<abstract xmlns="http://www.w3.org/1999/xhtml"><p> There are many methods designed to find differentially expressed genes using RNA-seq data. Their outputs differ a lot, some genes are determined to be differentially expressed by most or all methods, and others - by very few or even by just one method. Here we derive a systematic approach to quantifying the proximity of such methods, allowing us also to discover patterns and to determine whether some of them are significantly different than others.</p></abstract>

There are many methods designed to find differentially expressed genes using RNA-seq data. Their outputs differ a lot, some genes are determined to be differentially expressed by most or all methods, and others - by very few or even by just one method. Here we derive a systematic approach to quantifying the proximity of such methods, allowing us also to discover patterns and to determine whether some of them are significantly different than others.

Comparison of RNA-Seq Differential Expression Methods

Cybernetics and Information Technologies

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

{"article-title":"Comparison of RNA-Seq Differential Expression Methods"}

There are many methods designed to find differentially expressed genes using RNA-seq data. Their outputs differ a lot, some genes are determined to be...

Comparison of RNA-Seq Differential Expression Methods

Article Category: Special Issue With Selected Papers From The Workshop “Two Years Avitohol: Advanced High Performance Computing Applications 2017

Published Online: Jan 16, 2018

Page range: 60 - 67

DOI: https://doi.org/10.1515/cait-2017-0055

Keywords
partially ranked lists, RNA-seq, high-throughput sequencing, NGS, differential expression

© by Dean Palejev

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Comparison of RNA-Seq Differential Expression Methods

Article Category: Special Issue With Selected Papers From The Workshop “Two Years Avitohol: Advanced High Performance Computing Applications 2017

Published Online: Jan 16, 2018

Page range: 60 - 67

DOI: https://doi.org/10.1515/cait-2017-0055

Keywordspartially ranked lists, RNA-seq, high-throughput sequencing, NGS, differential expression

© by Dean Palejev

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Keywords
partially ranked lists, RNA-seq, high-throughput sequencing, NGS, differential expression