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Two-dimensional penalized splines via Gibbs sampling to account for spatial variability in forest genetic trials with small amount of information available

Published Online: 05 Aug 2017
Page range: 25 - 35
Received: 14 Jan 2010
Journal Details
License
Format
Journal
First Published
22 Feb 2016
Publication timeframe
1 time per year
Languages
English
Copyright
© 2020 Sciendo

Spatial environmental heterogeneity are well known characteristics of field forest genetic trials, even in small experiments (<1ha) established under seemingly uniform conditions and intensive site management. In such trials, it is commonly assumed that any simple type of experimental field design based on randomization theory, as a completely randomized design (CRD), should account for any of the minor site variability. However, most published results indicate that in these types of trials harbor a large component of the spatial variation which commonly resides in the error term. Here we applied a two-dimensional smoothed surface in an individual-tree mixed model, using tensor product of linear, quadratic and cubic B-spline bases with different and equal number of knots for rows and columns, to account for the environmental spatial variability in two relatively small (i.e., 576 m2 and 5,705 m2) forest genetic trials, with large multiple-tree contiguous plot configurations. In general, models accounting for site variability with a two-dimensional surface displayed a lower value of the deviance information criterion than the classical RCD. Linear B-spline bases may yield a reasonable description of the environmental variability, when a relatively small amount of information available. The mixed models fitting a smoothed surface resulted in a reduction in the posterior means of the error variance (σ2e), an increase in the posterior means of the additive genetic variance (σ2a) and heritability (h2HT), and an increase of 16.05% and 46.03% (for parents) or 11.86% and 44.68% (for offspring) in the accuracy of breeding values, respectively in the two experiments.

Keywords

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