneau, P. Y., Bélair, G., Gravel, V. and Mimee, B.. 2019. Host range and genetic characterization of Ditylenchus dipsaci populations from eastern Canada. Plant Disease, 103: 456–460. Poirier S. Dauphinais N. Van der Heyden H. Véronneau P. Y. Bélair G. Gravel V. and Mimee B. . 2019 . Host range and genetic characterization of Ditylenchus dipsaci populations from eastern Canada . Plant Disease , 103 : 456 460 . 10.1094/PDIS-07-18-1201-RE30620689 Search in Google Scholar

Qiao, Y., Zaidi, M., Badiss, A., Hughes, B., Celetti, M. and Yu, Q.. 2013. Intra-racial genetic variation of Ditylenchus dipsaci isolated from garlic in Ontario as revealed by random amplified polymorphic DNA analysis. Canadian Journal of Plant Pathology35: 346–353. Qiao Y. Zaidi M. Badiss A. Hughes B. Celetti M. and Yu Q. . 2013 . Intra-racial genetic variation of Ditylenchus dipsaci isolated from garlic in Ontario as revealed by random amplified polymorphic DNA analysis . Canadian Journal of Plant Pathology 35 : 346 353 . 10.1080/07060661.2013.804883 Search in Google Scholar

Roach, M.J., Schmidt, S. A. and Borneman, A.R.. 2018. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies. BMC Bioinformatics19: 460. Roach M.J. Schmidt S. A. and Borneman A.R. . 2018 . Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies . BMC Bioinformatics 19 : 460 . 10.1186/s12859-018-2485-7626703630497373 Search in Google Scholar

Simão, F.A., Waterhouse, R.M., Ioannidis, P., Kriventseva, E.V. and Zdobnov, E.M.. 2015. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics31: 3210–3212. Simão F.A. Waterhouse R.M. Ioannidis P. Kriventseva E.V. and Zdobnov E.M. . 2015 . BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs . Bioinformatics 31 : 3210 3212 . 10.1093/bioinformatics/btv35126059717 Search in Google Scholar

Song, L., Shankar, D.S. and Florea, L.. 2016. Rascaf: improving genome assembly with RNA sequencing data. The Plant Genome9: 1–12. Song L. Shankar D.S. and Florea L. . 2016 . Rascaf: improving genome assembly with RNA sequencing data . The Plant Genome 9 : 1 12 . 10.3835/plantgenome2016.03.002727902792 Search in Google Scholar

Sturhan, D. and Brzeski, M.W.. 1991. Stem and bulb nematodes, Ditylenchus spp. in Manual of agricultural nematology by Marcel Dekker. New York, NY: W.R. Nickle, pp.423–464. Sturhan D. and Brzeski M.W. . 1991 . Stem and bulb nematodes, Ditylenchus spp. in Manual of agricultural nematology by Marcel Dekker . New York, NY: W.R. Nickle, pp.423–464 . Search in Google Scholar

The C. elegans Sequencing Consortium. 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science282: 2012–2018. The C. elegans Sequencing Consortium . 1998 . Genome sequence of the nematode C. elegans: a platform for investigating biology . Science 282 : 2012 2018 . 10.1126/science.282.5396.20129851916 Search in Google Scholar

Zheng, J., Peng, D., Chen, L., Liu, H., Chen, F., Xu, M., Ju, S., Ruan, L. and Sun, M.. 2016. The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. Proceedings of the Royal Society B283: 20160942. Zheng J. Peng D. Chen L. Liu H. Chen F. Xu M. Ju S. Ruan L. and Sun M. . 2016 . The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes . Proceedings of the Royal Society B 283 : 20160942 . 10.1098/rspb.2016.0942497120827466450 Search in Google Scholar

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