<abstract xmlns="http://www.w3.org/1999/xhtml"><p> In Poland, about 20% of forest nurseries use irrigation water coming from natural superficial reservoirs, presumed to be the first source of infection caused by harmful pathogens belonging to the Oomycota class, especially Phytophthora genus and Pythium genus. The forest nursery is the only place where forest managers can react before pathogens leave it with asymptomatic plants or soil attached to their roots. The aim of this research was detection and identification phytopathogens in water samples. In order to recognise genus Phytophthora or Pythium in water collected from 33 places in five different forest districts in Poland, two DNA-based approaches of identification were applied: (i) the TaqMan probes, and (ii) sequencing of the ITS6/4 region.</p><p>The genomic DNA was obtained from 17 of 33 investigated water samples. TaqMan probes helped to identify 8 oomycetes present in 17 water samples. Based on ITS rDNA sequencing data, pathogens were identified in 17 cases, and this to the genus level (6 cases) and to the species level (11 cases). In total five Oomycetes species were identified, i.e. 3 Pythium species (Py. citrinum, Py. angustatum, Py. helicoides) and two Phytophthora species (P. lacustris sp. nov. - former taxon Salixsoil, P. gallica sp. nov.).</p></abstract>

In Poland, about 20% of forest nurseries use irrigation water coming from natural superficial reservoirs, presumed to be the first source of infection caused by harmful pathogens belonging to the Oomycota class, especially Phytophthora genus and Pythium genus. The forest nursery is the only place where forest managers can react before pathogens leave it with asymptomatic plants or soil attached to their roots. The aim of this research was detection and identification phytopathogens in water samples. In order to recognise genus Phytophthora or Pythium in water collected from 33 places in five different forest districts in Poland, two DNA-based approaches of identification were applied: (i) the TaqMan probes, and (ii) sequencing of the ITS6/4 region.The genomic DNA was obtained from 17 of 33 investigated water samples. TaqMan probes helped to identify 8 oomycetes present in 17 water samples. Based on ITS rDNA sequencing data, pathogens were identified in 17 cases, and this to the genus level (6 cases) and to the species level (11 cases). In total five Oomycetes species were identified, i.e. 3 Pythium species (Py. citrinum, Py. angustatum, Py. helicoides) and two Phytophthora species (P. lacustris sp. nov. - former taxon Salixsoil, P. gallica sp. nov.).

Molecular detection of oomycetes species in water courses

Bialystok University of Technology, Faculty of Forestry in Hajnówka, Piłsudskiego 8, 17-200 Hajnówka,

Forest Research Institute, Department of Forest Protection, Sękocin Stary, Braci Leśnej 3, 05-090 Raszyn,

University of Neuchâtel, Laboratory of Soil Biology, Rue Emile Argand 11, 2009 Neuchâtel,

Forest Research Institute, Laboratory of Molecular Biology, Sękocin Stary, Braci Leśnej 3, 05-090 Raszyn,

Folia Forestalia Polonica

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

{"article-title":"Molecular detection of oomycetes species in water courses"}

In Poland, about 20% of forest nurseries use irrigation water coming from natural superficial reservoirs, presumed to be the first source of infection caused...

Molecular detection of oomycetes species in water courses

Published Online: Dec 30, 2016

Page range: 246 - 251

Received: Oct 28, 2016

Accepted: Nov 15, 2016

DOI: https://doi.org/10.1515/ffp-2016-0028

Keywords
ITS, forest nurseries, Phytophthora, Pythium, sequencing, TaqMan probes, water courses

© 2017

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Molecular detection of oomycetes species in water courses

Published Online: Dec 30, 2016

Page range: 246 - 251

Received: Oct 28, 2016

Accepted: Nov 15, 2016

DOI: https://doi.org/10.1515/ffp-2016-0028

KeywordsITS, forest nurseries, Phytophthora, Pythium, sequencing, TaqMan probes, water courses

© 2017

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Keywords
ITS, forest nurseries, Phytophthora, Pythium, sequencing, TaqMan probes, water courses