Nematodes as soil stress indicators for polycyclic aromatic hydrocarbons: A review

Agarwal, T., Khillare, P.S., Shridhar, V., Ray, S. (2009): Pattern, sources and toxic potential of PAHs in the agricultural soils of Delhi, India. J Hazard Mater, 163(2-3): 1033–1039. DOI:10.1016/j.jhazmat.2008.07.058Agarwal T. Khillare P.S. Shridhar V. Ray S. 2009 Pattern, sources and toxic potential of PAHs in the agricultural soils of Delhi, India J Hazard Mater 163 2-3 1033 1039 10.1016/j.jhazmat.2008.07.05818757133Open DOISearch in Google Scholar

Alexander, M. (2000): Aging, bioavailability, and overestimation of risk from environmental pollutants. Environ Sci Technol, 34(20): 4259–4265. DOI: 10.1021/es001069+Alexander M. 2000 Aging, bioavailability, and overestimation of risk from environmental pollutants Environ Sci Technol 34 20 4259 4265 10.1021/es001069+Open DOISearch in Google Scholar

Bejarano, A., Michel, J. (2016): Oil spills and their impacts on sand beach invertebrate communities: A literature review. Environ Pollut, 218: 709–722. DOI: 10.1016/j.envpol.2016.07.065Bejarano A. Michel J. 2016 Oil spills and their impacts on sand beach invertebrate communities: A literature review Environ Pollut 218 709 722 10.1016/j.envpol.2016.07.06527506649Open DOISearch in Google Scholar

Bengtson, J. (2002): Disturbance and resilience in soil animal communities. Eur J Soil Biol, 38: 119–125. DOI: 10.1016/S1164-5563(02)01133-0Bengtson J. 2002 Disturbance and resilience in soil animal communities Eur J Soil Biol 38 119 125 10.1016/S1164-5563(02)01133-0Open DOISearch in Google Scholar

Blakely, J.K., Neher, D.A., Spongberg, A.L. (2002): Soil invertebrate and microbial communities, and decomposition as indicators of polycyclic aromatic hydrocarbon contamination. Appl Soil Ecol, 21(1): 71–88. DOI: 10.1016/S0929-1393(02)00023-9Blakely J.K. Neher D.A. Spongberg A.L. 2002 Soil invertebrate and microbial communities, and decomposition as indicators of polycyclic aromatic hydrocarbon contamination Appl Soil Ecol 21 1 71 88 10.1016/S0929-1393(02)00023-9Open DOISearch in Google Scholar

Bongers, T., Bongers, M. (1998): Functional diversity of nematodes. Appl Soil Ecol, 10(3): 239–251. DOI: 10.1016/S0929-1393(98)00123-1Bongers T. Bongers M. 1998 Functional diversity of nematodes Appl Soil Ecol 10 3 239 251 10.1016/S0929-1393(98)00123-1Open DOISearch in Google Scholar

Bongers, T., Ferris, H. (1999): Nematode community structure as a bioindicator in environmental monitoring. Trends Ecol Evol, 14(6): 224–228. DOI: 10.1016/S0169-5347(98)01583-3Bongers T. Ferris H. 1999 Nematode community structure as a bioindicator in environmental monitoring Trends Ecol Evol 14 6 224 228 10.1016/S0169-5347(98)01583-3Open DOISearch in Google Scholar

Bongers, T. (1990): The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia, 83(1): 14–19. DOI: 10.1007/BF00324627Bongers T. 1990 The maturity index: an ecological measure of environmental disturbance based on nematode species composition Oecologia 83 1 14 19 10.1007/BF0032462728313236Open DOISearch in Google Scholar

Briar, S.S., Fonte, S.J., Park, I., Six, J., Scow, K., Ferris, H. (2011): The distribution of nematodes and soil microbial communities across soil aggregate fractions and farm management systems. Soil Biol Biochem, 43: 905–914. DOI: 10.1016/j.soil-bio.2010.12.017Briar S.S. Fonte S.J. Park I., Six J Scow K.Ferris H. 2011 The distribution of nematodes and soil microbial communities across soil aggregate fractions and farm management systems Soil Biol Biochem 43 905 914 10.1016/j.soil-bio.2010.12.017Open DOISearch in Google Scholar

Cerniglia, C.E. (1992): Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation, 3, 351–368.Cerniglia C.E. 1992 Biodegradation of polycyclic aromatic hydrocarbons Biodegradation 3 351–36810.1007/978-94-011-1672-5_16Search in Google Scholar

Georgieva, S.S., Mcgrath, S.P., Hooper, D.J., Chambers, B.S. (2002): Nematode communities under stress: the long–term effects of heavy metals in soil treated with sewage sludge. Appl Soil Ecol, 20: 27–42. DOI: 10.1016/S0929-1393(02)00005-7Georgieva S.S. Mcgrath S.P. Hooper D.J. Chambers B.S. 2002 Nematode communities under stress: the long–term effects of heavy metals in soil treated with sewage sludge Appl Soil Ecol 20 27 42 10.1016/S0929-1393(02)00005-7Open DOISearch in Google Scholar

Chen, G., Qin, J., Shi, D., Zhang, Y., Ji, W. (2009): Diversity of soil nematodes in areas polluted with heavy metals and polycyclic aromatic hydrocarbons (PAHs) in Lanzhou, China. Environ Manage, 44(1): 163–172. DOI: 10.1007/s00267-008-9268-2Chen G. Qin J. Shi D. Zhang Y. Ji W. 2009 Diversity of soil nematodes in areas polluted with heavy metals and polycyclic aromatic hydrocarbons (PAHs) in Lanzhou, China Environ Manage 44 1 163 172 10.1007/s00267-008-9268-219205795Open DOISearch in Google Scholar

Cofield, N., Banks, M.K., Schwab, A.P. (2008): Lability of polycyclic aromatic hydrocarbons in the rhizosphere. Chemosphere, 70(9): 1644–1652. DOI: 10.1016/j.chemosphere.2007.07.057Cofield N. Banks M.K. Schwab A.P. 2008 Lability of polycyclic aromatic hydrocarbons in the rhizosphere Chemosphere 70 9 1644 1652 10.1016/j.chemosphere.2007.07.05717900653Open DOISearch in Google Scholar

Donn, S., Neilson, R., Grifiths, B.S., Daniell, T.J. (2012): A novel molecular approach for rapid assessment of soil nematode assemblages – variation, validation and potential applications. Methods Ecol Evol, 3: 12–23. DOI: 10.1111/j.2041-210X.2011.00145.xDonn S. Neilson R. Grifiths B.S. Daniell T.J. 2012 A novel molecular approach for rapid assessment of soil nematode assemblages – variation, validation and potential applications Methods Ecol Evol 3 12 23 10.1111/j.2041-210X.2011.00145.xOpen DOISearch in Google Scholar

Duan, L., Naidu, R., Thavamani, P., Meaklim, J., Megharaj, M. (2015): Managing long-term polycyclic aromatic hydrocarbon contaminated soils: a risk-based approach. Environ Sci Pollut Res, 22(12): 8927–8941. DOI: 10.1007/s11356-013-2270-0Duan L. Naidu R. Thavamani P. Meaklim J. Megharaj M. 2015 Managing long-term polycyclic aromatic hydrocarbon contaminated soils: a risk-based approach Environ Sci Pollut Res 22 12 8927 8941 10.1007/s11356-013-2270-024271723Open DOISearch in Google Scholar

Egres, A.G., Hatje, V., Miranda, D.A., Gallucci, F., Barros, F. (2019): Functional response of tropical estuarine benthic assemblages to perturbation by Polycyclic Aromatic Hydrocarbons. Ecol Ind, 96: 229–240. DOI: 10.1016/j.ecolind.2018.08.062Egres A.G. Hatje V. Miranda D.A. Gallucci F. Barros F. 2019 Functional response of tropical estuarine benthic assemblages to perturbation by Polycyclic Aromatic Hydrocarbons Ecol Ind 96 229 240 10.1016/j.ecolind.2018.08.062Open DOISearch in Google Scholar

Erstfeld, K.M., Snow-Ashbrook, J. (1999): Effects of chronic low-level PAH contamination on soil invertebrate communities. Chemosphere, 39(12): 2117–2139. DOI: 10.1016/s0045-6535(98)00421-4Erstfeld K.M. Snow-Ashbrook J. 1999 Effects of chronic low-level PAH contamination on soil invertebrate communities Chemosphere 39 12 2117 2139 10.1016/s0045-6535(98)00421-410576111Open DOISearch in Google Scholar

Faber, J.H., Creamer, R.E., Mulder, Ch., Römbke, J., Rutgers, M., Sousa, P., Stone, D., Grifiths, B.S. (2013): The Practicalities and Pitfalls of Establishing a Policy^‐Relevant and Cost^‐Effective Soil Biological Monitoring Scheme. Integr Environ Assess Manag, 9(2): 276–284. DOI: 10.1002/ieam.1398Faber J.H. Creamer R.E. Mulder Ch. Römbke J. Rutgers M. Sousa P. Stone D. Grifiths B.S. 2013 The Practicalities and Pitfalls of Establishing a Policy^‐Relevant and Cost^‐Effective Soil Biological Monitoring Scheme Integr Environ Assess Manag 9 2 276 284 10.1002/ieam.139823325463Open DOISearch in Google Scholar

Ferris, H., Bongers, T., De Goede, R.G.M. (2001): A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Appl Soil Ecol, 18(1): 13–29. DOI: 10.1016/S0929-1393(01)00152-4Ferris H. Bongers T. De Goede R.G.M. 2001 A framework for soil food web diagnostics: extension of the nematode faunal analysis concept Appl Soil Ecol 18 1 13 29 10.1016/S0929-1393(01)00152-4Open DOISearch in Google Scholar

Hlava, J., Száková, J., Vadlejch, J., Čadková, Z., Balík, J., Tlust oš, P. (2017): Long-term application of organic matter based fertilisers: Advantages or risks for soil biota? A review. Environ Rev, 25(4): 408–414. DOI:10.1139/er-2017-0011Hlava J. Száková J. Vadlejch J. Čadková Z. Balík J. Tlust oš P. 2017 Long-term application of organic matter based fertilisers: Advantages or risks for soil biota? A review Environ Rev 25 4 408 414 10.1139/er-2017-0011Open DOISearch in Google Scholar

Höss, S., Jänsch, S., Moser, T., Junker, T., Römbke, J. (2009): Assessing the toxicity of contaminated soils using the nematode Caenorhabditis elegans as test organism. Ecotoxicol Environ Saf, 72(7): 1811–1818. DOI:10.1016/j.ecoenv.2009.07.003Höss S. Jänsch S. Moser T. Junker T. Römbke J. 2009 Assessing the toxicity of contaminated soils using the nematode Caenorhabditis elegans as test organism Ecotoxicol Environ Saf 72 7 1811 1818 10.1016/j.ecoenv.2009.07.00319665791Open DOISearch in Google Scholar

Höss, S., Spira, D., Gilbert, D., Melbye, K. (2007): The SeKT Joint Research Project—TV3: effects of spiked natural and artificial sediments on the nematode Caenorhabditis elegans. In: 17th Annual Meeting of Setac Europe; 20–24 May 2007; Porto. Porto, Portugal Jones, O.A.H., Spurgeon, D.J., Svendsen, C., Griffin, J.L. (2008): A metabolomics based approach to assessing the toxicity of the polyaromatic hydrocarbon pyrene to the earthworm Lumbricus rubellus Chemosphere, 71(3): 601–609. DOI: 10.1016/j.chemosphere.2007.08.056Höss S. Spira D. Gilbert D. Melbye K. 2007 The SeKT Joint Research Project—TV3: effects of spiked natural and artificial sediments on the nematode Caenorhabditis elegans In: 17th Annual Meeting of Setac Europe; 20–24 May 2007; Porto. Porto, Portugal Jones, O.A.H., Spurgeon, D.J., Svendsen, C., Griffin, J.L. (2008): A metabolomics based approach to assessing the toxicity of the polyaromatic hydrocarbon pyrene to the earthworm Lumbricus rubellus Chemosphere 71 3 601 609 10.1016/j.chemosphere.2007.08.05617928029Open DOISearch in Google Scholar

Kammenga, J.E., Van Gestel, C.A.M., Bakker, J. (1994): Patterns of sensitivity to cadmium and pentachlorophenol among nematode species from different taxonomic and ecological groups. Arch Environ Contam Toxicol, 27(1): 88–94. DOI: 10.1007/BF00203892Kammenga J.E. Van Gestel C.A.M. Bakker J. 1994 Patterns of sensitivity to cadmium and pentachlorophenol among nematode species from different taxonomic and ecological groups Arch Environ Contam Toxicol 27 1 88 94 10.1007/BF002038928024325Open DOISearch in Google Scholar

Kraft, N.J.B., Adler, P.B., Godoy, O., James, E., Fuller, S., Levine, J.M. (2015): Community assembly, coexistence and the environmental filtering metaphor. Funct Ecol, 29(5): 592–599. DOI: 10.1111/1365-2435.12345Kraft N.J.B. Adler P.B. Godoy O. James E. Fuller S. Levine J.M. 2015 Community assembly, coexistence and the environmental filtering metaphor Funct Ecol 29 5 592 599 10.1111/1365-2435.12345Open DOISearch in Google Scholar

Kuppusamy, S., Thavamani, P., Venkateswarlu, K., Lee, B.Y., Naidu, R., Megharaj, M. (2017): Remediation approaches for polycyclic aromatic hydrocarbons (PAHs) contaminated soils: Technological constraints, emerging trends and future directions. Chemosphere, 168: 944–968. DOI:10.1016/j.chemosphere.2016.10.115Kuppusamy S. Thavamani P. Venkateswarlu K. Lee B.Y. Naidu R. Megharaj M. 2017 Remediation approaches for polycyclic aromatic hydrocarbons (PAHs) contaminated soils: Technological constraints, emerging trends and future directions Chemosphere 168 944 968 10.1016/j.chemosphere.2016.10.11527823779Open DOISearch in Google Scholar

Langenbach, T. (2013): Persistence and bioaccumulation of persistent organic pollutants (POPs). In Patil, Y., Rao, P. (Eds) Applied Bioremediation. Intech, London. DOI: 10.5772/56418Langenbach T. 2013 Persistence and bioaccumulation of persistent organic pollutants (POPs) Patil Y. Rao P. Applied Bioremediation Intech London 10.5772/56418Open DOISearch in Google Scholar

Lerda, D. (2011): Polycyclic Aromatic Hydrocarbons (PAHs) Fact-sheet (4th edition). European Commission, Joint Research Centre, and Institute for Reference Materials and Measurements, p 34Lerda D. 2011 Polycyclic Aromatic Hydrocarbons (PAHs) Fact-sheet (4th edition). European Commission, Joint Research Centre, and Institute for Reference Materials and Measurements 34Search in Google Scholar

Li, F., Neher, D.A., Darby, B.J., Weicht, T.R. (2005): Observed differences in life history characteristics of nematodes Aphelenchus and Acrobeloides upon exposure to copper and benzo(a)pyrene. Ecotoxicology, 14(4): 419–429. DOI: 10.1007/s10646-004-1347-4Lott, M.J., Hose, G.C., Power, M.L. (2014): Towards the molecular characterisation of parasitic nematode assemblages: An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis. Experiment Parasitol, 144: 76–83. DOI: 10.1016/j.exp-para.2014.06.011Li F. Neher D.A. Darby B.J. Weicht T.R. 2005 Observed differences in life history characteristics of nematodes Aphelenchus and Acrobeloides upon exposure to copper and benzo(a)pyrene Ecotoxicology 14 4 419 429 10.1007/s10646-004-1347-4Lott M.J., Hose, G.C., Power, M.L. (2014): Towards the molecular characterisation of parasitic nematode assemblages: An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis. Experiment Parasitol, 144 76-83 10.1016/j.exp-para.2014.06.011Open DOISearch in Google Scholar

Menzel, R., Bogaert, T., Achazi, R. (2001): A systematic gene expression screen of Caenorhabditis elegans cytochrome P450 genes reveals CYP35 as strongly xenobiotic inducible. Arch Bio-chem Biophys, 395(2): 158–168. DOI: 10.1006/abbi.2001.2568Menzel R. Bogaert T. Achazi R. 2001 A systematic gene expression screen of Caenorhabditis elegans cytochrome P450 genes reveals CYP35 as strongly xenobiotic inducible Arch Bio-chem Biophys 395 2 158 168 10.1006/abbi.2001.256811697852Open DOISearch in Google Scholar

Menzel, R., Rodel, M., Kulas, J., Steinberg, C.E. (2005): CYP35: xenobiotically induced gene expression in the nematode Caenorhabditis elegans Arch Biochem Biophys, 438(1): 93–102. DOI: 10.1016/j.abb.2005.03.020Menzel R. Rodel M. Kulas J. Steinberg C.E. 2005 CYP35: xenobiotically induced gene expression in the nematode Caenorhabditis elegans Arch Biochem Biophys 438 1 93 102 10.1016/j.abb.2005.03.02015910738Open DOISearch in Google Scholar

Monteiro, L., Traunspuger, W., Roeleveld, K., Lynen, F., Moens, T. (2018): Direct toxicity of the water-soluble fractions of a crude and a diesel-motor oil on the survival of free-living nematodes. Ecol Indic, 93: 13–23. DOI: 10.1016/j.ecolind.2018.04.066Monteiro L. Traunspuger W. Roeleveld K. Lynen F. Moens T. 2018 Direct toxicity of the water-soluble fractions of a crude and a diesel-motor oil on the survival of free-living nematodes Ecol Indic 93 13 23 10.1016/j.ecolind.2018.04.066Open DOISearch in Google Scholar

Moreno, M., Albertelli, A., Fabiano, M. (2009): Nematode response to metal, PAHs and organic enrichment in tourist marinas of the mediterranean sea. Mar Pollut Bull, 58: 1192–1201. DOI:10.1016/j.marpolbul.2009.03.016Moreno M. Albertelli A. Fabiano M. 2009 Nematode response to metal, PAHs and organic enrichment in tourist marinas of the mediterranean sea Mar Pollut Bull 58 1192 1201 10.1016/j.marpolbul.2009.03.01619386320Open DOISearch in Google Scholar

Näslund, J., Nascimento, F.J.A., Gunnarsson, J.S. (2010): Meiofauna reduces bacterial mineralization of naphthalene in marine sediment. Isme J, 4(11): 1421–1430. DOI: 10.1038/ismej.2010.63Näslund J. Nascimento F.J.A. Gunnarsson J.S. 2010 Meiofauna reduces bacterial mineralization of naphthalene in marine sediment Isme J 4 11 1421 1430 10.1038/ismej.2010.6320463764Open DOISearch in Google Scholar

Navarro, S., Vela, N., Navarro, G. (2007): An overview on the environmental behaviour of pesticide residues in soils. Span. J Agric Res, 5(3): 357–375. DOI: 10.5424/sjar/2007053-5344Navarro S. Vela N. Navarro G. 2007 An overview on the environmental behaviour of pesticide residues in soils Span. J Agric Res 5 3 357 375 10.5424/sjar/2007053-5344Open DOISearch in Google Scholar

Net, S., El-Osmani, R., Prygiel, E., Rabodonirina, S., Dumoulin, D., Ouddane, B. (2015): Overview of persistent organic pollution (PAHs, Me-PAHs and PCBs) in freshwater sediments from Northern France. J Geochem Explor, 48: 181–188. DOI: 10.1016/j.gexplo.2014.09.008Net S. El-Osmani R. Prygiel E. Rabodonirina S. Dumoulin D. Ouddane B. 2015 Overview of persistent organic pollution (PAHs, Me-PAHs and PCBs) in freshwater sediments from Northern France J Geochem Explor 48 181 188 10.1016/j.gexplo.2014.09.008Open DOISearch in Google Scholar

Okere, U.V., Semple, K.T. (2011): Biodegradation of PAHs in ‘pristine’ soils from different climatic regions. J Bioremed Biodegr, 1: 1–11. DOI: 10.4172/2155-6199.S1-006Okere U.V. Semple K.T. 2011 Biodegradation of PAHs in ‘pristine’ soils from different climatic regions J Bioremed Biodegr 1 1 11 10.4172/2155-6199.S1-006Open DOISearch in Google Scholar

Penning, T.M. (2014): Human aldo-keto reductases and the metabolic activation of polycyclic aromatic hydrocarbons. Chem Res Toxicol, 27(11): 1901–1917. DOI: 10.1021/tx500298nPenning T.M. 2014 Human aldo-keto reductases and the metabolic activation of polycyclic aromatic hydrocarbons Chem Res Toxicol 27 11 1901 1917 10.1021/tx500298n423749425279998Open DOISearch in Google Scholar

Pilloni, G., Granitsiotis, M.S., Engel, M., Lueders, T. (2012): Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes. PLoS One, 7 (7): e40467. DOI: 10.1371/journal.pone.0040467Pilloni G. Granitsiotis M.S. Engel M. Lueders T. 2012 Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes PLoS One 7 7 e40467 10.1371/journal.pone.0040467339570322808168Open DOISearch in Google Scholar

Postma, J.F., Davids, C. (1995): Tolerance induction and life cycle changes in cadmium-exposed Chironomus riparius (Diptera) during consecutive generations. Ecotoxicol Environ Saf, 30(2): 195–202. DOI: 10.1006/eesa.1995.1024Postma J.F. Davids C. 1995 Tolerance induction and life cycle changes in cadmium-exposed Chironomus riparius (Diptera) during consecutive generations Ecotoxicol Environ Saf 30 2 195 202 10.1006/eesa.1995.10247539374Open DOISearch in Google Scholar

Reid, B.J., Jones, K.C., Semple, K.T. (2000): Bioavailability of persistent organic pollutants in soils and sediments—a perspective on mechanisms, consequences and assessment. Environ Pollut, 108(1): 103–112. DOI: 10.1016/S0269-7491(99)00206-7Reid B.J. Jones K.C. Semple K.T. 2000 Bioavailability of persistent organic pollutants in soils and sediments—a perspective on mechanisms, consequences and assessment Environ Pollut 108 1 103 112 10.1016/S0269-7491(99)00206-7Open DOISearch in Google Scholar

Sack, U., Heinze, T.M., Deck, J., Cerniglia, C.E., Martens, R., Zadrazil, F., Fritsche, W. (1997): Comparison of phenanthrene and pyrene degradation by different wood-decaying fungi. Appl Environ Microbiol, 63(10): 3919–3925Sack U. Heinze T.M. Deck J. Cerniglia C.E. Martens R. Zadrazil F. Fritsche W. 1997 Comparison of phenanthrene and pyrene degradation by different wood-decaying fungi Appl Environ Microbiol 63 10 3919 392510.1128/aem.63.10.3919-3925.19971687039327556Search in Google Scholar

Saint-Denis, M., Narbonne, J.F., Arnaud, C., Thybaud, E., Ribera, D. (1999): Biochemical responses of the earthworm Eisenia fetida andrei exposed to contaminated artificial soil: effects of benzo (a) pyrene. Soil Biol Biochem, 31(13): 1837–1846. DOI: 10.1016/S0038-0717(99)00106-6Saint-Denis M. Narbonne J.F. Arnaud C. Thybaud E. Ribera D. 1999 Biochemical responses of the earthworm Eisenia fetida andrei exposed to contaminated artificial soil: effects of benzo (a) pyrene Soil Biol Biochem 31 13 1837 1846 10.1016/S0038-0717(99)00106-6Open DOISearch in Google Scholar

Snow-Ashbrook, J., Erstfeld, K.M. (1998): Soil nematode communities as indicators of the effects of environmental contamination with polycyclic aromatic hydrocarbons. Ecotoxicology, 7(6): 363–370. DOI: 10.1023/A:1008826230215Snow-Ashbrook J. Erstfeld K.M. 1998 Soil nematode communities as indicators of the effects of environmental contamination with polycyclic aromatic hydrocarbons Ecotoxicology 7 6 363 370 10.1023/A:1008826230215Open DOISearch in Google Scholar

Soto, L.A., Salcedo, D.L., Arvizu, K., Botello, A.V. (2017): Inter-annual patterns of the large free-living nematode assemblages in the mexican exclusive economic zone, NW Gulf of Mexico after the Deepwater Horizon oil spill. Ecol Indic, 79: 371–381. DOI: 10.1016/j.ecolind.2017.03.058Soto L.A. Salcedo D.L. Arvizu K. Botello A.V. 2017 Inter-annual patterns of the large free-living nematode assemblages in the mexican exclusive economic zone, NW Gulf of Mexico after the Deepwater Horizon oil spill Ecol Indic 79 371 381 10.1016/j.ecolind.2017.03.058Open DOISearch in Google Scholar

Stone, D., Costa , D., Daniell, T.J., Mitchell, S.M., Topp, C.F.E., Griffiths, B.S. (2016): Using nematode communities to test a European scale soil biological monitoring programme for policy development. Appl Soil Ecol, 97: 78-85. DOI: 10.1016/j.ap-soil.2015.08.017Stone D. Costa D. Daniell T.J. Mitchell S.M. Topp C.F.E. Griffiths B.S. 2016 Using nematode communities to test a European scale soil biological monitoring programme for policy development Appl Soil Ecol 97 78 85 10.1016/j.ap-soil.2015.08.017Open DOISearch in Google Scholar

Sun, M., Liu, K., Zhao, Y., Tian, D., Ye, M., Liu, M., Jiao, J., Jiang, X. (2017): Effects of bacterial-feeding nematode grazing and tea saponin addition on the enhanced bioremediation of pyrene-contaminated soil using polycyclic aromatic hydrocarbon-degrading bacterial strain. Pedosphere, 27(6): 1062–1072. DOI: 10.1016/S1002-0160(17)60451-XSun M. Liu K. Zhao Y. Tian D. Ye M. Liu M. Jiao J. Jiang X. 2017 Effects of bacterial-feeding nematode grazing and tea saponin addition on the enhanced bioremediation of pyrene-contaminated soil using polycyclic aromatic hydrocarbon-degrading bacterial strain Pedosphere 27 6 1062 1072 10.1016/S1002-0160(17)60451-XOpen DOISearch in Google Scholar

Swain, S., Wren, J.F., Stürzenbaum, S.R., Kille, P., Morgan, A.J., Jager, T., Jonker, M.J., Hankard, P.K., Svendsen, C., Owen, J., Hedley, B.A., Blaxter, M., Spurgeon, D.J. (2010): Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans BMC Syst Biol, 4(32): 1–19. DOI: 10.1186/1752-0509-4-32Swain S. Wren J.F. Stürzenbaum S.R. Kille P. Morgan A.J. Jager T. Jonker M.J. Hankard P.K. Svendsen C. Owen J. Hedley B.A. Blaxter M. Spurgeon D.J. 2010 Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans BMC Syst Biol 4 32 1 19 10.1186/1752-0509-4-32285782320331876Open DOISearch in Google Scholar

Šalamún, P., Hanzelová, V., Miklisová, D., Šestinová, O., Findoráková, L., Kováčik, P. (2017): The effects of vegetation cover on soil nematode communities in various biotopes disturbed by industrial emissions. Sci Total Environ, 592: 106–114. DOI: 10.1016/j.scitotenv.2017.02.238Šalamún P. Hanzelová V. Miklisová D. Šestinová O. Findoráková L. Kováčik P. 2017 The effects of vegetation cover on soil nematode communities in various biotopes disturbed by industrial emissions Sci Total Environ 592 106 114 10.1016/j.scitotenv.2017.02.23828314130Open DOISearch in Google Scholar

Šalamún, P., Kucanová, E., Brázová, T., Miklisová, D., Renčo, M., Hanzelová, V. (2014): Diversity and food web structure of nematode communities under high soil salinity and alkaline pH. Ecotoxicology, 23(8): 1367–1376. DOI: 10.1007/s10646-014-1278-7 Šalamún, P., Renčo, M., Kucanová, E., Brázová, T., Papajová, I., Miklisová, D., Hanzelová, V. (2012): Nematodes as bioindicators of soil degradation due to heavy metals. Ecotoxicology, 21: 2319–2330. DOI 10.1007/s10646-012-0988-yŠalamún P. Kucanová E. Brázová T. Miklisová D. Renčo M. Hanzelová V. 2014 Diversity and food web structure of nematode communities under high soil salinity and alkaline pH Ecotoxicology 23 8 1367 1376 10.1007/s10646-014-1278-7 Šalamún, P., Renčo, M., Kucanová, E., Brázová, T., Papajová, I., Miklisová, D., Hanzelová, V. (2012): Nematodes as bioindicators of soil degradation due to heavy metals. Ecotoxicology, 21 2319-2330 10.1007/s10646-012-0988-y24996531Open DOISearch in Google Scholar

Taylor, J.W., Turner, E., Townsend, J.P., Dettman, J.R., Jacobson, D. (2006): Eukaryotic microbes, species recognition and geographic limits of species: examples from the kingdom Fungi. Phil Trans R Soc, B 361: 1947–1963. DOI: 10.1098/rstb.2006.1923Taylor J.W. Turner E. Townsend J.P. Dettman J.R. Jacobson D. 2006 Eukaryotic microbes, species recognition and geographic limits of species: examples from the kingdom Fungi Phil Trans R Soc, B 361 1947 1963 10.1098/rstb.2006.1923176493417062413Open DOISearch in Google Scholar

Van Den Hoogen, J., Geisen, S., Wall, D.H., Wardle, D.A., Traunspurger, W., De Goede R.G.M., Adams, B.J., Ahmad, W., Ferris, H.L., Bardgett, R.D., et al. (2020). A global database of soil nematode abundance and functional group composition. Sci Data, 7: 103. DOI: 10.1038/s41597-020-0437-3Van Den Hoogen J. Geisen S. Wall D.H. Wardle D.A. Traunspurger W. De Goede R.G.M. Adams B.J. Ahmad W. Ferris H.L. Bardgett R.D. et al 2020 A global database of soil nematode abundance and functional group composition Sci Data 7 103 10.1038/s41597-020-0437-3709902332218461Open DOISearch in Google Scholar

Walker, B., Holling, C.S., Carpenter, S.R., Kinzig, A.P. (2004): Resilience, adaptability and transformability in social–ecological systems. Ecol Soc, 9(2): 5. DOI: 10.5751/ES-00650-090205Walker B. Holling C.S. Carpenter S.R. Kinzig A.P. 2004 Resilience, adaptability and transformability in social–ecological systems Ecol Soc 9 2 5 10.5751/ES-00650-090205Open DOISearch in Google Scholar

Wang, Z., Chen, J., Yang, P., Qiao, X., Tian, F. (2007): Polycyclic aromatic hydrocarbons in Dalian soils: distribution and toxicity assessment. J. Environ Monitor, 9(2): 199–204. DOI: 10.1039/b617338cWang Z. Chen J. Yang P. Qiao X. Tian F. 2007 Polycyclic aromatic hydrocarbons in Dalian soils: distribution and toxicity assessment J. Environ Monitor 9 2 199 204 10.1039/b617338cOpen DOISearch in Google Scholar

Wilcke, W., Amelung, W., Martius, C., Garcia, M.V.B., Zech, W. (2000): Biological sources of polycyclic aromatic hydrocarbons (PAHs) in the Amazonian rain forest. J Plant Nutr Soil Sci, 163(1): 27–30. DOI: 10.1002/(SICI)1522-2624(200002)163:1<27::AID-JPLN27>3.0.CO;2-EWilcke W. Amelung W. Martius C. Garcia M.V.B. Zech W. 2000 Biological sources of polycyclic aromatic hydrocarbons (PAHs) in the Amazonian rain forest J Plant Nutr Soil Sci 163 1 27 30 10.1002/(SICI)1522-2624(200002)163:1<27::AID-JPLN27>3.0.CO;2-EOpen DOISearch in Google Scholar

Wu, H., Huang, C., Taki, F.A., Zhang, Y., Dobbins, D.L., Li, L., Yan, H., Pan X. (2015): Benzo-α-pyrene induced oxidative stress in Caenorhabditis elegans and the potential involvements of microRNA. Chemosphere, 139: 496–503. DOI: 10.1016/j.chemosphere.2015.08.031Wu H. Huang C. Taki F.A. Zhang Y. Dobbins D.L. Li L. Yan H. Pan X. 2015 Benzo-α-pyrene induced oxidative stress in Caenorhabditis elegans and the potential involvements of microRNA Chemosphere 139 496 503 10.1016/j.chemosphere.2015.08.031Open DOISearch in Google Scholar

Yeates, G.W., Bongers, T., De Goede, R.G.M., Freckman, W., Georgieva, S.S. (1993): Feeding habits in soil nematode families and genera – an outline for soil ecologists. J Nematol, 25(3): 315–331 Yu, K.S.H., Wong, A.H.Y., Yau, K.W.Y., Wong Y.S., Tam, N.F.Y. (2005): Natural attenuation, biostimulation and bioaugmentation on biodegradation of polycyclic aromatic hydrocarbons (PAHs) in mangrove sediments. Mar Pollut Bull, 51(8-12): 1071–1077. DOI: 10.1016/j.marpolbul.2005.06.006Yeates G.W. Bongers T. De Goede R.G.M. Freckman W. Georgieva S.S. 1993 Feeding habits in soil nematode families and genera – an outline for soil ecologists J Nematol 25 3 315 331 Yu, K.S.H., Wong, A.H.Y., Yau, K.W.Y., Wong Y.S., Tam, N.F.Y. (2005): Natural attenuation, biostimulation and bioaugmentation on biodegradation of polycyclic aromatic hydrocarbons (PAHs) in mangrove sediments. Mar Pollut Bull, 51 (8-12) 1071-1077 10.1016/j.marpolbul.2005.06.006Open DOISearch in Google Scholar

Yu, C., Liao, V.H.C. (2016): Transgenerational reproductive effects of arsenite are associated with H3K4 dimethylation and SPR-5 downregulation in Caenorhabditis elegans Environ Sci Technol, 2016, 50(19): 10673–10681. DOI: 10.1021/acs.est.6b02173Yu C. Liao V.H.C. 2016 Transgenerational reproductive effects of arsenite are associated with H3K4 dimethylation and SPR-5 downregulation in Caenorhabditis elegans Environ Sci Technol, 2016 50 19 10673 10681 10.1021/acs.est.6b02173Open DOISearch in Google Scholar

Zhang, Y., Wang, F., Bian, Y., Kengara, F.O., Gu, C., Zhao, Q., Jiang, X. (2012): Enhanced desorption of humin-bound phenanthrene by attached phenanthrene-degrading bacteria. Bioresour Technol, 123: 92–97. DOI: 10.1016/j.biortech.2012.07.093Zhang Y. Wang F. Bian Y. Kengara F.O. Gu C. Zhao Q. Jiang X. 2012 Enhanced desorption of humin-bound phenanthrene by attached phenanthrene-degrading bacteria Bioresour Technol 123 92 97 10.1016/j.biortech.2012.07.093Open DOISearch in Google Scholar

Zhou, J., Sun, X., Jiao, J., Liu, M., Hu, F., Li, H. (2013): Dynamic changes of bacterial community under the influence of bacterial-feeding nematodes grazing in prometryne contaminated soil. Appl Soil Ecol, 64: 70–76. DOI: 10.1016/j.apsoil.2012.1Zhou J. Sun X. Jiao J. Liu M. Hu F. Li H. 2013 Dynamic changes of bacterial community under the influence of bacterial-feeding nematodes grazing in prometryne contaminated soil Appl Soil Ecol 64 70 76 10.1016/j.apsoil.2012.1Open DOISearch in Google Scholar